Cdum025970.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:6662173-6663738[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.001 31 5.5 0.1 26 48 78 100 75 106 0.90 2 8 0.19 5.6e+03 -1.7 0.0 25 48 107 130 99 137 0.80 3 8 9.8e-05 3 8.8 0.3 21 48 162 189 157 194 0.88 4 8 0.1 3e+03 -0.8 0.0 25 48 196 219 190 221 0.81 5 8 3e-06 0.092 13.6 0.0 23 44 253 274 246 280 0.90 6 8 0.0006 18 6.3 0.3 16 48 314 346 312 350 0.86 7 8 0.00047 14 6.6 1.0 24 48 350 374 347 377 0.90 8 8 0.0044 1.3e+02 3.5 0.4 22 48 378 404 375 409 0.87
Sequence Information
- Coding Sequence
- ATGGAACAAGAAATAGAAGAAATTTACATAAAGACCGACATAGCACAATTAGAGGTTGAAGTCAACTTAAACCCGTACCAAGCACCAGAGGAAGTATTCGGAATCAAAACGGAAGACCCAGCAAAGAAAGTGTCTGCCAGTGAAGAAAGGGATGAAGATCTTGAACCTACAAATACTGAAACTGAACCAATAATTGGTAAAGTATACGAAAATGGGAAGGTGAATAGGCTCCAATGTCCACAGTGCGAGAACACCTTCAAAAATCGAGCAAATTTAAAGCAGCATCTAAAATTTGTCCACTCTTCTGAGGATGATATCGTTGAATGTGAGAAATGCTTCCGAACTTTCAAGTCCGTAGGGCATTTGCGGTCGCACATACATTCAGTACATGCTGAGGAGAAAGAAGTGAAGTGTGACCACTGTGACAAAGTTTTTTTGAACAAGAAGAGGTTGAATAACCATATTTTTTACTCCCACCCAGAACCGGAAGAGAGTGTGAACTGTAGCATATGCTCTAAAGTTTTTAAGCGCAGATACAATCTTAAAATACATATGAGATTGGTCCATCCTTCCGAGGATAGATCAGTCCAGTGCCCGCACTGTGACAAAAAGTTCAAAGTTGACATGCTACTGCAACGTCATATAAAATGGAGTCATCCTCAAGACGGCATGATGTACCGGTGTCCCGAATGCGGAAGGACATTACCTTCAATAGCTTGCTTCAAAAAACATATGCAGAATGTCCACTCGGGTCTTCAAGATGCCGTTTGCAACGTCTGCTACAAAGTTTTTAAAACCATTAAGACGTTGAGGAGACATGAGAAAAATATACATGGCGGGGAGAAGGTGGAAAGCAAACCGACTAAAGTAGGAGAATTACAGTGTTCGCAATGTGATAAGAAATTCACAACTAACACTGCTTTATTCTGGCATTTTGAGAGACATCATTCGGAAAACAGAAGAAGTAACGCATGTCAAATTTGTGGGAAGGAGCTGTCGGACCATGCCAGTCTGAAACGGCATCTGGATATGGTGCATTCGGTCGAATCCGCCCGCTGTCACATATGCTCGAAAAGCTTCAAAAGCCACATGAACCTGCAGAGGCATATACGAGTCACCCACGCGCCGCCCGAGGCCGCACAAACTTGTGACGCTTGTCACAAGACCTTCAAATGCTCCATGCATCTACGGATACACGTTAACGCAGTGCATTCGAAAGATGGCACTTTCACATGTGACATATGCAACAAGGAATTCTCTTCGAAGAAATACATGTTGAAACACAAGAAGACACATGTGGATGTCAAGGAGTTTCCTTGTGGGGTGTGTAATAAGCTTTTTAAGTGTGTCAATGATGTTAAGAAACATAACAAGCGGGTGCacatgaagaaattgaagatgGAGAATGAGAAATGTGAAGATGAGTCAACGGAGCTGAGTTGCTTGAAATGTGGATCTGGTTTTGATAATGAAGAGAATCTTCATGCTCACATATTGAAGTGTGGTGATACACACGCTTTGAATTTTGTTAAGGTAGAGATTGAGGAATGTGATGAAAATGAATAG
- Protein Sequence
- MEQEIEEIYIKTDIAQLEVEVNLNPYQAPEEVFGIKTEDPAKKVSASEERDEDLEPTNTETEPIIGKVYENGKVNRLQCPQCENTFKNRANLKQHLKFVHSSEDDIVECEKCFRTFKSVGHLRSHIHSVHAEEKEVKCDHCDKVFLNKKRLNNHIFYSHPEPEESVNCSICSKVFKRRYNLKIHMRLVHPSEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFKKHMQNVHSGLQDAVCNVCYKVFKTIKTLRRHEKNIHGGEKVESKPTKVGELQCSQCDKKFTTNTALFWHFERHHSENRRSNACQICGKELSDHASLKRHLDMVHSVESARCHICSKSFKSHMNLQRHIRVTHAPPEAAQTCDACHKTFKCSMHLRIHVNAVHSKDGTFTCDICNKEFSSKKYMLKHKKTHVDVKEFPCGVCNKLFKCVNDVKKHNKRVHMKKLKMENEKCEDESTELSCLKCGSGFDNEENLHAHILKCGDTHALNFVKVEIEECDENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342435; iTF_01136009; iTF_01135028; iTF_00156487; iTF_00155535; iTF_00325653; iTF_00021533; iTF_00021880; iTF_00462621; iTF_00463036;
- 90% Identity
- iTF_00342435;
- 80% Identity
- iTF_00342435;