Ajug020609.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421391.1:7827772-7832441[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.68 10.9 8.1 1 23 150 173 150 173 0.96 2 17 4e-05 0.0025 18.6 1.1 1 23 182 205 182 205 0.96 3 17 0.0012 0.076 13.9 0.7 1 23 217 240 217 240 0.97 4 17 0.00086 0.054 14.4 1.0 1 23 249 272 249 272 0.96 5 17 2.4e-05 0.0015 19.3 1.4 1 23 283 306 283 306 0.97 6 17 2.7e-05 0.0017 19.1 1.0 2 23 336 358 335 358 0.97 7 17 0.00016 0.01 16.6 1.5 2 23 368 390 367 390 0.96 8 17 0.003 0.19 12.7 0.4 2 20 395 413 394 415 0.93 9 17 0.0024 0.15 13.0 0.4 2 21 420 439 419 442 0.94 10 17 0.17 11 7.1 1.4 3 23 452 473 451 473 0.95 11 17 2.1e-05 0.0013 19.5 1.9 1 23 478 501 478 501 0.97 12 17 0.00068 0.043 14.7 0.4 2 23 513 535 512 535 0.93 13 17 0.072 4.5 8.3 3.0 1 23 559 582 559 583 0.94 14 17 0.006 0.38 11.7 2.2 2 23 617 638 616 638 0.97 15 17 5.6 3.5e+02 2.4 1.0 1 23 675 697 675 697 0.81 16 17 0.021 1.3 10.0 0.1 1 23 704 726 704 726 0.96 17 17 0.088 5.6 8.1 1.9 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- atgtcCATTAAAATTGAAGACATAAAAAAGGAACCAGATGATGTATTAAGAATTCAAAGGAAAGATCCAACGTCTTTCCTACCAGAGGAGGAGATGTCGTACGAgttcaaaaagaaaaagaaaaaaaagaagaaaaagcaAGAGGATCCGTTCAAAGATTTGGAAATTGAGAGAGGTCATTTTCCAGCTGTGCCAACATTAGCGTTAGACCCTGAAGTTAATATTAAAGTTGAGGATATTGAAgtggaattaaattttaatgatTTTGCCGACAACGAAGGTCTGATGGTCGAAGCGCCGAACAGTGAGGACAGCCAACCAGAACCCGCCATAAAAGTTGAAGACCAAAGCCACGAGGCCGTGATACTCACCTTCGAGAACGTTATCAGCGAGAAAAAAATGCTCAGCTACGAAACACAAGAAGTGAAAATAGAACCGTACCAACCGCACATATGTAAAGTGTGCCATTTAGTGTTTAAATCAAACAAAACTCTTCACATGCACCAGAAAAGAAAGCATAAGGTGTTCAGGAAGTCTTTCAAGCACATATGCGACTACTGTGGTATGTCGTACGAAACGAAAAACAGTCTTGTTGCACATATTAAAAGAAAACACGGACCGGACGCTACCGCAGATGATACAGATGAACATACTTGTGAAATATGTGCTCTAGTGTTTAAAGGTGCTGCAAGACTGCGTATGCATATGCGAAGGAAGCATGGAGCATTCGAAGATGCTTTTAAACATGTTTGCAGTGATTGTGGCTTGACGTACGATAAGTATCGAAGCCTAGTTGTACACATACAGAGAAAACATTCAGGAGCAAAGCCAGTGTCTAACGAATGGTTTAGTTGTCCCTTTTGTCCGAAAGCGTTCACTAAAAGAGAAACATATGTACGTCATATACAAAGAAAGCATAAGGTGAGCGAAGAACCCACTGTGAAAACAGAAAATGCGACGCCCGAGTTCTTAGAAGGCTGCACTAATGAACAGACTGGAGAAATCACTTGTAAAGAGTGTCCACTGATGTTTACATcgttaaattatctaaaattacaTATGAGACGAAAGCACAATGCTCTAAAAGAAGCGTTCCGGCTCAAATGCAGGATATGTAACCTGTCTTATGATAAATTAGAAAGTTTGAAACGCCATATAAGGAGAAAACACGACAGGAAAGTGCAGTGCAATATTTGCAACAAACAATTTGAATCGAGAGAACTGTACATAAATCATACgcacataaaattaattaaggaaTGCTCAATTTGCGGTTTAATTTTTGCCACTGAAGGTGGTCTTGCTAAGCATTTACGTTGCACGCACAAAATCGACACACCCAAGACTGTATTCTGTAACATATGCAACGAAGGTTTCCACGAGAAGCGGCAATTAAAACCTCATTTACTAAAAGTGCACCTAAAGGTGTCTTATACgtgtaaatattgtaataagatATTTAAAGCTAAGGAGAGTTATCGTCGACACATTATTATAAAGCATCCAATGCAACGAATCATGTCCACAAATTTGCAGAAGTGTGAAAAGTGTCCGGAGATGTTCAAAGATGAGTTTGAACTGTCTCGTCACGTGAGTTTGATGCATGCAGTGCCCGATGAGAAAGATCCCGCGTGGGTTGAagtcaaaaaggaggaggttgaCTCTAAAGACTCCTTCCAGTGCACAAAGtgctctgaaacttatttaacCTGGCAACAATTGAAGTTGCATTACGAACAAAACCATCACGTTACTGAGGAAACGCAGTGTCAAGTGTGTGGCAACCTCGTACCAATAACAGAACtacaaaaacacataaaaataacacacaCCGACACAGTGGAGATGGAGTGCAAGTACTGTGATTTCAAAACTACCTCCAAATTGAGTTTGACACAGCACACACTTCGCCATAAGAATGCGACTACCCTCCACTGTGATTTTAATGGATGTAGGTACAAAACTTTCTACGAGATTGCAATGGACAAACATAAGAGGAAGCATGCCGATTTAGGAGTTAAATTTCAGTGTACCAAATGCCCATTTCAGAGtatgaataaatacatactaAAATATCATGAGGAAGCTCATACGACCGGTAAAAAGAGGTATGCTTGCGACAAATGTGATTATGCTACTATCCTACCGGCAAATCTTGTTCAACATAAGTACAAGCATTCGGCAGAAAAAAGGTTTAAATGTGAAGTGTGTCCGTTCGCTACGAAATATAACACGTCATTGCGTTTCCATGTTAGAAAAAAACATTGTGATCTCCCGAGTTGa
- Protein Sequence
- MSIKIEDIKKEPDDVLRIQRKDPTSFLPEEEMSYEFKKKKKKKKKKQEDPFKDLEIERGHFPAVPTLALDPEVNIKVEDIEVELNFNDFADNEGLMVEAPNSEDSQPEPAIKVEDQSHEAVILTFENVISEKKMLSYETQEVKIEPYQPHICKVCHLVFKSNKTLHMHQKRKHKVFRKSFKHICDYCGMSYETKNSLVAHIKRKHGPDATADDTDEHTCEICALVFKGAARLRMHMRRKHGAFEDAFKHVCSDCGLTYDKYRSLVVHIQRKHSGAKPVSNEWFSCPFCPKAFTKRETYVRHIQRKHKVSEEPTVKTENATPEFLEGCTNEQTGEITCKECPLMFTSLNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFESRELYINHTHIKLIKECSICGLIFATEGGLAKHLRCTHKIDTPKTVFCNICNEGFHEKRQLKPHLLKVHLKVSYTCKYCNKIFKAKESYRRHIIIKHPMQRIMSTNLQKCEKCPEMFKDEFELSRHVSLMHAVPDEKDPAWVEVKKEEVDSKDSFQCTKCSETYLTWQQLKLHYEQNHHVTEETQCQVCGNLVPITELQKHIKITHTDTVEMECKYCDFKTTSKLSLTQHTLRHKNATTLHCDFNGCRYKTFYEIAMDKHKRKHADLGVKFQCTKCPFQSMNKYILKYHEEAHTTGKKRYACDKCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341555;
- 90% Identity
- iTF_01010614;
- 80% Identity
- -