Csei005941.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyaniris semiargus
Gene Symbol
-
Assembly
GCA_905187585.1
Location
LR994557.1:16494009-16502862[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.016 1.2 10.1 0.6 3 23 662 683 661 683 0.90
2 22 0.053 4 8.5 0.3 1 21 908 928 908 929 0.96
3 22 6.1 4.6e+02 2.0 0.3 1 22 971 992 971 994 0.82
4 22 0.051 3.9 8.6 0.8 3 21 1005 1023 1003 1024 0.94
5 22 0.4 30 5.8 0.0 3 23 1033 1054 1031 1054 0.89
6 22 0.11 8.2 7.6 0.1 3 23 1074 1095 1072 1095 0.96
7 22 0.0041 0.31 12.0 3.0 1 23 1101 1124 1101 1124 0.95
8 22 0.08 6.1 8.0 0.0 1 23 1148 1171 1148 1171 0.90
9 22 0.017 1.3 10.1 3.4 1 23 1176 1198 1176 1198 0.97
10 22 0.021 1.6 9.8 0.0 1 23 1204 1227 1204 1227 0.94
11 22 0.0014 0.11 13.5 1.9 1 23 1241 1263 1241 1263 0.98
12 22 0.00016 0.012 16.5 1.8 1 23 1308 1331 1308 1331 0.97
13 22 0.00029 0.022 15.6 1.2 1 23 1398 1421 1398 1421 0.95
14 22 0.004 0.3 12.1 1.4 2 23 1448 1470 1447 1470 0.95
15 22 0.42 32 5.7 0.1 2 23 1476 1498 1475 1498 0.93
16 22 0.0045 0.34 11.9 0.5 1 21 1537 1557 1537 1558 0.94
17 22 0.0048 0.36 11.8 0.1 1 23 1568 1590 1568 1590 0.93
18 22 8e-05 0.0061 17.4 0.3 2 23 1678 1700 1678 1700 0.93
19 22 1.6e-07 1.2e-05 25.9 1.0 3 23 1707 1727 1706 1727 0.98
20 22 0.25 19 6.4 0.0 1 23 1773 1795 1773 1795 0.97
21 22 0.023 1.7 9.7 0.6 1 23 1801 1824 1801 1824 0.95
22 22 0.00017 0.013 16.4 0.8 1 23 1832 1855 1832 1855 0.97

Sequence Information

Coding Sequence
ATGAGTGTGGATTATGATAGTGTTTGTAGACTGTGCTTAGCATCCGAACGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCCCTCGTCCTCGCTTTGAAAATCAAAGATTGCGTGTCCATACAGATCGAGGAGAATGACGATCTTCCGAGTAATATTTGCAAGAAATGCAATGATAATGTTATTAACTGGGAGATATTTAAGGGAGTTTGTGAAAGAACACAAAATAAGCTTCTACAATTGAGCAACAAAAAGGGCAGCAGCCAACTGGAAGAGTTGAATGTAAAAAGAGAGCCTTATGCAGATGAAGCCTATGACGATGGAGTGGTCATAGACGGCTCATATCCGGAGAGTGAGAGTGCTGAAGGACCAAACAAACTGCAACCCGAAGGTCCACCTATACTTACTTCTTTGGGATTGACGCCGAGGAGTGATAAGAAATATGTAGATCCCAGAATGGACTGGCAACGAGTCCATGCAATATTGGATATAGTTCAAGAAGATGAGGTCATTGACTCTTTACAAATGAGAGAGGAGTGTGATGTTGTCCATCAATCGGAACACGATTCCGGCACTGATATTGAACTCAACGAGGATATAAAACAGGAGTATCTGGAATTCAAAAAAGGATATGTTTGCAGAAATAAGAAGATACTGTCCAAGAATCCCAAACTGTTATCGTCCCATACCATAGCTAGGGCTCGGAAAATCGTCAGCTTGAGAAAGAAACAAACTGTATTGCCGCACAAGTATTACTCTATGCCCCAGCAAACGTGGCAGCTGTTCATTTCGGACGATCTTTTGGAGCTTATTGTGGCTGCGACAAATGCTAAAATGGAGATGAGCGAGTCAAGATACTTTCCGACAAAGATTCGTGAAATAAAAACACTCATAGGTATACTGTACTACCACGGGATAATGAGAGCAACACACCAAAAGTCTAGTGATCTCTGGAGTCATGAGTTCGGAGCGCCCTGTGTGCAGGGGGCTATGAAGTATGAGCGGTTTAAGACTTTGCTCCAAAACTTGAGCTTTGAAAAAAAAGAAAATGAAACTATTATGGAGCTAGATATCATGAAACAGATGCGTCAAGTGTTTGAAATATTCGCGTTAAACTGTCGAACTTCATTTGCGGTTGGTAACACTGTCGTGATTGATGAAGTTATGCTGCCAGTGTACGGACCTTGCCCCTTCCGATACCAGATCAAAAATAAGGAGCTGGGCGCGGGAATCAAAATGGTACTAGTAGTGGATCCCTGTAACTTTTATATAACAAATTTGGATGTAATAACGGATCCTTATTTTGGAAGTGACGACATTGCGATGAAGTTGCTACAGCATTTGGCCGGTACTTACAAGACTGTCATCATGGACAGTTGGTTTTCATCTTCAACATTAGTGGATAAGTTACTGAATGAATATAAACTATTCTCACTGGCTGCTGTAAATGAGAAGAATGAACTCCTGCCCCCACTTTTTGTATCTCATCATAGAAAAAATAGAGTTCTCTTGAATGGTTTTCTGGACGAACATGTACTTCTAATGTCCCTTATCGATTCTGATCTCAAGACCGTCAACATATTGACCAATGAACCTAAACACTACAAAAAGAGCAACGTTAACTCCATTACACCAATTTCATTGTACAAGAAACATCAATCGGCTGTGCAAGTCGTAGACGTTCTTATGCACTATTATACAACCATGCAGCATACTAACGATTGGACTCTGTCCATATTTTTCATGTTGCTTAACATTGCATCTGGTGTGGACAGCGATAAGGACGATTACGAGGACGGCGAGGACCAGGACGAGCCCGCTGATGATGATCACGACGAGGAGGAGGTCAAGGGGCGGAAACCGTACTCTGATATACCCAACATGCCCGAAGTCTCCATAACTGTCATGCGACCCACGGGGGAGACCCTGCACGCGAGGCAGGGGATCCAACAGCTCGCCTCCAAGGACTGCCTCGTCTGCGGCCGCAGCTACAGGTACTCCCACAACGCCCGCCGACATGAGCTCGGAGCCCACAACTTCGACCGATACACCAACAACCACCTCGCCAGGAAGTCCACCATGCAGCCCAAGCTTCGACCAAACCCCTTCAACCCCAAGGCGCGACTCATGCCCAACCCCATCAGCCACAAAATTCAGTACATGAACATGAGCATGGGCAAGCCCATGCAGAAGAAGATCATGCCCCAAAAAATGGTCGCCTGCCCGAAACCGATCCCGATAAAGAACGCCAAATCTAACCAAACTAATCTGCCGTATCCGCTCCGAATCAAGGCGCTGAAGGACCTCCAGATTAAGAAGAAGGAGCCTCAAATCCTGAAGTCGCTTCTGACGTCGAAACCGCAAGTTTTGGTGTCGGAACCGGAAATAATGAATTCCGGCCCCGAGAGTCCAGAGACGCTGATATCCGAGCCGGAGATAGCGTCGTTCGCGGTCGAGACCATCCTGTCCGAGCCGGACGGGGACGCCCAGCAGGACGACGATTACGACGGCGAGGAACAGAACAAGCGAGGCCATAACTACGACACCGTGGACATGGACTCCGAGAACGAGATAGAAATAGCGCGGCAGCGGGCCGGCGATGACTACCACGAGGAGCGGGAGCAGAAGGAGGGCGACAAGGAAGAGCACCCCCGGCGGAAGGCGGTCATCCAGCACCTCCAGAAGAACGGCCACAAGGTCCCCAAGCACACCTGCTACAACTGCGTCGTCACGTTCAGCCACATCGGCGCCCTGCTGAGCCACATGCGGGCCAACTGCTGCACCGACCTGTGGAAGATCATATACAACGAGAACGGCATAACCGACGACCAGGTGATCGAGGACGAGCCGAAGGACAACAAGGTCGCGTACAAGGACATCTTCAACGCGAGGTCGTACGCCTGCAAGCTCTGCCCGGCCAAGTTCCAGCTGAAGCAGTTCATCATGAAGCACGTCCTGGACGTCCACGAGGACGGACAGTCGCGCGTTCAGCTGGCGTGCGTGCACTGCCGCTCGAGATTCAAGGACAAGGCGCTGTGGAAGAAGCACATCCGGAACGGCGAGTGCACGGTGTACATCGCGTGCGACTTGTGCACGGAGACCTTCATAACCATGCAGGAGTTCAACGACCACGCGCTCGCCGTGCACGCCGGCCAATTCGACCCCGACAGCCAGAACAAGTGCGTCGACGGCCGCCCCACCGACTGCCCCCTCTGCGGGAAGAAGAACAGCGGCTACCCCAACCTCGTGAAGCACCTGAAGATCATCCACGACGAGGAGCGACCGCACTACTGCCAGCACTGCGACTCCAAGTTCAAGGAGGCCGGCGACCTCAACAAGCACATCTACATGGAGCACTCCGACCGCTCCATCCGGAGCACCGAGCCCGACATGTCCGTCGTCAAGGAGGAGGCGGAGGAGTACCACTACTCGTGCACCGAGTGCGACGCGATATTCGAGACCGTCGACGCCTGGACCGACCACCAAGTCGCCGAGCACGACCAGATCGCGCACCACTGCGACCAGTGCGAGAAGAAGTTCCTCCGGCCGTCCGAGCTCGCCGAGCACAAGAACACGCACCTGCGCGTCAAGTTCTACCCGTGCTCGATCTGCGCCAACTCGTACAGCACGGCCTCCAAGCTGGCCGAGCACGCGCAGCAGGTGCACCCCAACGCCGCCCCCGCCTCCGCTCCCGGCGAGAACGTCTTCCACTGCGACGTCTGCGTGCGGGGCTTCAAGAGCCGCCAGGCCTACTCCAACCACATGCGCATCCACTCGAAGCTCCCCCAGACCAACAGGCGCGCGGACCGGCGGAGCTTCGCCCCGCAGATCGTCGGGAAGCCGATCCTCCAGTACCCGCTGATGCAACAGGGGTTCAGGTCGAACCTTCCCGTCCCCAACGCGCCCTACTCGTGCGACATCTGCGGCAAGGGCTTCATGCACAAGAAGAACATCTGGAAGCACAAGAAGGTGCTGCACGCCGACGTCGTCGCCGACCGCAACGACAGCGAGGAGAACACCATGCACGCGTCCACGGAGGAGGACGAGTACAACGGGGACGAGAACGGCGCGCTCTCGACGCCGCAGTTCGACAGCTTCGACTTCGGCAGCCTGCCCGCCGCCGCCCCGCCCCGCCCCGCCGCACCCCGCGCCGCCCCGCCGCCCGACGCCATGCAGTTCGCGTGCGACCTGTGCTCCAAGCGGTTCCCCCAGCGGACGAGCCTGTGGAAGCACAAGCGCGCGAAGCACGGCATCATCAACGCCTCCGCCATCGGCACCGCCGACGTCCAGCCCCTCGGCGGCGAGGGCGGCGCCGGCGGCCGCTCCAGCTGCACCATTTGCCGGATCACCTTCGCCGACAAGAAGTCCTACTACCGGCACAGGAAGAACGTGCACAAGTCCACCGTGCAGATGTGCAAGCTGTGCGGGCGGGCGCTCAACTCGACGCTCGAGCTGTACGAGCACCTCAAGGCGGCGCACTCCCGGGAGTTGCTGGGCAACACCGCCCCGCCGCCGGCCGCCGAGCGCGAGGACGAGGAGGCGGAGGACGAGGGGGAGCCCGCGCGCGCCGACCCCGCCGACTACCAGGCTCAGTACACCTGCGATACCTGCGGCAAGCGCTTCGTCGGCCTGCTCGCGCTGCAGAACCACCGGTGCATCTCGGCCGTGCAACAGCAGCCGCAGACGTTCGACTGCGAGATCTGCCAGAAGAGCTACGTCTCCATCGCGGCGCTCAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCCGCCACCAACTCCGGCCTGTGGATGCCGCACAACAAGGTCACCAGCAAGGTGAGCAAGTTCGAGGTGGTGGACGGGGGGGCGCGGGGGGCGGTCTCGCCGGCCGGCCCCGCCGCGCTCGCCAAGCGCCGCCTGCCGCCCGAGGTCGAGGTCACCGTCGTCAACCCCAATAAGCGCATGCGGGCCGACGACGCCGCCGAGCCCCCCGCGCACTCCGCGCCCGGCGGCGACGACCGCTACTGCAACATCTGCGACAAGGAGTTCACCAAGCGCGCCGCGTACCAGCGGCACATGGACGAGGTACACCAGCCCAACTCCGTGTTCTGCCCCGTGTGCGACCGCAGCTTCACGCGCAAGTCGACGCTCATCGTGCACATGAGGAAGCACTACGAGGCGGAGGAGGGCGGCGCGGCGGGCGGCGGGGAGGACGACGACGAGGCGGAGCTGGCGGCGCACCGCGAGCACGACGACGAGTCCGCCGAGTCGGGGGAGGAGGGCGGGCGCGCGCTCCCGCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCAGCCCGCGCGACCTGATCGCGCACCGCGCCATGCACGCGACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGCGGGCGCTCGACCTGTCCACGCACACGCGCGCGCGCCACGCCGACAACGACAAGGTGTTCTTCCCCTGCGCGATGTGCGACCGCTTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGACCTCGCACTGA
Protein Sequence
MSVDYDSVCRLCLASERELLPIFPTTSSDDSEPLVLALKIKDCVSIQIEENDDLPSNICKKCNDNVINWEIFKGVCERTQNKLLQLSNKKGSSQLEELNVKREPYADEAYDDGVVIDGSYPESESAEGPNKLQPEGPPILTSLGLTPRSDKKYVDPRMDWQRVHAILDIVQEDEVIDSLQMREECDVVHQSEHDSGTDIELNEDIKQEYLEFKKGYVCRNKKILSKNPKLLSSHTIARARKIVSLRKKQTVLPHKYYSMPQQTWQLFISDDLLELIVAATNAKMEMSESRYFPTKIREIKTLIGILYYHGIMRATHQKSSDLWSHEFGAPCVQGAMKYERFKTLLQNLSFEKKENETIMELDIMKQMRQVFEIFALNCRTSFAVGNTVVIDEVMLPVYGPCPFRYQIKNKELGAGIKMVLVVDPCNFYITNLDVITDPYFGSDDIAMKLLQHLAGTYKTVIMDSWFSSSTLVDKLLNEYKLFSLAAVNEKNELLPPLFVSHHRKNRVLLNGFLDEHVLLMSLIDSDLKTVNILTNEPKHYKKSNVNSITPISLYKKHQSAVQVVDVLMHYYTTMQHTNDWTLSIFFMLLNIASGVDSDKDDYEDGEDQDEPADDDHDEEEVKGRKPYSDIPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNHLARKSTMQPKLRPNPFNPKARLMPNPISHKIQYMNMSMGKPMQKKIMPQKMVACPKPIPIKNAKSNQTNLPYPLRIKALKDLQIKKKEPQILKSLLTSKPQVLVSEPEIMNSGPESPETLISEPEIASFAVETILSEPDGDAQQDDDYDGEEQNKRGHNYDTVDMDSENEIEIARQRAGDDYHEEREQKEGDKEEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRANCCTDLWKIIYNENGITDDQVIEDEPKDNKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCRSRFKDKALWKKHIRNGECTVYIACDLCTETFITMQEFNDHALAVHAGQFDPDSQNKCVDGRPTDCPLCGKKNSGYPNLVKHLKIIHDEERPHYCQHCDSKFKEAGDLNKHIYMEHSDRSIRSTEPDMSVVKEEAEEYHYSCTECDAIFETVDAWTDHQVAEHDQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICANSYSTASKLAEHAQQVHPNAAPASAPGENVFHCDVCVRGFKSRQAYSNHMRIHSKLPQTNRRADRRSFAPQIVGKPILQYPLMQQGFRSNLPVPNAPYSCDICGKGFMHKKNIWKHKKVLHADVVADRNDSEENTMHASTEEDEYNGDENGALSTPQFDSFDFGSLPAAAPPRPAAPRAAPPPDAMQFACDLCSKRFPQRTSLWKHKRAKHGIINASAIGTADVQPLGGEGGAGGRSSCTICRITFADKKSYYRHRKNVHKSTVQMCKLCGRALNSTLELYEHLKAAHSRELLGNTAPPPAAEREDEEAEDEGEPARADPADYQAQYTCDTCGKRFVGLLALQNHRCISAVQQQPQTFDCEICQKSYVSIAALKSHRGWHLRSPDGKAAATNSGLWMPHNKVTSKVSKFEVVDGGARGAVSPAGPAALAKRRLPPEVEVTVVNPNKRMRADDAAEPPAHSAPGGDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLIVHMRKHYEAEEGGAAGGGEDDDEAELAAHREHDDESAESGEEGGRALPPGEFTCAQCGDGVASPRDLIAHRAMHATPTKFFCNICKVYFARALDLSTHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIETSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00406079;
90% Identity
-
80% Identity
-