Chyl021156.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- -
- Assembly
- GCA_030295005.1
- Location
- AP025386.1:5992426-5995300[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0096 0.69 10.9 8.1 1 23 152 175 152 175 0.96 2 18 0.0012 0.087 13.7 1.0 1 23 184 207 184 207 0.96 3 18 0.00092 0.066 14.1 1.2 1 23 219 242 219 242 0.97 4 18 0.00052 0.037 14.9 1.1 1 23 251 274 251 274 0.97 5 18 2.1e-05 0.0015 19.3 1.4 1 23 285 308 285 308 0.97 6 18 2.4e-05 0.0017 19.1 1.0 2 23 337 359 336 359 0.97 7 18 0.00015 0.01 16.6 1.5 2 23 369 391 368 391 0.96 8 18 0.0021 0.15 13.0 0.4 2 20 396 414 395 416 0.93 9 18 0.003 0.21 12.5 0.3 2 21 421 440 420 443 0.94 10 18 0.15 11 7.1 1.4 3 23 453 474 452 474 0.95 11 18 1.8e-05 0.0013 19.5 1.9 1 23 479 502 479 502 0.97 12 18 0.00016 0.012 16.5 0.4 2 23 514 536 513 536 0.96 13 18 0.0013 0.092 13.7 1.3 1 23 560 583 560 584 0.94 14 18 0.018 1.3 10.0 2.2 2 23 618 639 617 639 0.97 15 18 2.9 2.1e+02 3.1 1.2 2 23 646 669 645 669 0.91 16 18 6.8 4.9e+02 1.9 0.8 1 23 676 698 676 698 0.81 17 18 0.0092 0.66 11.0 0.2 1 23 705 727 705 727 0.97 18 18 0.078 5.6 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- atgtcTATTAAAATTGAGGATATAAAAACGGAAGACATAAAGAAGGAAGATGAAGAAGTTGGTAGGAGGGATCCTACATCCTTTTTGCCTGAAGAAGAGATGTCATAcgagttcaaaaagaaaaagaaaaaaaagaagaaaaagcaAGAGGATCCTTTCAAGGATTTGGAACTAGAAACAAACCACTTCCCAGCAGTGCCAACTTTAGCGCTAGACCCAGAAGTTAATATTAAAGTTGAAGATATAGAAGTGGAGTTGAATTTTAATGACttttccGACACCCAAAGCCTGTTGATGGAGATGCCACAAAGAGAGGATAGTCAGCCCGAGCCAGCCATCAAAGTGGAAGACCAGAGCCACGAGGCAGTAATACTTACCTTCGAAAACGTCATCAACGAAAAGAAATTGCTCAATTACACAAATCAAGAAGTAAAATCCGAACCTTATCAGTCACACATCTGTAAAGTGTgtcatttagtttttaaatctaataaaaccCTTCATATGCACCAGAAGAGAAAGCACAAGGCATTTAGGAAGTCTTTCAAGCATATATGTGACTACTGTGCTATGTCATATGAGACGAAGAATAGTCTCGTTGCTCACATCAAAAGAAAACATGGCCCGGACGCGCCCCCAGACGATTTAGATGAGCATACTTGCGATATTTGCGCTCTGGTGTTCAAAGGCTCTGCAAGACTTAGAATGCATATGCGGAGAAAGCATGGGGCGTTTGAAGAATCATTCAAATTTGTTTGCAGTGAATGTGGACTGACATATGACAAGCACAGAAGTCTTGTAGTCCATATACAACGAAAGCATTCGGGTGAACAACCAGTTTCCAACGAATGGTTCAGCTGCCCGTTCTGTCCTAAAGCATTTACTAAAAGGGAGACTTATGTACGTCATATACAGAGGAAGCACAAGGTTAGTGAGGATTCTGTGAAGGCAGAGAACACGAGTCCTGAAGTCCTAGAAGGATGTAGAAATGAGCAAACGGGAGAGATTACTTGCAAGGAATGTCCTCTAATGTTCACATCATTGAATTATCTAAAACTGCACATGAGGAGGAAGCATAACGCCCTAAAAGAGGCATTCCGGCTTAAATGCAGGATATGCAATCTGTCTTATGATAAACTAGAAAGCTTAAAGCGTCATATAAGGAGAAAACATGATAGGAAGGTGCAATGCAACATATGCAACAAACAGTTTGAGACTAGAGAAATGTACATAAATCACACGCATATACAATTAATCAAAGAGTGCTCTATTTGCGGTCTCATTTTCGCCTCAGAAGGAGGTCTTGCTAAGCATTTACGGTGTACCCACAAAATAGACCGGCCTAAGACTGTATTTTGTAACATATGCAACGAAGGTTTCCATGAGAAACGGCAATTAAAGCCTCATTTACTAAAAGTTCACCTAAAGGTGTCATATAcatgtaaatattgtaataagatATTCAAAGCTAAGGAGAGTTATAGAAGGCATATTATTATAAAGCATCCATCACAGAAGATTATCAATACGCAATTGCAAAAGTGTGAGAAATGTCCAGAGATGTTTAAAGATGAGTTTGAATTGTCCCGGCATGTTAATGTGACTCATACGGAGCCTGATGCCACGGACCCTGAATGGCTCGAAGTCAAAAAGGAAGAGGTAGACTCTAAAGACTCCTTCCAATGCACAAAGTGTTCTGAAGCTTACATCACATGGCCTCAGCTTAAACTTCATTATGAACAAAATCATCATGTAGCGTCTGAGACTCAATGCCAAGTTTGTGGTGAGCTTATAACCATAACTGAGCTTCCAAAACACATAAAGATTAAGCACACACAGACAGTGCAAATGGAGTGCAAATACTGCGAGTTCAAAACTACCTCCAAATTGAGTCTTACTCAGCATACACTGAGACACAAAAATGCAACTACCCTACGCTGTGACTTCAACGGTTGTAGATACAAAACTTTCTATGAAGGGGCGATGGAGAAGCATAAAAGGAAACATGCTGATTTAGGTGTGAAGTTCCAGTGCACTCAGTGTCCGTTTCAAAGTATGAATAAGTATATATTGAAATATCATGAGGAAGCTCACGCTACTGGCCGTAAGAGGTATACTTGTGATCAGTGTGACTACGCCACTATACTTCCAGCGAATTTAGTGcaacacaaatataaacacTCTTCCGAGAAGAGGTTTAAATGTGAAGTATGCCCGTTCGCAACTAAATATAATACATCATTACGTTTTCATGTTAGAAAAAAACACTGTGATCTCCCCACAAGTtga
- Protein Sequence
- MSIKIEDIKTEDIKKEDEEVGRRDPTSFLPEEEMSYEFKKKKKKKKKKQEDPFKDLELETNHFPAVPTLALDPEVNIKVEDIEVELNFNDFSDTQSLLMEMPQREDSQPEPAIKVEDQSHEAVILTFENVINEKKLLNYTNQEVKSEPYQSHICKVCHLVFKSNKTLHMHQKRKHKAFRKSFKHICDYCAMSYETKNSLVAHIKRKHGPDAPPDDLDEHTCDICALVFKGSARLRMHMRRKHGAFEESFKFVCSECGLTYDKHRSLVVHIQRKHSGEQPVSNEWFSCPFCPKAFTKRETYVRHIQRKHKVSEDSVKAENTSPEVLEGCRNEQTGEITCKECPLMFTSLNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFETREMYINHTHIQLIKECSICGLIFASEGGLAKHLRCTHKIDRPKTVFCNICNEGFHEKRQLKPHLLKVHLKVSYTCKYCNKIFKAKESYRRHIIIKHPSQKIINTQLQKCEKCPEMFKDEFELSRHVNVTHTEPDATDPEWLEVKKEEVDSKDSFQCTKCSEAYITWPQLKLHYEQNHHVASETQCQVCGELITITELPKHIKIKHTQTVQMECKYCEFKTTSKLSLTQHTLRHKNATTLRCDFNGCRYKTFYEGAMEKHKRKHADLGVKFQCTQCPFQSMNKYILKYHEEAHATGRKRYTCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341555;
- 90% Identity
- iTF_00429256;
- 80% Identity
- -