Pper030820.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:151440179-151445557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0019 0.48 12.6 0.2 3 23 110 131 108 131 0.96 2 20 0.00013 0.032 16.3 0.9 1 23 137 159 137 159 0.98 3 20 0.00013 0.032 16.3 0.9 2 23 168 189 167 189 0.97 4 20 0.00035 0.087 15.0 0.9 1 23 195 218 195 218 0.97 5 20 0.0013 0.32 13.2 3.2 1 19 250 268 250 270 0.97 6 20 7.1e-07 0.00018 23.5 0.7 1 23 278 300 278 300 0.98 7 20 7.9e-06 0.002 20.2 4.1 1 23 306 329 306 329 0.98 8 20 0.00051 0.13 14.5 1.8 1 23 339 362 339 362 0.96 9 20 5.2e-05 0.013 17.6 2.3 5 23 457 475 454 475 0.94 10 20 1e-06 0.00026 22.9 0.2 1 23 481 503 481 503 0.98 11 20 0.00072 0.18 14.0 0.2 1 23 514 538 514 538 0.94 12 20 0.00071 0.18 14.0 1.5 1 20 544 563 544 565 0.94 13 20 0.31 77 5.7 2.9 1 23 603 625 603 625 0.97 14 20 3e-05 0.0073 18.4 4.6 1 23 631 653 631 653 0.98 15 20 6.4e-06 0.0016 20.4 1.3 1 23 659 681 659 681 0.96 16 20 0.00014 0.035 16.2 3.8 1 23 687 709 687 709 0.98 17 20 1.2e-05 0.003 19.6 0.4 3 23 807 827 806 827 0.93 18 20 9.8e-05 0.024 16.7 1.6 1 23 833 855 833 855 0.97 19 20 4.9e-05 0.012 17.7 0.4 1 23 862 884 862 884 0.97 20 20 0.00018 0.046 15.9 4.7 1 23 890 912 890 913 0.96
Sequence Information
- Coding Sequence
- atgcaaaacaaCACTGATCTGTTTACTCCACTCCCAGTGGATATGACCACTCCAAATGCACTACTCTACCAACTCAATGATTCGGCGGAGAAGTTTCTTAAATCAAATGAATTCTATGCCTTTGAGTTGGATAGTTTTACGGTGCCGGAGATTGACGATATACCGGCTGTTATACCGAGCTTAAGTCCAATACAGGATGAGGCAAGTTGTTCCTTAAATGTACCTCCACTGGAGACGCTATTCTCTTCTGTTGAACCAGCAGTAAGTGGGTCGGAATTCATAAAAACCGCTGTGGAGGAGAATTCAACTCCTGTTAAGCAGCTGGCATGTGATTTGTGTTCGGAGACCTTCTCATCGGCACAGGTCCTGCGTTTGCACAGACGTGTCCAACATATATCGACCAAAGAATTCCGCTGTCGTAAATGTCCTACATCGTTTAACTTTGAATCGAATTTACTCCTCCACTTGGCTTCGCATGTTTCCAGTTGTAGTACGAACAAGGAGTGCCCCGAGTGTAAGATGGTCTTCAAACGGATCTCCAGCTTTAAGGGCCACCTAAAGTCCCATCAGACAAGTGATCGATTTAAGTGCAATCGCTGTGACAAGGAGTTCGATTTGAAGGGGTACTACGAGAAACATTTGGCAAGGGCACACAAACCAGGGGCTGATGGGACTGTTGAGGAGATTCTTGCAAAAGTTGCGACTAGTGGCAGAAGTCGACCAAAAACTAGGAAACCGCAGGGAAAATACACCTGCCAAACTTGTGGGAAGCACTTCTATAAGCCCTGCCTATTGCAGCGTCATGAAGTTTGTCATACTGGTGCGAAGCCATTTCAATGCACCGAATGTGATCAGGGATTCACACAGAAAACATCATTAGCGAGGCACATGCTGCTGCATCAAGGCGTCAAGGATTTCAAATGCCCCAAGTGCAAATGTAGCTTTGCACAAAAGAACAATCTTATTACGCACATCAAACGCACTCATCCGATGTGCCCGAATTTGGATGATATGTTCGCTTGTGAACACTGTCCGTGTGTGTTCACCAAACTAAACAGTGTCAATCGCCATATGGCGATGGTGCATCCGAAAAGAGAAAATTCTGCTAACAACGACTGCTTtaacgatgacgatgatgataatGTGAATGTTGCTAGGGTAATGGAGCAATTGAAGAGTTTTCAAGAGTCCATGGGCATTATGGATATGCAACCACCAGCGTTAGAACTTTCTATGATGAAACCACCATCGCCTGGACCAAAAGTTCACACTGTAACGCTGGTTGATACGTTAAATCCCAATAAGGAGAAGACCTATAAAGTGGTGAAAGAAATCTTATACAAAGGACAGCGAACGATGGCATGCATTTATTGCGATAAACCGTTCAAGAGACAATTCGATTTGCTAAGgCACCATCGTACTCATACTAAGGAGAAGCCATTTCAATGTGATATCTGTAAGAAAAACTTTGCAACAAGTGCAGCGCTTAAAGTTCATATGACTATCCATATATCTTTCCAAGAAATGCCGGCAAAAGTCTATGCATGCGCGGCGGCCGAATGTGGTAAACGATTCTCTTCCATGCGAAAGCTGGACATCCACACCAAAACTCACACGAGTTCCATATCATACATTTGTCCGCTATGCTCGAAAACTTTCACATCAAAAGCAGGCTTCTCTGCCCACAGACATCACCTAGAGGATAAAGAGTTTGATACGGTTCGTACACTTCTAATGCCACCGGTCAAAGTCGAATCAGATATCGCAGAGGACGAACACAAAGCCGAAGAGTACGCCAAGAGAATCCATCAGTGTTATGTCTGCGGTGTGAAAATGCAAAAGCTATCACACTTGAGACAGCATGAAGCCACTCACAAGGGAGAGAAACCTTTCAAGTGTACCATTTGCTTTAGatcCTACACAACACAAAGTTCGCTCAATCTGCACCATAAAATCCATTCTGCCGAAAAACCTCACATCTGTCAAATGTGCGACGCAAAGTTCATAACACAGTCTCTGCTCAAGCGGCATATGATTTCACACAGCAATGAACGTAATTTTTCCTGTCCATACTGTACTGAACGTTTCAAAACCAGCGACAACTGCAAGAATCACATTCTAACACATGCTCGCAACCTGCTGGCAACACCAGAACCACTTCCAGAAGAGGAACATCTACAGACAACTAGAGTAGAAGATGATCCTACTCCAGAAACCATCTCACAGCCATACATTGCGGTTGTTGAAAGCCTTCAAAAGAATTTGTCACCGAAATTCATTCAACTGGAGATGGTTAAGAATTGTAAAAAGCATAATCATAAAAATTTAAGCATCGAAACAGTGGCGAATTCACCGAAGAAGTCGTCAAAGAAATCACTGGCTCGATCCTTGAAACAAATTAGTCAAACTGGACGTCAATGCATAGAGTGTGGGAAAACTTTCTACAAAGCCAGTGATTTGGAACGCCACGCACGGACTCATACGAAAGAGAAGCCATTCGATTGCAAACAATGCTCGAAACGATTTGCTTTGATGTCCACTCTGGTTCAGCATATGAAAACGCATGATATTCTTAGGGAGACATTTGATTGTCAAGTTTGTGGCAAGAAGTATACCTCGAGGAAGGTTCTGGTTGTGCATTTAAGGATTCACACGGGTGAGCGACCATTTCAGTGTGCTgtgtgcaagaaaacctttcgAACTTCAGGTCATAAGATATCACATATGAAGGCTCATCATAAAAAAAGGAAGGGAGGAAGTGCTGTTTGGGTGATGAGAGATACTAACTGA
- Protein Sequence
- MQNNTDLFTPLPVDMTTPNALLYQLNDSAEKFLKSNEFYAFELDSFTVPEIDDIPAVIPSLSPIQDEASCSLNVPPLETLFSSVEPAVSGSEFIKTAVEENSTPVKQLACDLCSETFSSAQVLRLHRRVQHISTKEFRCRKCPTSFNFESNLLLHLASHVSSCSTNKECPECKMVFKRISSFKGHLKSHQTSDRFKCNRCDKEFDLKGYYEKHLARAHKPGADGTVEEILAKVATSGRSRPKTRKPQGKYTCQTCGKHFYKPCLLQRHEVCHTGAKPFQCTECDQGFTQKTSLARHMLLHQGVKDFKCPKCKCSFAQKNNLITHIKRTHPMCPNLDDMFACEHCPCVFTKLNSVNRHMAMVHPKRENSANNDCFNDDDDDNVNVARVMEQLKSFQESMGIMDMQPPALELSMMKPPSPGPKVHTVTLVDTLNPNKEKTYKVVKEILYKGQRTMACIYCDKPFKRQFDLLRHHRTHTKEKPFQCDICKKNFATSAALKVHMTIHISFQEMPAKVYACAAAECGKRFSSMRKLDIHTKTHTSSISYICPLCSKTFTSKAGFSAHRHHLEDKEFDTVRTLLMPPVKVESDIAEDEHKAEEYAKRIHQCYVCGVKMQKLSHLRQHEATHKGEKPFKCTICFRSYTTQSSLNLHHKIHSAEKPHICQMCDAKFITQSLLKRHMISHSNERNFSCPYCTERFKTSDNCKNHILTHARNLLATPEPLPEEEHLQTTRVEDDPTPETISQPYIAVVESLQKNLSPKFIQLEMVKNCKKHNHKNLSIETVANSPKKSSKKSLARSLKQISQTGRQCIECGKTFYKASDLERHARTHTKEKPFDCKQCSKRFALMSTLVQHMKTHDILRETFDCQVCGKKYTSRKVLVVHLRIHTGERPFQCAVCKKTFRTSGHKISHMKAHHKKRKGGSAVWVMRDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00389797;
- 90% Identity
- -
- 80% Identity
- -