Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402074.1:9403115-9404677[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.1e-06 0.00055 20.9 1.0 2 23 75 97 74 97 0.94

2 14 0.00066 0.044 14.8 3.3 2 23 105 127 104 127 0.95

3 14 0.0035 0.24 12.6 2.5 3 23 135 156 133 156 0.92

4 14 2.6e-07 1.8e-05 25.5 1.3 3 23 165 186 164 186 0.96

5 14 3.5e-05 0.0023 18.9 1.2 2 23 194 216 193 216 0.96

6 14 3.6e-05 0.0024 18.8 1.1 1 23 223 246 223 246 0.97

7 14 0.14 9.3 7.5 5.5 3 23 254 275 253 275 0.94

8 14 0.00065 0.044 14.9 3.2 2 23 291 312 290 313 0.94

9 14 0.00085 0.058 14.5 0.4 3 23 322 343 321 343 0.96

10 14 6.8e-06 0.00046 21.1 6.0 2 23 349 371 349 371 0.97

11 14 0.0026 0.18 13.0 4.4 2 23 379 401 378 401 0.97

12 14 2.9e-05 0.002 19.1 2.7 1 23 407 429 407 429 0.99

13 14 0.91 61 5.0 1.9 1 23 435 458 435 458 0.92

14 14 0.038 2.6 9.3 0.1 2 21 476 495 475 496 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.1e-06	0.00055	20.9	1.0	2	23	75	97	74	97	0.94
2	14	0.00066	0.044	14.8	3.3	2	23	105	127	104	127	0.95
3	14	0.0035	0.24	12.6	2.5	3	23	135	156	133	156	0.92
4	14	2.6e-07	1.8e-05	25.5	1.3	3	23	165	186	164	186	0.96
5	14	3.5e-05	0.0023	18.9	1.2	2	23	194	216	193	216	0.96
6	14	3.6e-05	0.0024	18.8	1.1	1	23	223	246	223	246	0.97
7	14	0.14	9.3	7.5	5.5	3	23	254	275	253	275	0.94
8	14	0.00065	0.044	14.9	3.2	2	23	291	312	290	313	0.94
9	14	0.00085	0.058	14.5	0.4	3	23	322	343	321	343	0.96
10	14	6.8e-06	0.00046	21.1	6.0	2	23	349	371	349	371	0.97
11	14	0.0026	0.18	13.0	4.4	2	23	379	401	378	401	0.97
12	14	2.9e-05	0.002	19.1	2.7	1	23	407	429	407	429	0.99
13	14	0.91	61	5.0	1.9	1	23	435	458	435	458	0.92
14	14	0.038	2.6	9.3	0.1	2	21	476	495	475	496	0.92

Sequence Information

Coding Sequence: ATGGAACAACAAATAGAAGAGATTTATATTAAGCCTGACATGGCACAACTAACAGTTGAAGTTAATTTAAATCCATACCAACCCCCAGAAGAAGTGTTTGGAATAAAAACAGAAGAAAATACAGAGTCAACAAATGAAGAAACTGATCTACTAGAACCTCCTAACACTATCCCCATAGAAATAGCTGGCAAAGTTTATGAAAATGGAAAAATTAACCGACTTCAATGTCCACAATGCGATAATACATTTAAAAACAGAGCAAATCTGAAGCAACACTTGAAATTTGTCCATTCTTCTGAGGACGATATTGTTGAATGCACCAAATGCTATCGGACTTTCAAATCTGTAGGCCATTTACGATCTCACATACATTCCGTACATGCTGAAGAAAAAGAAGTGAACTGCAACCACTGCGGGAAAGTATTTTTGAATAAGAAAAGATTAAACAACCATATATTTTACTCTCATCCCGAACCAGAAGAAAGTGTAGACTGCAGCATATGTTCGAAGAGTTTTAAACGGAGATACAACCTTAAAATACACATGCGTCTTGTCCATCCGTCTGAAGATAGTTCCGTACAATGCCCTCATTGCGACAAGAAGTTTAAAGTTGACATGCTACTGCAACGACATATAAAATGGAGCCATCCTCAAGACGGGATGATGTACCGTTGTCCGGAATGCGGACGGACATTACCGTCCCTCGCTTGCTTCAAAAAACATATGCAGAACGTCCACTCGGGAACAAAAGACGCCATTTGCAATGTTTGCTGCAAAGTTTTTAAAACTATGAAGACTCTGAAAAGGCACGAGAAGCATGTACACGGCGGTGAGAAGGTCGAAAGCAAGCCGAGTAAAGTAGGAGATCTGCAGTGTTCACAATGCGAAAAGAAATTTACCACAAACACAGGGTTGTTCTGGCATTTTGAGCGGCACCATTCGGAAAATAAGAGAAGTAACGCATGTCAGATTTGCGAGAAGGAACTATCGGACCACGGCAGTTTGAAGCGGCACTTGGAAATGGTGCATTCGCTCGAATCAGCTCGATGCCACATATGTTCAAAAACTTTTAAAAGCCACATGAATCTACAGAGACATATAAGAGTCACTCATGCGCCTCCTGAGGCCGCACAAACTTGTGATACTTGCAATAAGGTCTTCAAATGTTCCATGCATCTACGTATACATATAAACACGGTGCATTCAACAGAAGGTATTTTCACCTGTGACATATGTAACAAGGAGTTTGCGTCTAAAAAATACATGTTGAAACACAAAAAGACACATGTGGACGTCAAGGAGTTTCCCTGTGGAATTTGTAAGAAGTTGTTTAAGTGTGTGAATGACGTTAAGAAACATGCAAAGAGGGTGCATATGAAGAATTTAAAGATGGAAAATGAGAGGGTTGAGTCTGCGGAGTCCTTGAATTGTTTAAAATGTGAGTTGGTCTTTGGTAATGCAGAGGAACTGCACACTCATATTTTGAAATGTGGCGAAATGCATGCTATAAATTTTGTTAAAGTGGAAATAGTTGAGGAGTGTGAAGAAGATGAAAATGTTTAG
Protein Sequence: MEQQIEEIYIKPDMAQLTVEVNLNPYQPPEEVFGIKTEENTESTNEETDLLEPPNTIPIEIAGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECTKCYRTFKSVGHLRSHIHSVHAEEKEVNCNHCGKVFLNKKRLNNHIFYSHPEPEESVDCSICSKSFKRRYNLKIHMRLVHPSEDSSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSLACFKKHMQNVHSGTKDAICNVCCKVFKTMKTLKRHEKHVHGGEKVESKPSKVGDLQCSQCEKKFTTNTGLFWHFERHHSENKRSNACQICEKELSDHGSLKRHLEMVHSLESARCHICSKTFKSHMNLQRHIRVTHAPPEAAQTCDTCNKVFKCSMHLRIHINTVHSTEGIFTCDICNKEFASKKYMLKHKKTHVDVKEFPCGICKKLFKCVNDVKKHAKRVHMKNLKMENERVESAESLNCLKCELVFGNAEELHTHILKCGEMHAINFVKVEIVEECEEDENV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342813;
90% Identity: iTF_00325653;
80% Identity: -