Cran016453.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- Znf48
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:55727981-55731022[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00039 0.039 14.7 0.1 2 23 109 131 108 131 0.96 2 20 9.8e-05 0.0097 16.6 0.6 1 23 137 159 137 159 0.98 3 20 7.1e-05 0.007 17.1 0.5 2 23 168 189 167 189 0.97 4 20 0.00034 0.034 14.9 1.0 1 23 195 218 195 218 0.96 5 20 0.09 9 7.3 3.2 1 19 248 266 248 268 0.97 6 20 4.5e-07 4.5e-05 24.0 0.9 1 23 276 298 276 298 0.98 7 20 4.7e-07 4.7e-05 23.9 2.1 1 23 304 327 304 327 0.98 8 20 0.0037 0.37 11.7 1.4 1 23 337 360 337 360 0.94 9 20 3.8e-06 0.00038 21.0 4.0 3 23 453 473 451 473 0.97 10 20 1.6e-06 0.00016 22.2 0.3 1 23 479 501 479 501 0.98 11 20 4.2e-05 0.0042 17.8 0.3 1 23 512 536 512 536 0.97 12 20 0.0011 0.11 13.3 1.6 1 20 542 561 542 563 0.94 13 20 1.3 1.3e+02 3.6 5.5 1 23 601 623 601 623 0.97 14 20 7.3e-06 0.00073 20.2 2.6 1 23 629 651 629 651 0.98 15 20 3.1e-07 3e-05 24.5 0.3 1 23 657 679 657 679 0.98 16 20 0.00038 0.038 14.8 2.2 1 23 685 707 685 707 0.97 17 20 6.1e-08 6.1e-06 26.7 2.6 1 23 801 823 801 823 0.98 18 20 0.00068 0.068 14.0 1.7 1 23 829 851 829 851 0.99 19 20 3.4e-05 0.0034 18.1 0.3 1 23 858 880 858 880 0.98 20 20 0.00012 0.012 16.4 4.8 1 23 886 908 886 909 0.96
Sequence Information
- Coding Sequence
- ATGCAAAGTAACACAGATCTATTTACCCCACTTCCAGTGGATATGACCACTCCAAATGGACTACTCTATCAACTCAATGATCCGGATGAGAAATATCTTAAGTCCAGTGATTTTTATCCCTTCGAAATGGATGGTTTTAGTGTGCCAGAGATCGATGATATGCCGGGTGGTATGTCTAGCCTGAGTCCAATTCCGGAGGAGACAAGTTGTTCTTTGAATGTACCTCCATTGGAGCCTCTATTTTCACCTGTAGAACCAACATCGTCTCGACGAAAATTCAATATCACAGCAATCGAGGCGATATCAGCTTCAGTTAAACAGTTGATGTGCGATTTGTGTCCGGAAACATTCTCATCGCCGCAAGTTTTACGTCTGCATAGACGTGTCCAACACATCGCAACAAAAGAATTTCGATGTCGGAAATGTCCGATTTCGTTTAATTTTGAATCGAATCTTATGTTGCACCTCGCTTCGCATGTCCCCAGTTTTAGTACGAACAAAGAGTGTCCCGAGTGTAATATGGTCTTTAAACGACTGGCCAGCTTTAAGGGTCACCTGAAATCACATCAAACAAGCGATCGCTTTAAGTGCAATCGTTGTGACAAGGAGTTCGATTTGAAGGGATACTATGAGAAGCATTTGGCAAAGGCTCATAAACCTGGTGCTGATGGGACTGTTGAGGAGATCCTTGCAAAAGTTGCGAGTAATGCCAGACCAAAAGCCAAGAAAGTGCAAGGGAAATATCGCTGCCAAACTTGTGCAAAGAATTTTCATAAGCCGTGTCTGTTGAAGCGTCATGAAGTTTGTCATACAGGTGTGAAGCCATTTCAATGCACAGAATGTGACCAGGGATTCACACAGAAAACATCATTGGCAAGGCACATGCAACTGCATCAGGGGGTTAAAGATTTCAAGTGCCCCAAATGTGGCTGCAGCTTTGCACAGAAAAACAATCTTATCGTGCACATTAAGCGAACGCATCCTGTGCTCCCGAATACTGACAAAATGTTTGCCTGCGAGTATTGTCCATGCGTATTCACAAAACTCAATAGTGTCAATCGACACAAAGCAATGATGCATCCTCAAAAGGAAAACTCTGCTGACAACGATGGATttaacgatgacgatgatgacggtGTGAATGTTGCGAAAGTCATGGAACAACTGAAAAGCTTACAGGAGTCCATGGGTATTATGGATATGCAGCCACCAGCGCTAGAACTTTCGCTAATGAAACCGCCATCGCCAGGACCAAAAGTTCGCACTGTGACGCTAGTCGATACGCTAAATCCCAAGAAGGAAAAAACTTACAAAGTAGTGAAGGAAATTCTGTACAAAGGACAACGAACCATGGCATGCACGTATTGTGATAAACAGTTCAAGAGGCAATTTGATTTGTTGCGACACCATCGTACGCACACTAAAGAGAAGCCATTCCAGTGCGAATTGTGCGACAAAAACTTCGCCACCAGGGCAGCTCTTAAAACCCATCTTAACATTCATCTTTCTTCTCAAGAAAAACCGGCAAAAGTCTATGCATGCACAGCTGCAGAATGTGGAAAACGATTTTCTTCCCTTCGCAAACTGGACATACACACAAGAACACATACAAGTTCCATATCGTACATCTGTCCGCTGTGCTCGAAAACATTTACATCTAAAGCTGGTTTCTCGGCCCATAAGCACCATCCAGAGGATAAAGAGTTTGACATAGTTCGTCCACTCCTAATGTCACCCGTTAAAGTCGAAGCGAATGCTTCAGATGAAGCCGACAAAGCCGAAGAATACGCCAAGAGAAGCCACCAGTGCTGTGTCTGTggattaaaaatgcaaaaattatcCCACTTGAGACAGCATGAAGCCACTCACAACGGAGAGAAACCTTTTAAATGTTCTATTTGCTTTAGATCCTACACGACACAAAGTTCTTTGAATCTACACTATAAAATTCACGCTGCGGAAAAGACGTACGTCTGCGAAATCTGCGATGCAAAATTCATCACGAAATCTCTCCTTAAACGACACATGATCTCGCACAGCGATGAACGCAAATTCGCTTGCCCATACTGCAACGAGCTTTTCAAAACCAATGACAACTGCAAGAACCACATTTTAACACATGCCCGCAATCTGTTGGCCACACCAGAACCTACTCCGGAAGAGGACGATTTGCAGTCACTTCAATTTGAAGATTCTCGTCCAGAAACCATAACGCAGCCCTGCGTCGCTGTTGTTCAAAGCCCACAGAGCAACCAATCACCAAAATTCATTCAACTGGAGATGGTTAAGAATTGTAAAAGGCACAATCACAGAAATTTAACCGTAGAAACAGTGAATTCGTCAAGGAAATCATCCAAGAAATCGTTAGCTCGGTCTCTGAAACAGATTAACCAGACCGGTCACCGATGTAGTGAGTGTGGCAAAACTTTCTACAAAGCCAGTGACTTGGAACGTCATTTGCGCACCCACACGAAAGAGAAGCCATTCAAATGCAGTCTATGCTCGAAGCAATTTGCTTTAATGTCCACATTGGTTCAGCATACTAAAACACATGACACTCTGAGGGAAACCTACGATTGTCAAGTGTGTGGCAAAAAGTATACTTCAAGGAAAGTCCTAGTTGTTCATCTAAGGATTCACACCGGCGAACGACCTTTTCAGTGTGGTGTTTGTAAGAAAACTTTCCGAACTTCAGGTCATAAGATATCACACATGAAGGCGCATCATAAAAAGAGGAAGTGA
- Protein Sequence
- MQSNTDLFTPLPVDMTTPNGLLYQLNDPDEKYLKSSDFYPFEMDGFSVPEIDDMPGGMSSLSPIPEETSCSLNVPPLEPLFSPVEPTSSRRKFNITAIEAISASVKQLMCDLCPETFSSPQVLRLHRRVQHIATKEFRCRKCPISFNFESNLMLHLASHVPSFSTNKECPECNMVFKRLASFKGHLKSHQTSDRFKCNRCDKEFDLKGYYEKHLAKAHKPGADGTVEEILAKVASNARPKAKKVQGKYRCQTCAKNFHKPCLLKRHEVCHTGVKPFQCTECDQGFTQKTSLARHMQLHQGVKDFKCPKCGCSFAQKNNLIVHIKRTHPVLPNTDKMFACEYCPCVFTKLNSVNRHKAMMHPQKENSADNDGFNDDDDDGVNVAKVMEQLKSLQESMGIMDMQPPALELSLMKPPSPGPKVRTVTLVDTLNPKKEKTYKVVKEILYKGQRTMACTYCDKQFKRQFDLLRHHRTHTKEKPFQCELCDKNFATRAALKTHLNIHLSSQEKPAKVYACTAAECGKRFSSLRKLDIHTRTHTSSISYICPLCSKTFTSKAGFSAHKHHPEDKEFDIVRPLLMSPVKVEANASDEADKAEEYAKRSHQCCVCGLKMQKLSHLRQHEATHNGEKPFKCSICFRSYTTQSSLNLHYKIHAAEKTYVCEICDAKFITKSLLKRHMISHSDERKFACPYCNELFKTNDNCKNHILTHARNLLATPEPTPEEDDLQSLQFEDSRPETITQPCVAVVQSPQSNQSPKFIQLEMVKNCKRHNHRNLTVETVNSSRKSSKKSLARSLKQINQTGHRCSECGKTFYKASDLERHLRTHTKEKPFKCSLCSKQFALMSTLVQHTKTHDTLRETYDCQVCGKKYTSRKVLVVHLRIHTGERPFQCGVCKKTFRTSGHKISHMKAHHKKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310447; iTF_01541590; iTF_01542373; iTF_01223639; iTF_00240987;
- 90% Identity
- -
- 80% Identity
- -