Cbil020068.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071160.1:1929458-1932631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.011 0.74 10.9 8.1 1 23 147 170 147 170 0.96 2 19 0.00019 0.013 16.5 1.2 1 23 179 202 179 202 0.96 3 19 0.0012 0.082 13.9 0.7 1 23 214 237 214 237 0.97 4 19 0.00042 0.029 15.4 1.0 1 23 246 269 246 269 0.97 5 19 2.4e-05 0.0016 19.3 1.4 1 23 280 303 280 303 0.97 6 19 2.7e-05 0.0018 19.1 1.0 2 23 331 353 330 353 0.97 7 19 0.00017 0.011 16.6 1.5 2 23 363 385 362 385 0.96 8 19 0.006 0.41 11.7 0.3 2 19 390 407 389 410 0.93 9 19 0.0034 0.23 12.5 0.3 2 21 415 434 414 437 0.94 10 19 0.17 12 7.2 1.4 3 23 447 468 446 468 0.95 11 19 2.1e-05 0.0014 19.5 1.9 1 23 473 496 473 496 0.97 12 19 0.0008 0.055 14.5 0.6 2 23 508 530 507 530 0.93 13 19 0.23 16 6.7 2.4 1 23 554 577 554 578 0.94 14 19 1.6 1.1e+02 4.1 0.5 2 23 584 605 583 605 0.88 15 19 0.01 0.71 11.0 2.2 3 23 613 633 611 633 0.97 16 19 3 2e+02 3.3 1.1 3 23 641 663 639 663 0.89 17 19 7.7 5.3e+02 2.0 0.8 1 23 670 692 670 692 0.81 18 19 0.033 2.2 9.4 0.1 1 23 699 721 699 721 0.96 19 19 0.089 6 8.1 1.9 1 23 727 750 727 750 0.97
Sequence Information
- Coding Sequence
- ATGTCGATTAAAATAGAAGATATAAAAAAGGAACCTAATGAATTCCAAAGGAAAGATCCAACGTCATTCCTGCCAGAGGAGGAGATGTCGTACGAgttcaaaaagaaaaagaaaaaaaagaagaaacaaCAAGAGGACCCGTTCAAAGATTTGGAAATTGAGACAAATCATTTTCCAGCAGTGCCAACCTTAGCGTTAGACCCAGAAGTTAATATTAAAGTAGAAGATATTGAAGTTGAGTTGAATTTTAATGATTTTACAGACAACGAAGGGATGCTGGTTGAACCGGAGAGCCACGACGACAATCAACCGGAGCCCGCCATAAAAATAGAAGAGCAGAATCATGAGGCAGTGATACTTACCTTCGAAAACGTGGTCAACGAGAAAAAATTGCTCAATTACGAACCCCCACAAGTGAAATTAGAACCGTACAAGCCGCACATATGTAAAGTGTGCCATCTAGTGTTTAAATCTAACAAAACTCTTCACATGCACCAGAAAAGGAAGCACAAGGTGTTCAGGAAATCGTTCAAACACATATGTGACTCTTGTGGCATGTCGTACGAAACTAAAAACAGTCTGGTGGCTCATATGAAAAGAAAACATGGGCCAGACGCTCCCCCAGAAGATTTGGACGAGCATACCTGTGAGATTTGCGCTCTGGTGTTTAAAGGTGCTGCGAGACTACGAATGCATATGAGAAGAAAGCACGGAGCGTTTGAAGAATCCTTTAATTACGTTTGCAGTGAATGTGGCTTGACGTATGACAAACATCGAAGTTTAGTGGTGCATATACAGAGGAAGCATTCGGGAGTACAACCGACGTCCAACGAGTGGTTCAGCTGCCCATTTTGCCCCAAAGCGTTTACTAAAAGGGAAACGTATGTCCGTCATATACAACGAAAGCATAAAGTTAATGAAGATCCGATGGTGAAGACGGAGAACAGTGAGCTCATTGAAGGTTGTAAGAATGAGGAAACAGGAGAAATCACTTGCAAAGAGTGCCCACTCATGTTTACTTCGTTAAATTATCTAAAATTGCACATGAGACGGAAGCACAATGCTCTGAAAGAGGCGTTCCGGCTCAAATGCAGGATATGTAACCTGTCTTACGATAAATTAGAAAGTTTGAAGCGCCATATTAGAAGAAAGCATGACAGGAAAGTGCAATGCAATATTTGTAACAAACAATTCGAATCGAGAGAACTGTACATAAATCATTCGcacataaaattaatcaaagaaTGCTCAATTTGCGGTCTTATTTTCGCGTCGGAAGGAGGCCTCGCTAAACATTTACGCTGCACGCACAAAATCGACACGCCCAAGACTGTATTCTGTAACATATGCAACGAAGGTTTCCATGAAAAACGGCAACTAAAACCTCATTTACTAAAAGTGCATCTAAAGGTGTCGTAtacatgtaaatattgtaataaaatcttTAAAGCTAAGGAAAGTTATCGCCGCCATATAATTATAAAGCATCCTACGCAACGAATCATCACAACACAGTTGCAGAAATGCGAGAAGTGTCCGGAAATGTTCCGAGATGAATTTGAACTGTCTCGTCATGTTAGTTTGAAGCACGGTGATCCTGATGAGAAGGATCCCGCGTGGATCGAagtcaaaaaagaggaggttgaCTCTAAAGACTCCTTCCAGTGCACAAAGTGCTCTGAAAATTATTTAACTTGGCAAGAGTTGAAACTACATTATGAACAAAACCATCACATTGTGGAGGAAACGCAGTGCCAAGTGTGTGGACAGATCATCCCAGTAGTAGAACTACAGAAGCACATAAAAATGAAGCACACGGAAACTGTAGAGATGGACTGCAAGTACTGTGATTTCAAAACTACCTCCAAACTGAGTTTGACACAGCACACGCTGCGCCACAAAAACGCTACTACCCTCAATTGTGACTTTAATGGTTGTAGATACAAAACTTTTTACGAGGATGCTATGGAGAAACATAAGAGGAAACATGCCGATTTAGGCGTTAAGTTTCAGTGCACACAATGCCCGTTTCAGAGTATGAATaagtacattttaaaatatcatgAAGAAGCGCATGCGACGGGTCGCAAGAGATATGCCTGCGATCAGTGTGACTACGCCACTATTTTGCCAGCTAACTTAGTTCAGCATAAATACAAGCATTCAACTGAAAAAAGGTTTAAATGCGAAGTGTGCCCTTTTGCCACTAAATATAATACGTCGCTGCGTTTCCATGTTAGAAAAAAACACTGTGATCTCCCGATGAGTTAA
- Protein Sequence
- MSIKIEDIKKEPNEFQRKDPTSFLPEEEMSYEFKKKKKKKKKQQEDPFKDLEIETNHFPAVPTLALDPEVNIKVEDIEVELNFNDFTDNEGMLVEPESHDDNQPEPAIKIEEQNHEAVILTFENVVNEKKLLNYEPPQVKLEPYKPHICKVCHLVFKSNKTLHMHQKRKHKVFRKSFKHICDSCGMSYETKNSLVAHMKRKHGPDAPPEDLDEHTCEICALVFKGAARLRMHMRRKHGAFEESFNYVCSECGLTYDKHRSLVVHIQRKHSGVQPTSNEWFSCPFCPKAFTKRETYVRHIQRKHKVNEDPMVKTENSELIEGCKNEETGEITCKECPLMFTSLNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFESRELYINHSHIKLIKECSICGLIFASEGGLAKHLRCTHKIDTPKTVFCNICNEGFHEKRQLKPHLLKVHLKVSYTCKYCNKIFKAKESYRRHIIIKHPTQRIITTQLQKCEKCPEMFRDEFELSRHVSLKHGDPDEKDPAWIEVKKEEVDSKDSFQCTKCSENYLTWQELKLHYEQNHHIVEETQCQVCGQIIPVVELQKHIKMKHTETVEMDCKYCDFKTTSKLSLTQHTLRHKNATTLNCDFNGCRYKTFYEDAMEKHKRKHADLGVKFQCTQCPFQSMNKYILKYHEEAHATGRKRYACDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858811; iTF_00063816; iTF_00859720; iTF_01010614; iTF_00290912; iTF_00787882; iTF_00819396; iTF_00429256; iTF_01359086; iTF_00428373; iTF_00820310; iTF_01430134;
- 90% Identity
- -
- 80% Identity
- -