Hfuc006117.1
Basic Information
- Insect
- Hemaris fuciformis
- Gene Symbol
- -
- Assembly
- GCA_907164795.1
- Location
- OU015457.1:7516334-7519485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0091 0.75 10.9 8.1 1 23 152 175 152 175 0.96 2 19 0.0012 0.096 13.7 1.0 1 23 184 207 184 207 0.96 3 19 0.00087 0.072 14.1 1.2 1 23 219 242 219 242 0.97 4 19 0.00024 0.02 15.9 1.1 1 23 251 274 251 274 0.97 5 19 2e-05 0.0017 19.3 1.4 1 23 285 308 285 308 0.97 6 19 2.2e-05 0.0019 19.1 1.0 2 23 338 360 337 360 0.97 7 19 0.00014 0.011 16.6 1.5 2 23 370 392 369 392 0.96 8 19 0.002 0.16 13.0 0.4 2 20 397 415 396 417 0.93 9 19 0.0028 0.23 12.5 0.3 2 21 422 441 421 444 0.94 10 19 0.14 12 7.1 1.4 3 23 454 475 453 475 0.95 11 19 1.7e-05 0.0014 19.5 1.9 1 23 480 503 480 503 0.97 12 19 0.00014 0.012 16.6 0.3 2 23 515 537 514 537 0.96 13 19 0.00052 0.044 14.8 1.3 1 23 561 584 561 585 0.94 14 19 1.6 1.3e+02 3.8 0.2 2 23 591 612 590 612 0.90 15 19 0.017 1.4 10.0 2.2 2 23 619 640 618 640 0.97 16 19 2.7 2.3e+02 3.1 1.2 2 23 647 670 646 670 0.91 17 19 6.5 5.4e+02 1.9 0.8 1 23 677 699 677 699 0.81 18 19 0.0088 0.73 11.0 0.2 1 23 706 728 706 728 0.97 19 19 0.074 6.1 8.0 1.9 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGTCGATTAAAATTGAAGATATAAAAACAGAAGACATAAAGAAGGAAGTTGAAGAGATTGGTAGGAGGGATCCCACATCCTTCTTGCCCGAAGAGGAGATGTCATATGAGTTCAAAAAGAAAAAGAAAAAAAAGAAGAAAAAGCAGGAGGATCCATTCAAGGACTTGGAACTAGAAACAAACCACTTCCCAGCAGTGCCAACTTTAGCATTAGACCCAGAAGTTACTATTAAAGTTGAAGATATAGAAGTGGAGTTGAATTTTAATGATTTTTCCGACAACCAAAGCCTGTTGATGGAAGTTCCACAAAGCGAGGACAGTCAGCCCGAGCCAGCCATCAAAGTCGAAGACCAGAGCCATGAGGCAGTGATACTTACCTTCGAAAACGTCGTCAACGAAAAGAAATTGCTCAATTACACAAATCAAGAAGTTAAATCGGAACCCAATCAGTCGCACATTTGTAAAGTGTGTCATCTAGTGTTTAAATCTAATAAAACTCTTCACATGCATCAGAAAAGGAAGCACAAAGCATTTAGGAAGTCTTTCAAGCATATATGCGACTACTGTGCTATGTCATATGAGACAAAGAATAGTCTCGTTGCTCACATCAAAAGAAAACATGGGCCCGACGCCCCACCAGAAGACCTAGATGAGCATACATGCGATATCTGTGCTCTTGTGTTCAAAGGTTCTGCAAGACTTAGAATGCATATGCGCAGAAAGCATGGGGCGTTTGCTGATTCGTTCAAATATGTATGCAGCGACTGTGGATTGACATACGACAAGCACAGGAGTCTAGTTGTCCACATACAACGAAAGCACTCGGGAGTTCAACCCGTTTCCAATGAATGGTTCAGCTGCCCGTTCTGCCCTAAAGCATTTACAAAAAGGGAGACTTATGTTCGACATATACAAAGAAAACACAAGGTTAGTGAGGATCCTACTGTGAAGGCAGAGAACACCAATCCTGAGTTCCTAGAAGGATGTAGGAATGAACAAACTGGAGAGATTACTTGCAAGGAATGCCCTCTAATGTTTACGTCATTAAATTATTTAAAACTACACATGAGGAGGAAGCATAACGCACTAAAAGAGGCATTTCGGCTCAAATGCAGAATATGCAATCTATCTTACGATAAACTAGAAAGCTTAAAGCGTCATATAAGGAGAAAACACGATAGGAAAGTGCAATGCAACATATGCAACAAACAGTTTGAGACTAGAGAAATGTACATAAATCACACACATATACAATTAATCAAAGAGTGCTCAATTTGCGGTCTCATTTTTGCCTCAGAAGGAGGTCTTGCTAAGCATTTACGGTGTACTCACAAAATAGACCGGCCTAAGACTGTATTTTGTAACATATGCAACGAAGGTTTCCACGAGAAACGGCAATTAAAACCTCATTTACTAAAAGTTCACCTAAAGGTGTCATATACATGTAAATATTGTAATAAAATATTCAAAGCTAAAGAGAGTTATAGAAGGCATATTATTATAAAGCATCCATCACAGAGAATTATCAATACGCAACTGCAAAAGTGCGAGAAATGTCCAGAGATGTTTAAAGATGAATTTGAATTGTCCCGGCATGTTAATGTGATGCATACAGAACCCGATGCTGCGGACCCTGGATGGCTCGAAGTCAAAAAGGAGGAGGTAGACTCTAAAGACTCCTTCCAATGCACAAAGTGCTCTGAAGCGTACATCACATGGGCCCAGCTGAAACTTCATTATGAACAAAATCATCATGTAGCAGCAGAGACTCAGTGCCAAGTTTGTGGTGAGCTTATAACAGTGACTGAGCTATCAAAACACATCAAGATTAAGCACACGCAGACAGTCGAAATGGAGTGCAAATACTGCGAGTTCAAAACTACCTCCAAATTGAGTCTTACGCAGCACACACTGCGGCACAAAAATGCAACTACCCTACGCTGTGATTTCAACGGTTGTAGATACAAAACTTTCTATGAAGGGGCGATGGAGAAGCATAAAAGGAAACATGCTGATTTAGATGTAAAGTTTCAATGTACTCAGTGTCCGTTTCAGAGTATGAATAAGTATATATTGAAATATCATGAGGAAGCTCATGCTACCGGTCGTAAGAGGTACACTTGTGATCAGTGTGACTACGCGACTATCCTTCCAGCGAATTTGGTGCAGCATAAATATAAACACTCTTCCGAGAAAAGGTTTAAATGCGAAGTATGCCCGTTCGCAACTAAATATAATACATCATTACGTTTTCATGTTAGAAAAAAACACTGTGATCTCCCCACAAGTTGA
- Protein Sequence
- MSIKIEDIKTEDIKKEVEEIGRRDPTSFLPEEEMSYEFKKKKKKKKKKQEDPFKDLELETNHFPAVPTLALDPEVTIKVEDIEVELNFNDFSDNQSLLMEVPQSEDSQPEPAIKVEDQSHEAVILTFENVVNEKKLLNYTNQEVKSEPNQSHICKVCHLVFKSNKTLHMHQKRKHKAFRKSFKHICDYCAMSYETKNSLVAHIKRKHGPDAPPEDLDEHTCDICALVFKGSARLRMHMRRKHGAFADSFKYVCSDCGLTYDKHRSLVVHIQRKHSGVQPVSNEWFSCPFCPKAFTKRETYVRHIQRKHKVSEDPTVKAENTNPEFLEGCRNEQTGEITCKECPLMFTSLNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFETREMYINHTHIQLIKECSICGLIFASEGGLAKHLRCTHKIDRPKTVFCNICNEGFHEKRQLKPHLLKVHLKVSYTCKYCNKIFKAKESYRRHIIIKHPSQRIINTQLQKCEKCPEMFKDEFELSRHVNVMHTEPDAADPGWLEVKKEEVDSKDSFQCTKCSEAYITWAQLKLHYEQNHHVAAETQCQVCGELITVTELSKHIKIKHTQTVEMECKYCEFKTTSKLSLTQHTLRHKNATTLRCDFNGCRYKTFYEGAMEKHKRKHADLDVKFQCTQCPFQSMNKYILKYHEEAHATGRKRYTCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341555;
- 90% Identity
- iTF_00429256;
- 80% Identity
- -