Basic Information

Insect: Brachyopa scutellaris
Gene Symbol: Sall1
Assembly: GCA_949775065.1
Location: OX459115.1:94140073-94143089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0039 0.91 11.7 0.1 2 23 98 120 97 120 0.95

2 20 1.5e-05 0.0035 19.2 1.6 1 23 126 148 126 148 0.98

3 20 0.00013 0.03 16.3 0.7 2 23 157 178 156 178 0.97

4 20 0.00035 0.083 14.9 1.0 1 23 184 207 184 207 0.96

5 20 0.0009 0.21 13.7 3.2 1 19 239 257 239 259 0.96

6 20 1.4e-06 0.00032 22.5 1.0 1 23 267 289 267 289 0.98

7 20 1.6e-05 0.0037 19.2 3.2 1 23 295 318 295 318 0.98

8 20 0.00014 0.032 16.2 1.2 1 23 328 351 328 351 0.97

9 20 2.2e-05 0.0053 18.7 3.1 3 23 445 465 443 465 0.97

10 20 3e-06 0.0007 21.5 0.4 1 23 471 493 471 493 0.97

11 20 0.00034 0.08 15.0 0.2 1 23 504 528 504 528 0.97

12 20 0.00037 0.087 14.9 0.4 1 19 534 552 534 555 0.94

13 20 1.4 3.2e+02 3.7 5.5 1 23 594 616 594 616 0.97

14 20 7.3e-06 0.0017 20.2 1.9 1 23 622 644 622 644 0.98

15 20 1.9e-06 0.00044 22.1 0.7 1 23 650 672 650 672 0.98

16 20 0.001 0.24 13.5 2.1 1 23 678 700 678 700 0.97

17 20 1.3e-06 0.00029 22.6 1.5 1 23 795 817 795 817 0.98

18 20 0.0028 0.66 12.1 1.1 1 23 823 845 823 845 0.98

19 20 4.7e-05 0.011 17.7 0.4 1 23 852 874 852 874 0.97

20 20 1.7e-05 0.0039 19.1 4.7 1 23 880 902 880 903 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0039	0.91	11.7	0.1	2	23	98	120	97	120	0.95
2	20	1.5e-05	0.0035	19.2	1.6	1	23	126	148	126	148	0.98
3	20	0.00013	0.03	16.3	0.7	2	23	157	178	156	178	0.97
4	20	0.00035	0.083	14.9	1.0	1	23	184	207	184	207	0.96
5	20	0.0009	0.21	13.7	3.2	1	19	239	257	239	259	0.96
6	20	1.4e-06	0.00032	22.5	1.0	1	23	267	289	267	289	0.98
7	20	1.6e-05	0.0037	19.2	3.2	1	23	295	318	295	318	0.98
8	20	0.00014	0.032	16.2	1.2	1	23	328	351	328	351	0.97
9	20	2.2e-05	0.0053	18.7	3.1	3	23	445	465	443	465	0.97
10	20	3e-06	0.0007	21.5	0.4	1	23	471	493	471	493	0.97
11	20	0.00034	0.08	15.0	0.2	1	23	504	528	504	528	0.97
12	20	0.00037	0.087	14.9	0.4	1	19	534	552	534	555	0.94
13	20	1.4	3.2e+02	3.7	5.5	1	23	594	616	594	616	0.97
14	20	7.3e-06	0.0017	20.2	1.9	1	23	622	644	622	644	0.98
15	20	1.9e-06	0.00044	22.1	0.7	1	23	650	672	650	672	0.98
16	20	0.001	0.24	13.5	2.1	1	23	678	700	678	700	0.97
17	20	1.3e-06	0.00029	22.6	1.5	1	23	795	817	795	817	0.98
18	20	0.0028	0.66	12.1	1.1	1	23	823	845	823	845	0.98
19	20	4.7e-05	0.011	17.7	0.4	1	23	852	874	852	874	0.97
20	20	1.7e-05	0.0039	19.1	4.7	1	23	880	902	880	903	0.96

Sequence Information

Coding Sequence: ATGCAAAATAACACCGACCTGTACACACCACTCCCAGTGGATATGTCCACACCAAATGCACTACTCTACCAACTCCATGATTCGGATGAGAAATTTCTCAAATCAAATGATTTCTATGCTTTTGAAATGTGTAACTTTACTGTGCCTGAAATCGATGATATTCCATCCGCTATATCCAGCTTAAGTCCTATTGTGGACGAGGCATTAAATGTACCTCCACTGGATCCAATATTTTCTTGTGTTGCACCAGTAGTGGAACAACCGTTTGCAGACGTCGAAGAGCAACAATTGATATGCGATTTGTGTCCGGAGACATTCTCATCGGTTCAGGTTTTGCGTTTGCATAGACGTGTGCAACACATTTCAACTAAAGAATTCCGCTGCCGTAAATGCCCGACGTCGTTTAATTTCCAATCGAATCTTCAACTACACCTGGCTTCGCATGTTTCCAGTTGTAGTACGAAAAAAGAGTGTCCCGAGTGTAAAATGGTTTTCAAACGCCTCGCTAGTTTTAAGGGCCACCTTAAGTCACATCAGACAAACGATCGGTTTAAGTGCAATCGTTGTGATAAAGAGTTCGACTTGAAGGGTTACTACGAGAAACACTTGGCAAAGGCTCACAAACCAGGCGCCGATGGAACTGTTGAGGAGATCCTTGCTAAGGTCgcaAATGGTGCCAGATGTAGAGTGAAAACTAAGAAATCGCAGGGCAAATATCATTGCCAAACTTGTGGAAAGAATTTCACTAAACCGTGCCTTCTGAAACGTCATGAAGTTTGCCACACCGGAGCCAAGCCGTTTCAATGCACAGAATGTGACATGGGATTCACACAGAAAACCTCTTTATCAAGGCACATGCTCCTGCACCAAGGCGTTAAGGAATTTAAATGCCCCAAATGTTATTGCAGCTTTGCACAGAAGAACAACCTTATCGTGCACATCAAGCGTACCCATCCGATACTTCCGAACATGGATAAGATGTTCGAATGTGAGTACTGTCCATGTGTGTTCACCAAGCTGAACAGTGTCAATCGGCATATGGCGATGATGCATCCAGATAGGGGAAATGCGCCCGACAACGACGGGTtcaacgatgatgatgatgatgataatgtgAATGTTGCTAGGGTAATGGAGCAGTTAAAGAGTTTTCAGGAGTCCATGGGTATTATGGATATGCAGCCACCGGCGTTAGAACTTTCGCTTATGAAACCACCATCGCCTGGACCACAAGTCCGTACTGTGACGCTTGTAGATACGTTAAATCCCACAAAGGAAAAGACATATAAATTAGCGAAAGAAATTCGATACAAGGGACAGCGCACAATAGCATGCATGTACTGTGATCGGCAGTTTAAAAGACAATTCGATTTGCTAAGACACCATCGTACTCACACCAAAGAGAAGCCATTCAAGTGTGACATCTGCGAGAAGAACTTTACTACAAAAGCAGCGCTTAAACTTCATCTTGATATTCATCGTTCTTCACAAGAGAAGCCAACAAAAGCCTATGTCTGCGCGGCTGTAGAATGCGGAAAACAATTTTCTTCCTTGCGGAAGCTAGACATACACACTAGAAGTCATACGAGCTCTATAACATACATTTGCCCAGTTTGTTCGAAAACATTCACATCTAAAGCTGGCTTCTCTGCCCATGAACACCAACCGGAGGATAAGGAGTTTGATATGCTTCGTCCACTTCTACTGTCACCAGTTAAACTCGCATCTGATGCCGCTGAGGCTGAAGATAAAGCCTCCGAAGAGTACTCCCAGCGAACCCATCAGTGTTGTGTCTGTggattaaaaatgcaaaaactttCGCACTTAAGACAACATGAAGCTACTCACACGGGAGAGAAGCCCTTCAAGTGTAACATTTGCTTAAGATCGTATACAACACAAAGCTCCCTCAATTTGCATCGGAAAATCCACGCAGCCGAGATGAATTACAACTGTGAAATCTGCGAAGCGAAGTTTATAACAAGATCACTACTTAAGCGACACATGAACTCGCACAGCGATGAACGTAAATTCGCGTGTCCATATTGCAGCGAGCTTTTTAAAACCAATGACAATTGCAAAAATCACATTTTGACGCATGCTCGTAATCTGTTGGCAACTTCAGAACCGCCTTTAGAGGAAGAAGATGCGCGGTCAtctaaaattgaagaaattcCTTCCGCCACTATCTCTCAGCCATGTATTGCAGTTGTCCAAAGCCCGCAAAAGAATCTATCACCGAAATTCATTCAACTGGAAATGGTGAAGAATTGTAAAAAGCACTCACATCGAAATTTCACCATCGAAACACTGCCTAATGCGCCGAAGAAGTCAGCGAAGAAATCGCTAACGCTAGCTTTGAAAAAAATCAGTCAAACCGGACACCAATGCGGAGAATGTGAGAAAACTTTCTACAAAGCGAGCGATTTGGAACGTCACGCACGCACCCACACCAAAGAGAAACCATACGATTGTAGCTTGTGTTCGAAACAATTCGCCTTGATGTCCACATTGGTTCAGCATAAGAAAACACATGACACACTAAGGGAGACCTTTGATTGTCAGGTGTGTGGCAAGAAGTATACTTCCAGGAAGGTTTTGGTTGTACATTTAAGGATTCACACGGGCGAACGTCCATTTCAGTGTAATGTGTGCGATAAGACTTTCAGAACTTCAGGTCATAAGATATCACATATGAAGGCGCATCATAAGAAGAGGAAGTGA
Protein Sequence: MQNNTDLYTPLPVDMSTPNALLYQLHDSDEKFLKSNDFYAFEMCNFTVPEIDDIPSAISSLSPIVDEALNVPPLDPIFSCVAPVVEQPFADVEEQQLICDLCPETFSSVQVLRLHRRVQHISTKEFRCRKCPTSFNFQSNLQLHLASHVSSCSTKKECPECKMVFKRLASFKGHLKSHQTNDRFKCNRCDKEFDLKGYYEKHLAKAHKPGADGTVEEILAKVANGARCRVKTKKSQGKYHCQTCGKNFTKPCLLKRHEVCHTGAKPFQCTECDMGFTQKTSLSRHMLLHQGVKEFKCPKCYCSFAQKNNLIVHIKRTHPILPNMDKMFECEYCPCVFTKLNSVNRHMAMMHPDRGNAPDNDGFNDDDDDDNVNVARVMEQLKSFQESMGIMDMQPPALELSLMKPPSPGPQVRTVTLVDTLNPTKEKTYKLAKEIRYKGQRTIACMYCDRQFKRQFDLLRHHRTHTKEKPFKCDICEKNFTTKAALKLHLDIHRSSQEKPTKAYVCAAVECGKQFSSLRKLDIHTRSHTSSITYICPVCSKTFTSKAGFSAHEHQPEDKEFDMLRPLLLSPVKLASDAAEAEDKASEEYSQRTHQCCVCGLKMQKLSHLRQHEATHTGEKPFKCNICLRSYTTQSSLNLHRKIHAAEMNYNCEICEAKFITRSLLKRHMNSHSDERKFACPYCSELFKTNDNCKNHILTHARNLLATSEPPLEEEDARSSKIEEIPSATISQPCIAVVQSPQKNLSPKFIQLEMVKNCKKHSHRNFTIETLPNAPKKSAKKSLTLALKKISQTGHQCGECEKTFYKASDLERHARTHTKEKPYDCSLCSKQFALMSTLVQHKKTHDTLRETFDCQVCGKKYTSRKVLVVHLRIHTGERPFQCNVCDKTFRTSGHKISHMKAHHKKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389797;
90% Identity: -
80% Identity: -