Ahon018874.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01069907.1:20258-24300[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.001 21 5.5 0.1 26 48 79 101 76 107 0.90 2 10 0.26 5.3e+03 -2.2 0.0 25 48 108 131 101 137 0.79 3 10 0.27 5.6e+03 -2.2 0.1 21 45 133 157 122 162 0.78 4 10 2.3e-05 0.47 10.8 0.1 21 48 163 190 157 195 0.89 5 10 0.11 2.2e+03 -0.9 0.0 25 48 197 220 191 221 0.81 6 10 0.00094 19 5.6 0.0 21 44 252 275 243 280 0.88 7 10 3.7e-05 0.77 10.1 0.5 16 48 315 347 312 350 0.92 8 10 9.9e-05 2 8.8 1.0 21 48 348 375 346 379 0.92 9 10 0.00041 8.5 6.8 0.3 22 48 379 405 376 410 0.87 10 10 0.23 4.8e+03 -2.0 0.1 24 31 410 417 405 442 0.69
Sequence Information
- Coding Sequence
- ATGGATAAAGAAATAGAAGAAATTTACGTGAAGCCCGACATCGCGCAGTTAGAAGTAGAAATCAACTTGCACCCATACCAAGCACCTGAAGAAGTATTCGGGATCAAAACCGAAAATACGATCAAAGCTCCAGTAAACGTAGAAAACGAGGAATACAACCAAAACGAGCCAAAAAATACTAAACCCATTGAAGTAATCGGTAAAGTATATGAAAACGGGAAGGTAAACAGACTACAATGTCCACAATgcgaaaatacatttaaaaatagagCAAATTTAAAACAGCACTTAAAATTTGTTCACTCATCCGAGGATGATATAGTTGAGTGTGACAAATGCTTCCGTACCTTCAAGTCCATAGGGCATTTGCGCTCTCACATTCATTCAGTACACGCCGAGGAGAAAGAAGTGAGTTGCGAGCACTGCGACAaagtattttcaaacaaaaaacggTTGAATAACCATGTTTTTTATTCACATCCTGAACCAGAGGAGAGCGTAACCTGCACAGTATGTTCCAAAGTATTTAAACGCAAATATAATCTGAAGATACATATGCGATTAGTCCATCCTTCTGAAGACAGGTCCGTACAGTGTCCACAATGCGACAAAAAGTTCAAAGTTGATATGTTGCTCCAGCGTCACATAAAATGGAGTCATCCTGAGGACGGGATGATGTATCGCTGCCCCGAGTGCGGGAGAACTTTACCCTCGATAGGCTGTTTCCGCAAACACATGCAAAACGTTCACTCCAACAACCAAGATGCGGTCTGTAAAGTCTGCAACAAAATGTTCAAAACTATGAAAACTTTGAAACGGCATGAGAAGAATATACACGGCGGGATAAAGGTTGAAACCAAACCAACCAAAGTAGGAGAATTAATGTGCTCGCAATGCGATAAGAGGTTTGCAACTCGGACAGGTTTAGTCTGGCATTTTGAGAGGCATCACTCTTCAAACAAACAGAGAAATACATGCCAAATGTGCGGTAAGGAGCTCTCCGATCCTTGTAGCTTGAAACGACATCTAGAAATGGTTCATTCCGTGCAGTCTGCTCCGTGTCATATCTGCTCGAAATCGTTCAAAAGCCACCTCAATTTGCAGAGGCACATACGAGTTACCCACGCACCTCCAGAGGCCGCGCAGACTTGTGATATTTGTAACAAAGTATTCAAATGCGCTATGCATTTAAGGATACATGTCAATGCGGTGCATTCAAAAGAAGGAACATTCACATGTGACATATGCAACAAGGAATATTCCTCGAAGAAGTATATGCTTAAGCATAAAAAAACGCATGTGGAAGTCAAAGAATTTCCTTGCGGCATTTGTAATAAACTCTTCAAATGTGTCAACGATGTCAAGAAGCACAACAAGCGGGTACACATGAAGGTTTTGAAGGCGGAGAATGAGAAATACGAAGCTATGTCTATGGAGTTGAATTGTTTGAAGTGTGGGACGGGTTTTGAGAATGAGGATAGTTTGCACACACACATTTTGAAGTGTGGTGAGTCGACACATGCTTTTAATTTTGTCAAGGTTGAGATTGAAGATGTTAGTGAAAATCAGTAG
- Protein Sequence
- MDKEIEEIYVKPDIAQLEVEINLHPYQAPEEVFGIKTENTIKAPVNVENEEYNQNEPKNTKPIEVIGKVYENGKVNRLQCPQCENTFKNRANLKQHLKFVHSSEDDIVECDKCFRTFKSIGHLRSHIHSVHAEEKEVSCEHCDKVFSNKKRLNNHVFYSHPEPEESVTCTVCSKVFKRKYNLKIHMRLVHPSEDRSVQCPQCDKKFKVDMLLQRHIKWSHPEDGMMYRCPECGRTLPSIGCFRKHMQNVHSNNQDAVCKVCNKMFKTMKTLKRHEKNIHGGIKVETKPTKVGELMCSQCDKRFATRTGLVWHFERHHSSNKQRNTCQMCGKELSDPCSLKRHLEMVHSVQSAPCHICSKSFKSHLNLQRHIRVTHAPPEAAQTCDICNKVFKCAMHLRIHVNAVHSKEGTFTCDICNKEYSSKKYMLKHKKTHVEVKEFPCGICNKLFKCVNDVKKHNKRVHMKVLKAENEKYEAMSMELNCLKCGTGFENEDSLHTHILKCGESTHAFNFVKVEIEDVSENQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342813;
- 90% Identity
- iTF_00021533;
- 80% Identity
- iTF_00021533;