Lcor017165.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lysandra coridon
Gene Symbol
-
Assembly
GCA_905220515.1
Location
HG992081.1:4228798-4238771[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.019 1.6 10.0 0.6 3 23 744 765 743 765 0.90
2 22 0.51 43 5.5 0.2 1 21 1130 1150 1130 1151 0.96
3 22 7 5.9e+02 1.9 0.3 1 22 1193 1214 1193 1216 0.82
4 22 0.059 5 8.4 0.8 3 21 1227 1245 1225 1246 0.94
5 22 0.3 26 6.2 0.0 3 23 1255 1276 1253 1276 0.89
6 22 0.12 11 7.4 0.1 3 23 1296 1317 1294 1317 0.96
7 22 0.0059 0.5 11.6 1.7 1 23 1323 1346 1323 1346 0.95
8 22 0.092 7.8 7.8 0.0 1 23 1369 1392 1369 1392 0.90
9 22 0.02 1.7 9.9 3.4 1 23 1397 1419 1397 1419 0.97
10 22 0.0044 0.37 12.0 0.0 1 23 1425 1448 1425 1448 0.96
11 22 0.0016 0.13 13.4 1.8 1 23 1462 1484 1462 1484 0.98
12 22 0.00019 0.016 16.3 1.8 1 23 1529 1552 1529 1552 0.97
13 22 0.00034 0.029 15.5 1.2 1 23 1620 1643 1620 1643 0.95
14 22 0.0046 0.39 11.9 1.4 2 23 1668 1690 1667 1690 0.95
15 22 0.48 41 5.5 0.1 2 23 1696 1718 1695 1718 0.93
16 22 0.0051 0.43 11.8 0.5 1 21 1754 1774 1754 1775 0.94
17 22 0.0055 0.46 11.7 0.1 1 23 1785 1807 1785 1807 0.93
18 22 9.2e-05 0.0078 17.2 0.3 2 23 1898 1920 1898 1920 0.93
19 22 1.9e-07 1.6e-05 25.7 1.0 3 23 1927 1947 1926 1947 0.98
20 22 0.28 24 6.3 0.0 1 23 1988 2010 1988 2010 0.97
21 22 0.026 2.2 9.5 0.6 1 23 2016 2039 2016 2039 0.95
22 22 0.00019 0.016 16.2 0.8 1 23 2047 2070 2047 2070 0.97

Sequence Information

Coding Sequence
ATGAGTGTGGATTATGATAGTGTTTGTAGACTTTGCTTAGCATCCGAACGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCCCTCGTCCTCGCATCGAAAATCAAAGATTGCGTGTCCATACAGATCGAGGAGAATGACGATCTACCGAGTAATATTTGTAAGAAATGCAATGATAATGTTAGTAACTGGGAGATATTCAAGGGAGTTTGTGAAAGAACACAAAATAAGCTTCTACAATTGAGCAACAAAAAGGGCAGCAGCCAACTGGAAGAGTTGAATGTAAAAAGAGAGCCGTATGCAGATGAAGCCTATGACGATGGAGTGGTCATAGATGGCTCATATCCAGAGAGTGAGAGTGCTGAGGGATCAAACAAACTGCAACCCGAAGGTCCACCTATACTTACTTCTTTGGGATTGACGCCGAGGAGTGATAAGAAATATGTAGATCCCAGAATGGACTGGCAACGAGTCCATGCAATATTGGACATAGTTCAAGAAGATGAGGTCATTGACTCTTTACAAATGAGAGAGGAGTGCGATGTAGTCCATCAATCAGAACACGACTCCGACACTGATATTGAACTCAATGAGGATATAAAGCAGGAGTATCTGGAATTCAAAAAAGGATATGTTTGCAGAAATAAGAAGATACTGTCCAAGAATCCAAAACTGTTATCCTCCCATAATATAGCTAGGGCTCGGAAAGTGGTCAGGCTGAGAAAGAAACAAACTGTGTTGCCGCACAAGTATTATTCTATGCCTCAGCAAACGTGGCAGCTGTTCATTTCGGATGATCTTTTGGAGCTCATTGTGGCTGCGACAAATGCTAAAATGGAGATGAGCGAGTTGAGATACTTTCCGACAAAGATTCGTGAAATAAAAACACTTATAGGTATACTGTACTACCACGGGATAATGAGAGCAACACACCAAAAGTGTAGTGACCTCTGGAGTCATGAGTTTGGAGCGCCTTGCGTGCAGGGGGCTATGAAGTATGAGCGGTTTAAGACTTTGCTCCAAAACTTGAGCTTTGAAAAAAAGGAAAATGAAACTATTATGGAGCTAGATATCATGAAACAGATGCGTCAAGTGTTTGAAATATTCGCGTTAAACTGTCGAACTTCCTTTGCAGTCGATAACACTGTTGTGATCGATGAAGTTATGGTGCCAGTGTACGGACCTTGCCCCTTCCGATACCAGATCAAAAAGAAGGAGCTGAGCTCCGGAATCAAAATGGTACTAGTAGTGGATCCTTGTAACTTTTATATAACCAATTTGGATGTAATAACGGATCCATATTTTGGAAGTGACGACATTGCGATGAAGTTGCTACAGCATTTGGCCGGTACTTACAAGACTGTCGTCATGGACAGTTGGTTTTCATCTTCAATATTAGTGGATAAGTTACTGAATGAATATAAACTATTCTCACTGGCTGCTGTAAATGAGAAGAATGAACTCCTGCCCCCACTTTTTGTATCTCATCATAGAAAAAATAGAGTTCTCTTGAATGGTTTTCTGGACGAACATGTACTTCTAATGTCCCTTATTGATTCTGATCTCAAGACTGTCAACATATTGACCAATGAACCTAAACACTACAAAAAGAGCAATGTTAATTCCATTACACCAATTTCACTGTACAAGAAACATCAATCGGCTGTGCAAGTCGTAGACGTTCTTATGCATTATTATACGACCATGCAGCATACTAATGATTGGACTCTATCCATATTTTTCATGTTGCTTAACATTGCATCTGTAAATGCTCAAGTTATGTGGACTTCTCAGTCACCGAATACGAGTATGAAGCGTCGCTTCTTTATTAGAGAGTTGGCACTGAGTCTCATGGATTCACAGTACGAACCTCTACTTGCAGAGTTAAATATTGGTTCTAAGAGAAGAAAGATGAGTATGGAACATTTGACCCCGTCATACAAGAACAGAAGACGCTGCAAGCCCTGCCATTCAATCCACAAACGAGACAGACGGACTAAGACATTCTGTATTAGATGCGGTGGTGTGGATAGCGATAATAATTACGATGACGGCGAGGACGAGCCCGCTGATGATGAACACGACGACGAGGTGAAGCAGCGGAAACCGTACTCCGACATACCCAACATGCCCGAAGTCTCCATTACTGTCATGCGACCCACGGGGGAGACGCTGCACGCAAGACAGGGGATCCAGCAGCTCGCCTCCAAGGACTGCCTCGTCTGCGGCCGCAGCTACAGGTACTCCCACAACGCCCGCCGACACGAACTAGGAGCGCACAACTTCGACCGATATACCAACAATCACCTCGCCCGGAAGTCCACCATGCAGCCCAAGCTCCGACCCAACCCCTTCAACCCCAAGGCGCGACTCATGCCCAACCCCATCAGCCACAAAATTCAGTACATGAACATGAGCATGGGCAAGCCTCTGCAGAGGAAGATCGCGCCCCAAAAAATGGTCGCCTGCCCGAAACCGATCCCGATAAAGAACGCCAAATCAAACCAAACTAATCTGCCGTACCCGCTCCGCATCAAGGCGCTGAAGGACCTTCAGATTAAGAAGAAGGAGCCTCAAATCCTGAAGACGCTTCTGACGTCGAAACCGGAGGTTCTGGTGTCGGAACCGGAAATAATGAATTCTGGCCCCGAAAGTCCGGAGACGCTGATATCCGAGCCGGAGATAGCGTCGTTCGCGGTCGAGACGATCCTGTCCGAGCCGGACGGGGATGCAGGCGGGGAACAGGACGACGACTACGACGGCGAGGAACGGAACAAGCGAGGAAACTACGACACAGTGGACATGGACTCCGAGAACGAGATAGAGATAGCGCGGCAGCGGCCCGATGACCACTACGACGGGGAGCAGAAGGAGGGCGACAAGGAGGAGTTCAATGAAAACGACGACTCCGACAAAAACAGCGCGGGCGACAACGCGGCCGACACCACCGAGACCAAACACGAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACCTCGACACAACCCCCAAGGTGCTCGACCCCGACAAGGTCTACGTCACGAAGACCCAGAGAGATTTTATAGTCAAATATCGCGATATAATTCAGCAGATTAACACGATGACCTGCCTCTGCTGCAACAGGGAACACCCCCGTCGGAAGGCGGTCATCCAGCACCTCCAGAAGAACGGCCACAAGGTCCCCAAACACACCTGCTACAACTGCGTCGTCACCTTCGGCCACATTGGCGCCCTGCTCAGCCACATGCGGGCTAACCGCTGCACCGACTTATGGAAGATCATCTACGACGAGAACGGCATAACTGACGATCGCGTGATTGAGGACGAGCCGAAGGACAGCAAGGTCGCGTACAAGGACATCTTCAACGCGAGGTCGTACGCCTGCAAGCTCTGCCCGGCGAAATTCCAGCTAAAGCAGTTCATCATGAAGCACGTCTTGGACGTCCACGAGGACGGGCAGTCGCGCGTGCAGCTGGCGTGCGTGCACTGCCGCTCGCGGTTTAAGGACAAGGCGCTGTGGAAGAAGCACATCCGCAACGGCGAGTGCACCGTGTACATCGCGTGCGACCTGTGCCCGGAGACCTTCATCACCGTGCAGGAGTTCAACGACCACGCACTGGCCGTCCACGCCGGCCACTTCGACCCCGACAGCCAGAACAAGTGCGTCGACGGCCGCCCCACCGACTGCCCCCTCTGCGGGAAGAAGAACAGCGGCTACCCCAACCTCGTGAAGCACCTCAAGATCATCCACGACGAGGAGCGGCCGCACTACTGCCGGCACTGCGACGCCAAGTTCAAGGAGGCCGGCGACCTCAACGAGCACATCTACATGGAGCACTCCGACCGCTCCGGCCGCGCCGAGCCCGACGCGGCCCTCGTCAAGGAGGAGGCGGAGGAGTACCACTACTCGTGCACCGAGTGCGACGCGATATTCGAGACCGTCGACGCCTGGACCGACCACCAGGTCGCCGAGCACGACCAGATCGCGCACCACTGCGACCAGTGCGAGAAGAAGTTCCTCCGGCCGTCCGAGCTCGCCGAGCACAAGAACACGCACCTGCGCGTCAAGTTCTACCCTTGCTCGATCTGCGCCAACTCCTACAGCACCGCCTCCCAGCTCGCCGACCACGCGCAGCGGGCGCACGCCGGCGCCGCCCCCGCCGCCGCTCCCGGCGAGAACGTGTTCCACTGCGACGTCTGCGTGCGGGGCTTCAGGAGCCGCCAGGCCTACTCCAACCACATGCGCATCCACTCGAAGCTCCCCCAGACGAACCGGCGCGCGGACCGGTCGAGCTTCGCCCCGAACATCGTCGGGAAGCCGATCCTCCAGTACCCGCTGATGCAGCAGGGATTCGGGTCGAGTCTGCCCGTCCCCAACGCGCCCTACTCGTGCGACATCTGCGGCAAGGGCTTCATGCACAAGAAGAACATCTGGAAGCACAAGAAGGTGCTGCACGCCGACCTCGTCGTCGACCGCAACGACAGCGAGGAGAACACCATGCACGCGTCCACCGAGGACGACGAGCACAACGTAGACGAGAACGGCGCGCTCTCAACGCCGCAGTTCGACAGCTTCGACTTCGGCGGCCCGCCCGCCGCCGCCCCGCCCCGCCCCGCCGCGCCCCGCGCCGCCCCCCCGCCGCCCGACGCCATGCAGTTCGCGTGCGACCTGTGCTCCAAGCGGTTCCCCCAGCGCACGAGCCTGTGGAAGCACAAGCGCGCGAAGCACGGCATCATCAACGCCGCCGCCATCGGCACCGCCGACGTCCAGCCCGCCGGCGGTGAGGGCGGCGGCCGCTCCAGCTGCACCATCTGCCGGATAACCTTCGCCGACAAGAAGTCCTACTACCGGCACAGGAAGAACGTGCACAAGTCCACCGTGCAGATGTGCAAGCTGTGTGGGCGGGCGCTCAATTCGACGCTCGAGCTGTACGAGCACCTCAAGGCGGCGCACTCCCGCGAGCTACTCGGCGACACCGCCCCGCCGCCCGCCGCCGAGCGTGACGACGACGAGGCGGAGGACGAGGGCGAGCCCGCACGCGCCGACTATCAGGCCCACTACACCTGCGACACCTGCGGCAAGCGCTTCGTCGGCCTGCTCGCGCTGCAGAACCACCGGTGCATCTCGGCCGTGCAGAACCAGCCGCAGACGTTCGACTGCGAGATCTGCCAGAAGAGCTACGTCTCCATCGCGGCGCTCAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCCGCCACCAACTCCGGCCTGTGGATGCCGCACAACAAGGTCACCAGCAAGGTGAGCAAGTTCGAGGTGGTGGACGGCGGGGCGCGGGGGGCGGGCTCGCCGGCCGGCCCCGCCGCGCTCGCTAAGCGCCGCCTGCCACCCGAGGTCGAGGTCACCGTCGTCAACCCCAACAAGCGCATGCGGCCCGACGACGTCGCCGAGCCCCCCACGCCGGCCACGCACGCCGCGCCCGGCGGTGATGACCGCTACTGCAACATCTGCGACAAGGAGTTCACCAAGCGCGCCGCGTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCCGTTTTCTGCCCCGTGTGCGACCGCAGCTTCACGCGCAAGTCGACGCTCATCGTGCACATGAGGAAGCATTACGAGGCGGAGGGGGGCGGCGGGGAGGAGGAGGACGACGGGGAGCCGGCGCACCGCGAGCACGACGACGAGTCCGGCGAGTCGGGAGAGGAAGGGGGGCGCGCGCCGCCGCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGTGTGGCCAGCCCTCGCGACCTGATCGCGCACCGCGCCATGCACGCGACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGCGGGCACTCGACCTGTCCACGCACACGCGCGCGCGCCACGCCGACAACGACAAGGTGTTCTTCCCGTGCGCGATGTGCGACCGTTTCTACATGAATAAGAAGAGCCTGCAGCGGCACATCGAGACCTCGCACTGA
Protein Sequence
MSVDYDSVCRLCLASERELLPIFPTTSSDDSEPLVLASKIKDCVSIQIEENDDLPSNICKKCNDNVSNWEIFKGVCERTQNKLLQLSNKKGSSQLEELNVKREPYADEAYDDGVVIDGSYPESESAEGSNKLQPEGPPILTSLGLTPRSDKKYVDPRMDWQRVHAILDIVQEDEVIDSLQMREECDVVHQSEHDSDTDIELNEDIKQEYLEFKKGYVCRNKKILSKNPKLLSSHNIARARKVVRLRKKQTVLPHKYYSMPQQTWQLFISDDLLELIVAATNAKMEMSELRYFPTKIREIKTLIGILYYHGIMRATHQKCSDLWSHEFGAPCVQGAMKYERFKTLLQNLSFEKKENETIMELDIMKQMRQVFEIFALNCRTSFAVDNTVVIDEVMVPVYGPCPFRYQIKKKELSSGIKMVLVVDPCNFYITNLDVITDPYFGSDDIAMKLLQHLAGTYKTVVMDSWFSSSILVDKLLNEYKLFSLAAVNEKNELLPPLFVSHHRKNRVLLNGFLDEHVLLMSLIDSDLKTVNILTNEPKHYKKSNVNSITPISLYKKHQSAVQVVDVLMHYYTTMQHTNDWTLSIFFMLLNIASVNAQVMWTSQSPNTSMKRRFFIRELALSLMDSQYEPLLAELNIGSKRRKMSMEHLTPSYKNRRRCKPCHSIHKRDRRTKTFCIRCGGVDSDNNYDDGEDEPADDEHDDEVKQRKPYSDIPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNHLARKSTMQPKLRPNPFNPKARLMPNPISHKIQYMNMSMGKPLQRKIAPQKMVACPKPIPIKNAKSNQTNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFAVETILSEPDGDAGGEQDDDYDGEERNKRGNYDTVDMDSENEIEIARQRPDDHYDGEQKEGDKEEFNENDDSDKNSAGDNAADTTETKHEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDTTPKVLDPDKVYVTKTQRDFIVKYRDIIQQINTMTCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANRCTDLWKIIYDENGITDDRVIEDEPKDSKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCRSRFKDKALWKKHIRNGECTVYIACDLCPETFITVQEFNDHALAVHAGHFDPDSQNKCVDGRPTDCPLCGKKNSGYPNLVKHLKIIHDEERPHYCRHCDAKFKEAGDLNEHIYMEHSDRSGRAEPDAALVKEEAEEYHYSCTECDAIFETVDAWTDHQVAEHDQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICANSYSTASQLADHAQRAHAGAAPAAAPGENVFHCDVCVRGFRSRQAYSNHMRIHSKLPQTNRRADRSSFAPNIVGKPILQYPLMQQGFGSSLPVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVVDRNDSEENTMHASTEDDEHNVDENGALSTPQFDSFDFGGPPAAAPPRPAAPRAAPPPPDAMQFACDLCSKRFPQRTSLWKHKRAKHGIINAAAIGTADVQPAGGEGGGRSSCTICRITFADKKSYYRHRKNVHKSTVQMCKLCGRALNSTLELYEHLKAAHSRELLGDTAPPPAAERDDDEAEDEGEPARADYQAHYTCDTCGKRFVGLLALQNHRCISAVQNQPQTFDCEICQKSYVSIAALKSHRGWHLRSPDGKAAATNSGLWMPHNKVTSKVSKFEVVDGGARGAGSPAGPAALAKRRLPPEVEVTVVNPNKRMRPDDVAEPPTPATHAAPGGDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLIVHMRKHYEAEGGGGEEEDDGEPAHREHDDESGESGEEGGRAPPPGEFTCAQCGDGVASPRDLIAHRAMHATPTKFFCNICKVYFARALDLSTHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIETSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00406079;
90% Identity
-
80% Identity
-