Dang025925.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- -
- Assembly
- GCA_963691745.1
- Location
- OY829500.1:6225428-6227014[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0011 31 5.5 0.0 26 48 81 103 78 109 0.90 2 8 0.04 1.2e+03 0.4 0.1 25 47 110 132 103 135 0.81 3 8 0.0003 8.7 7.2 0.2 21 48 165 192 160 197 0.88 4 8 0.11 3.2e+03 -1.0 0.0 25 48 199 222 193 223 0.81 5 8 9.3e-05 2.7 8.9 0.1 23 44 256 277 249 283 0.90 6 8 0.00018 5.3 7.9 0.1 17 48 318 349 315 353 0.87 7 8 0.0002 6 7.8 0.5 23 48 352 377 349 380 0.89 8 8 0.00051 15 6.5 0.3 22 48 381 407 378 413 0.88
Sequence Information
- Coding Sequence
- ATGGACCAAGAAATAGAGCAGATCTACATAAAGCCGGACATAGCACACTTAAAAGTTGAGGTGAATCTAAATCCTTACCAAGCTCCAGAGGTAGTGTTTGGACTGAAAACAGAAGAAAAcctgaaagaaaatgttttaatcAACGAAGAGATAGATGGCAATGAGTTAGAAGGTACAAAAACCACGGAACCAGTTGAAATAATTGGTAAAGTATATGAAAATGGAAAGATAAACAGATTACAGTGTCCGCAGTGCGATAATACATTCAAAAACAGAGCAAATCTGAAGCAGCATCTGAAATTTGTACACTCCTCGGAAGATGACATTGTTGAATGTGACAAATGCTACAGAACATTTAAGTCCGTGGGTCATTTAAGGTCTCACATCCATTCGGTACATGCAGAATTAAAAGAAGTGAACTGTGAGCACTGCGGTAAAgtgtttttgaataaaaaacggTTAAATAACCATATTTTCTATTCTCACCCGGAACCAGAGGAAAGCGTCAATTGTACTGTATGTTCTAAAGTTTTTAAACGTAGATACAATCTCAAAATACATATGAGACTCGTGCATCCTTCTGAAGACAGATCTGTGCAGTGTCCGCACTGTGATAAAAAGTTCAAAGTGGATATGTTGCTTCAACGGCATATTAAATGGAGTCACCCGGAAGACGGGATGATGTATCGCTGTCCAGAATGTGGCCGAACGTTACCTTCCATTGCTTGCTTCAAAAAACACATGCAGAACGTACATTCAGGAATTCAGGATGCAGTCTGCAGTGTTTGTTGTAAAGTATTCAAAACCATCAAGACACTAAGAAGGCACGAGAAGAATATACACGGAGGTGAAAAGGTTGAAACGAAGCCAAGTAAAGTAGGAGATATACAATGCGCTCAGTGCGATAAGAAATTCACTACCAACACGGCTCTGTACTGGCATTTTGAGCGTTACCACTCTGAGAATAAACGAAGCAATGCTTGTCAAATATGTGGGAAGGAGCTCTCAGACCATGGCAGTTTAAAACGGCATCTAGAAATGGTGCATTCGCTTGAATCAGCGGGATGCCATATATGTTCGAAGACTTTTAAAAGCCACATGAACTTGCAGAGACACATCAGGGTCACTCATGCGCCGCCCGAAGCCGCCCAGACCTGTGACGTCTgcaataaaattttcaaatgcTCCATGCATCTGCGTATACACATAAACACGGTGCACTCCAAAGAGGGTACGTTCACCTGCGACATTTGTAATAAAGAGTTTTCCTCGAAGAAATACATGTTGAAGCATAAGAAAACTCATGTTGATGTCAAAGAGTTCCCCTGTGGCGTCTGTACGAAGTTATTTAAGTGTGTTAACGATGTTAAGAAGCATGCTAAGCGAGTACATATGAAAGTTAAGACCGAAACACCTGAGAAGTATGATCAAGTTGATAATATGCCCACTGAACAACTGAATTGTCTCAAATGTGGCAACACTTTTAATACCGATGAAGACTTGCATTCTCATATATTGAAGTGTGGAGATACGCACGTTCTGCCGTTTGTTAAAGTTGAAATTGAAGAAGTTGATGAAGATGTATAA
- Protein Sequence
- MDQEIEQIYIKPDIAHLKVEVNLNPYQAPEVVFGLKTEENLKENVLINEEIDGNELEGTKTTEPVEIIGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAELKEVNCEHCGKVFLNKKRLNNHIFYSHPEPEESVNCTVCSKVFKRRYNLKIHMRLVHPSEDRSVQCPHCDKKFKVDMLLQRHIKWSHPEDGMMYRCPECGRTLPSIACFKKHMQNVHSGIQDAVCSVCCKVFKTIKTLRRHEKNIHGGEKVETKPSKVGDIQCAQCDKKFTTNTALYWHFERYHSENKRSNACQICGKELSDHGSLKRHLEMVHSLESAGCHICSKTFKSHMNLQRHIRVTHAPPEAAQTCDVCNKIFKCSMHLRIHINTVHSKEGTFTCDICNKEFSSKKYMLKHKKTHVDVKEFPCGVCTKLFKCVNDVKKHAKRVHMKVKTETPEKYDQVDNMPTEQLNCLKCGNTFNTDEDLHSHILKCGDTHVLPFVKVEIEEVDEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342813;
- 90% Identity
- iTF_00462621;
- 80% Identity
- iTF_00462621;