Ctho026773.2
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010000027.1:767287-776244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.017 1.3 10.0 0.6 3 23 700 721 699 721 0.90 2 23 0.035 2.5 9.1 0.3 1 21 1087 1107 1087 1108 0.96 3 23 6.5 4.7e+02 1.9 0.3 1 22 1150 1171 1150 1173 0.82 4 23 0.055 3.9 8.4 0.8 3 21 1184 1202 1182 1203 0.94 5 23 0.42 30 5.6 0.0 3 23 1212 1233 1210 1233 0.89 6 23 0.04 2.9 8.9 0.1 3 23 1253 1274 1251 1274 0.96 7 23 0.034 2.4 9.1 1.5 1 23 1280 1303 1280 1303 0.92 8 23 0.086 6.2 7.8 0.0 1 23 1327 1350 1327 1350 0.90 9 23 0.056 4 8.4 2.4 1 23 1355 1377 1355 1377 0.95 10 23 0.04 2.9 8.9 0.0 1 23 1383 1406 1383 1406 0.96 11 23 0.0071 0.51 11.2 0.6 1 23 1420 1442 1420 1442 0.97 12 23 0.00017 0.012 16.3 1.8 1 23 1487 1510 1487 1510 0.97 13 23 0.00023 0.016 15.9 1.1 1 23 1578 1601 1578 1601 0.95 14 23 0.0043 0.31 11.9 1.4 2 23 1626 1648 1625 1648 0.95 15 23 0.45 33 5.5 0.2 2 23 1654 1676 1653 1676 0.93 16 23 0.036 2.6 9.0 0.2 1 21 1713 1733 1713 1734 0.94 17 23 0.0011 0.077 13.8 0.1 1 23 1744 1766 1744 1766 0.94 18 23 8.6e-05 0.0061 17.3 0.3 2 23 1854 1876 1854 1876 0.93 19 23 4e-07 2.9e-05 24.6 1.1 3 23 1883 1903 1882 1903 0.98 20 23 0.0051 0.37 11.7 0.0 3 23 1923 1943 1921 1943 0.96 21 23 0.27 19 6.3 0.0 1 23 1964 1986 1964 1986 0.97 22 23 0.01 0.75 10.7 0.5 1 23 1992 2015 1992 2015 0.95 23 23 0.00018 0.013 16.2 0.8 1 23 2023 2046 2023 2046 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGGATTATGATAGTGTTTGTAGACTGTGCTTAGCATCCGAGCGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCCCTCGTCCTCGCTTTGAAAATCAAAGATTGCGTGTCCATACAGATCGAGGAGAATGACGATCTACCAAGTAATATATGCAAGAAATGCAGTGATAATGTTAATAACTGGGAGATATTCAAGGGAGTTTGTGAAAGAACACAAAATAAGCTTCTACAATTGACCAACAAAAAGGACAGCAGCCAACTGGAAGAGTTAAATGTGAAAAGAGAGCCGTACACAGATGAAGCCTATGAGGAAGGAGTGATCATAGATGGCTCATACCAGGAAAGTGAGAGCAACGAGGGAACAAACAAATTACAACCTGAGGGGCCACCAATACTTACTTCTTTGGGATTGACGCCGAGGAGTGATAAGAAATATGTAGATCCCAGAATGGACTGGCAACGAGTCCATGCAATATTGGACATTGTTCAAGAGGACGAGGTCATTGACTCGTTACAAATGAGAGAGGAGTGCGATGTTGTCCATCAATCGGAACACGACTCTGACACAGATATTGAACTCAATGAGGACATAAAGCAGGAGTATCTGGAATTCAAGAAAGGATATGTTTGTAAAAATAAGAAGATACTGTCTAAGAACCCAAAACTTTTATCTTCTCATAACATTGCTCGAGCTCGGAAGGTTGTCAGCTTGAGAAAGAAACAAACTGTATTGCCGCACAAGTATTACTCTATGCCACGCCACACTTGGCAGCTGTTCATTTCCGATGATCTTTTGGAGCTAATTGTGGCTGCAACTAATGTGAAAATGGAAATGAATGAGCCGAGATACTTTCCAACAAAGATTAGTGAAATAAAAACACTTATAGGTATCCTGTACTACCACGGGATAACAAGAGCAACACACCAAAAGTGTAGTGAGCTCTGGAGCCATGAGTTTGGAGCGCCATGTGTTCAAGCATCCATGAAGTACGACCGATTTAAGACTTTGCTTCAGAACCTGAGCTTTGAAAATAAAGAAAATGAAACAATCATGGAGCTGGATGTCATGAAGCAAATACGTCAAGTGTTTGAAATATTCGCATTAAACTGTCGAACTTCTTTTGCGGTTGGTAATACTGTTGTAATTGATGAAGTTATGCTGCCAGTGTATGGTCCTTGCCCTTTCCGATATCAGATTAAAAAGAAAGAACTCAGCTCCGGAATAAAAATGGTACTCATAGTGGATCCGAGTAACTTTTATATATCTAATTTGGATGTGATAACGGATCCATATTTTGAAAGTGATGACATTGCAATGAAGCTCTTGCAGCATTTGGCTGGTACTTACAAAACTGTCGTCATGGACAGTTGGTTTTCATCTTCAAGATTAGTTAATAAATTACTTAATGAATACAAACTTTTCTCTTTGGCTGCTGTAAATGAGAAAAATGAAATCTTGCCACCATTATTTGTGTCTCATCACAGGAAAAATAGAGTTTTACTTAACGGTTTTGTAGATGAACATGTACTTCTAATGTCACTTATCGATTCCAACCTCAAGACTGTCAATGTACTGACTAATGAACCTAAACACTACAAAAAGAGCAATGTGAACTCCATAACACCAATTTCACTATACAAGAAACATCAGTCGGCCGTCCAAGTTATAGATGTTCTAATGCATTACTATACAACTATGCAGCATACTAATGATTGGATGCTGTCCATATTTTTCATGTTGCTTAACATTGCATCGGTAAATGCTCAAGTCATGTGGACTTCCCAGTCACCGAATACGAGCATGAAACGTCGCTTCTTCATCAGAGAGTTAGCACTGAGTCTTATGGATTCACAGTATGAACCTCTGATCTCAGAGTTTAATGGTGTGGACAGCGATAAAGAGGATTACGAGGACGACCAGGACGAGCCCGCTGACGATGACGAGGAGGAAGTGAAGGAGCAGAAACCATACTCCAACATACCCAACATGCCCGAAGTGTCCATAACCGTGATGCGACCTACCGGGGAGACTCTGCACGCAAGGCAGGGGATCCAGCAGCTCGCCTCTAAGGACTGTCTCGTCTGCGGCCGCAGCTACAGGTACTCTCATAACGCGCGCCGACACGAGCTGGGAGCTCACAACTTTGACCGATACACCAACAACCACGCCGCCAAGAAGATAATGCAACCCAAGTTCAGACCCAACCCCTTCAACCCTAAAGCCAGACTCATGCCCAACCCTATCAGCCACAAAATGCAGTACATGAACATGAACATGGGCATGACCAAGCCCCTGCAGAAGAAGATAGTGCCTCAAAAACTGGTCGCCTGCCCGAAACCGATACCGATAAAGAACGCCAAACCGAACCAAACCAATCTGCCGTACCCGCTGCGTATAAAAGCTCTGAAGGACCTTCAAATCAAAAAGAAGGAGCCCCAGATCCTGAAGACTCTTTTGACTTCGAAACCTGAAGTTTTGGTCTCCGAACCGGAAATAATGAATTCCGGCCCCGAGAGTCCGGAGACATTGATATCCGAGCCGGAGATAGCGTCTTTCGCGGTCGAGACCATCCTGTCCGAGCCGGACGGGTACGCCCCTCACGACGACTACGAAGCCGAGGAACAGAATAAGCGAGGGCATAACTACGATACGGTGGACATGGACTCTGAGAACGAAATAGAAATAGCGCGCCAGCAGGCCGACGTCGATTACGACGAGGATCACGAGCAGAAGGAGGGCGACACCAAGGAGGACTTCAATGACAACGACGACTCCGACAAAAACAGCGCCGGCGATAACGTGGGTGATATCAGTGAGGCTAAACAGGAGGAGGAAGGCGACGACGGCGGAGACAAAGTGAACGAGGACCTGACGGAGAACAAGGACGACCAAGACGCCCCCGACGACGAGGACGAAGACGAGGACATGCCTCCCATCGCGCCCGTCGTCGAGATTAATGAGGAAATGAACGACTCCTTCAATAATGACGACAACGACGACGACTATCTCGATGATACCGTCGACCCCAACGACGCCGCTGACCTTGACACTACCCCTAAGATACTCGATCCCGACAAAATCTACGTGACGAAGACTCAAAAGGAGTTCATAGACAAATATCGCGACATCATTCAGCAGATAAACACCATGACCTGCCTCTGCTGCAACAAGGAGCACCCCCGACGGAAGGCGGTCATCCAGCACCTCCAGAAGAATGGCCACAAGGTCCCCAAGCACACCTGCTACAACTGCGTCATCACGTTCAGTCACATAGGCGCCCTGCTGAGCCACATGCGTGCCAACTGTTGCACCGATCTGTGGAAAATTATATTCAACGAGAACGGCATCACTGACGACATGGTGATCGAGGACGAGCCGAAGGACAACAAGGTCGCGTATAAGGACATCTTCAACGCGAGATCGTACGCCTGCAAACTCTGCCCGGCGAAGTTCCAGCTGAAACAGTTCATAATGAAGCACGTCTTGGACGTCCACGAGGATGGTCAGTCGCGGGTGCAGCTGGCGTGCGTCCACTGCCGGTCGAGGTTCAAGGACAAGGCGCTGTGGAAGAAGCACATCCGAAACGGCGAGTGCACTGTGTACATCGCGTGCGACCTGTGCACCGAGACCTTTATAACCATGCAGGAGTTCAACGACCACGCGCTCGCCGTGCACGCCGGGCACTTCGACCCCGACAGCCAGAACAAGTGCGTCGACGGCCGCCCCACCGACTGCCCGATTTGCGGCAAGAAGAACAGCGGCTACCCCAATCTCGTAAAGCACTTGAAGATCATCCACGACGAGGAGCGGCCGCACTACTGCCGGCACTGCGACTCCAAGTTCAAGGAGGCGGGCGACCTCAACGAGCACATTTACGCGGCTCACTCCGACCGCTCGATGCGCGGCGCCGAGCCCGACCTGGCCGCGGTCAAGGAGGAGGCCGAGGAGTACCACTACTCGTGCACCGAGTGTGACGCCATATTTGAGACTGTCGATGCCTGGACCGACCACCAGGTCGCCGAGCACGACCAGATTGCGCACCACTGCGACCAGTGCGAGAAAAAGTTCCTCCGCCCCTCCGAGCTCGCCGAGCACAAGAACGCGCACCTCCGCGTCAAGTTCTACCCGTGCTCTATCTGCGCCAACTCGTACAGCACGGCGGCTAAGCTGGCCGAGCACGCGCAGCGGGCGCACCCTGGCGCCGGCACCGCGGCTACTCCCGGCGAGAACCTCTTCAACTGCGACGCCTGCGTGCGCGGCTTCAAGAGCCGCCAGGCCTACTCGAACCATATGCGCATCCACTCGAAGCTCCCCCAGGCTGGCGGCCGCGCGGATCGCCGCAGCTTTGCCCCGCAGATCGTCGGGAAGCCGATCCTGCATTACCCTCTGATGCAGCAGGGCTTCCGGTCGAACCTGTCCGTCCCCAACGCGCCCTACTCCTGCGACATCTGCGGCAAGGGCTTCATGCATAAGAAGAACATCTGGAAGCACAAGAAGGTGCTGCACGCCGACGTCGTCGCCGACCGCGTCGACAGCGAGGAGAACACTATGCACGCGTCCACGGAAGAGGACGAGCACAACGGGGACGAGAACGGCGGGCTCTCGACGCCGCAGTTCGACAGCTTCGACTTTGGTGGCCGCCCCGCCGTTGCCCCGCCCCGCCCCGCCGCGCCCCGCGCCGCCCCGCCGCCGCCGGACGCCGCGCAGTACGCGTGCGACCTGTGCTCCAAGCGATTCCCCCAGCGTACGAGCCTGTGGAAGCACAAGCGCGCGAAGCACGGTATCATCAACGCCGCCGCCATCGGCACGGCCGACGTCCAGCCGGCCGGCAGCGAGGGCGGCGGCCGCTCCAGCTGCACCATCTGCCGGATCACCTTCGCCGACAAGAAGTCCTACTACAGGCACAGGAAGAACGTGCACAAGTCCACCGTTCAGATGTGTAAGCTGTGCGGGCAGACACTCAACTCAACACTCGAACTGTACGAGCACCTCAAGGCGGCGCACTCTCGCGAGCTGCTGGGCCCCACCGCCCCACAGCCCGCCGGCGAGTACGAGCCGGACGATCGGGAGGCCGAGCCCGTGCGCGCTGATCCTGCCGACTACCAGGCGCACTACACCTGCGACGCCTGCGGTAAGCGCTTTGTCGGCCTCCTCGCCCTGCAGAATCACCGGTGCGTCTCCGCCGTGCCGCAGCAGTCGCAAACTTTCGAGTGCGAGATCTGCAACAAGAGCTACGTCTCCATCGCGGCGCTCAAAAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCCGCGACTAACTCCGGCCTGTGGATGCCGCACGCGAAGGTCACCAGCAAGGTCAGCAAGTTCGAGGTGGTGGACCCGGGAGCGCGGGCGGGGGGCACGCCGCCCGGCCCCGCCGCGCTTGCCAAGCGCCGCCTGCCGCCCGAGGTCGAGGTGACTGTCGTTAACCCCAACAAGCGCATGCGCCCCGACGACGCCGGTGAACCGGAGCGGGCACCCGCGCCCGCCGGCGACGACCGCTACTGCAACATCTGCGACAAGGAATTCACCAAGCGGGCCGCGTACCAGCGGCACATGGACGAGGTGCACCGGCCAAACTCCGTCTTCTGCCCCGTGTGCGACCGCAGCTTCACGCGCAAGTCGACGCTCATCGTACACATGAAGAAGCACTACGAGGCGGAGGAGGGTGGTTCGGCGGGCGGCGGCGGGGGGGAGGAGGCGCTCGCGTGCGACGTGTGCGGCGTGCAGTTCAACGACGAGGCAGAGCTGGCCGCGCATCGCGAGATGCACGACGAGGAGTCCGCCGAGTCCGGTGGGGAGGAGGGGGGCCATGCGCCGCCGCCGGGGGAGTTCACGTGCGCGCAGTGCGGGGACGGCGTGGCCAGCCCGCGGGACCTGATCGCGCACCGCGCCATGCACGCGACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGCGAGCTATCGACCTGTCCACGCATACGCGCGCACGGCACGCCGACGACGATAAGGTGTTCTTCCCGTGCGCCATGTGCGATCGCTTCTACATGAACAAGAAGAGCCTTCAGCGGCACATCGAGACGTCCCACTGA
- Protein Sequence
- MSVDYDSVCRLCLASERELLPIFPTTSSDDSEPLVLALKIKDCVSIQIEENDDLPSNICKKCSDNVNNWEIFKGVCERTQNKLLQLTNKKDSSQLEELNVKREPYTDEAYEEGVIIDGSYQESESNEGTNKLQPEGPPILTSLGLTPRSDKKYVDPRMDWQRVHAILDIVQEDEVIDSLQMREECDVVHQSEHDSDTDIELNEDIKQEYLEFKKGYVCKNKKILSKNPKLLSSHNIARARKVVSLRKKQTVLPHKYYSMPRHTWQLFISDDLLELIVAATNVKMEMNEPRYFPTKISEIKTLIGILYYHGITRATHQKCSELWSHEFGAPCVQASMKYDRFKTLLQNLSFENKENETIMELDVMKQIRQVFEIFALNCRTSFAVGNTVVIDEVMLPVYGPCPFRYQIKKKELSSGIKMVLIVDPSNFYISNLDVITDPYFESDDIAMKLLQHLAGTYKTVVMDSWFSSSRLVNKLLNEYKLFSLAAVNEKNEILPPLFVSHHRKNRVLLNGFVDEHVLLMSLIDSNLKTVNVLTNEPKHYKKSNVNSITPISLYKKHQSAVQVIDVLMHYYTTMQHTNDWMLSIFFMLLNIASVNAQVMWTSQSPNTSMKRRFFIRELALSLMDSQYEPLISEFNGVDSDKEDYEDDQDEPADDDEEEVKEQKPYSNIPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNHAAKKIMQPKFRPNPFNPKARLMPNPISHKMQYMNMNMGMTKPLQKKIVPQKLVACPKPIPIKNAKPNQTNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFAVETILSEPDGYAPHDDYEAEEQNKRGHNYDTVDMDSENEIEIARQQADVDYDEDHEQKEGDTKEDFNDNDDSDKNSAGDNVGDISEAKQEEEGDDGGDKVNEDLTENKDDQDAPDDEDEDEDMPPIAPVVEINEEMNDSFNNDDNDDDYLDDTVDPNDAADLDTTPKILDPDKIYVTKTQKEFIDKYRDIIQQINTMTCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFSHIGALLSHMRANCCTDLWKIIFNENGITDDMVIEDEPKDNKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCRSRFKDKALWKKHIRNGECTVYIACDLCTETFITMQEFNDHALAVHAGHFDPDSQNKCVDGRPTDCPICGKKNSGYPNLVKHLKIIHDEERPHYCRHCDSKFKEAGDLNEHIYAAHSDRSMRGAEPDLAAVKEEAEEYHYSCTECDAIFETVDAWTDHQVAEHDQIAHHCDQCEKKFLRPSELAEHKNAHLRVKFYPCSICANSYSTAAKLAEHAQRAHPGAGTAATPGENLFNCDACVRGFKSRQAYSNHMRIHSKLPQAGGRADRRSFAPQIVGKPILHYPLMQQGFRSNLSVPNAPYSCDICGKGFMHKKNIWKHKKVLHADVVADRVDSEENTMHASTEEDEHNGDENGGLSTPQFDSFDFGGRPAVAPPRPAAPRAAPPPPDAAQYACDLCSKRFPQRTSLWKHKRAKHGIINAAAIGTADVQPAGSEGGGRSSCTICRITFADKKSYYRHRKNVHKSTVQMCKLCGQTLNSTLELYEHLKAAHSRELLGPTAPQPAGEYEPDDREAEPVRADPADYQAHYTCDACGKRFVGLLALQNHRCVSAVPQQSQTFECEICNKSYVSIAALKSHRGWHLRSPDGKAAATNSGLWMPHAKVTSKVSKFEVVDPGARAGGTPPGPAALAKRRLPPEVEVTVVNPNKRMRPDDAGEPERAPAPAGDDRYCNICDKEFTKRAAYQRHMDEVHRPNSVFCPVCDRSFTRKSTLIVHMKKHYEAEEGGSAGGGGGEEALACDVCGVQFNDEAELAAHREMHDEESAESGGEEGGHAPPPGEFTCAQCGDGVASPRDLIAHRAMHATPTKFFCNICKVYFARAIDLSTHTRARHADDDKVFFPCAMCDRFYMNKKSLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178861; iTF_00744961; iTF_01248399; iTF_00935017; iTF_00404031;
- 90% Identity
- -
- 80% Identity
- -