Spin021499.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387640.1:2046795-2049551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0096 0.79 10.9 8.1 1 23 147 170 147 170 0.96 2 17 4.7e-05 0.0038 18.2 2.4 1 23 179 202 179 202 0.97 3 17 0.0011 0.089 13.9 0.7 1 23 214 237 214 237 0.97 4 17 0.00037 0.03 15.4 1.0 1 23 246 269 246 269 0.97 5 17 2.1e-05 0.0018 19.3 1.4 1 23 280 303 280 303 0.97 6 17 6.1e-05 0.005 17.8 0.8 2 23 333 355 332 355 0.97 7 17 0.00015 0.012 16.6 1.5 2 23 365 387 364 387 0.96 8 17 0.00084 0.069 14.3 1.7 2 20 392 410 391 412 0.93 9 17 0.0063 0.52 11.5 0.4 2 21 417 436 416 439 0.94 10 17 0.15 12 7.2 1.4 3 23 449 470 448 470 0.95 11 17 1.8e-05 0.0015 19.5 1.9 1 23 475 498 475 498 0.97 12 17 0.00016 0.013 16.5 0.3 2 23 510 532 509 532 0.96 13 17 0.061 5 8.4 2.2 1 23 556 579 556 580 0.94 14 17 0.0072 0.59 11.3 1.8 3 23 615 635 613 635 0.97 15 17 1.9 1.6e+02 3.7 2.1 1 23 641 665 641 665 0.96 16 17 0.029 2.4 9.4 0.1 1 23 701 723 701 723 0.96 17 17 0.078 6.4 8.1 1.9 1 23 729 752 729 752 0.97
Sequence Information
- Coding Sequence
- ATGTCGATTAAAATTGAAGATATAAAGAAAGAAGATGACGAATTTCAAAGAAAGGATCCAACATCTTTCTTGCCAGAGGAGGAGATGTCATATGAGTTCAAAAAGAAAAAGAAAAAAAAGAAGAAACAACAAGAGGATCCTTTCAAGGACTTGGAGATGGAGACAAATCATTTTCCAGCCGTGCCAACGTTAGCATTAGATCCAGAAGTTAATATAAAAGTCGAAGACATCGAAGTGGAGTTAAATTTTAATGATTTTACCGATAACCAAGGCCTGTTATTAGAAGCACATCACAGTGAGGACAGTCAGCCGGAACCAGCCATCAAAGTGGAAGACCATACTCACGAGGCAGTGATACTTACGTTTGAGAATGTAGTCAGCGAAAAGAAATTGCTCAATTATGAACCTCCAGAGGTTAAATTAGAACCGTACAAGCCACACATCTGCAAAGTGTGCCATCTAGTGTTTAAATCCAACAAAACCCTTCACATGCACCAGAAAAGGAAGCACAAGGCATTCCGGAAGTCTTTCAAGCATGTATGTGATCATTGTGGAATGTCGTATGAAACAAAAAATAGTTTGGTGGCTCATATTAAACGGAAGCATGGTCCAGACGCCCCTGCAGACGATGCGGATGAGCATACGTGTGATATTTGCGCTCTGGTGTTCAAAGGTGCTGCTAGATTACGAATGCATATGCGCAGGAAGCATGGGGCGTTTGCAGACGCTTTCAAATATGTCTGCAGTGAGTGTGGATTAACATATGATAAGCATAGAAGCCTCGTTGTCCACATACAAAGGAAGCATTCTGGCATCCAGCCTGTGTCTAACGAGTGGTTCAGCTGCCCGTTTTGCCCTAAAGCATTTACTAAAAGGGAAACGTACGTACGTCATATACAAAGAAAACATAAAGTAAATGAAGAGCCGACAGTGAAGTCGGAAAACTTGACACCTGAGTTATTAGAGGGCTGTAAAAATGAGGAAACAGGAGAAATCACTTGCAAAGAATGTCCATTGATGTTCACATCAGTTAATTACTTGAAATTACACATGAGAAGAAAGCACAATGCTTTGAAAGAAGCGTTTCGACTTAAATGCAGAATATGCAATCTATCCTATGATAAATTAGAAAGCTTAAAGCGCCATATAAGGAGAAAACACGATAGAAAAGTTCAATGCAACATATGCAATAAACAATTTGAGTCAAGAGAACACTACACAAATCATACGCACATTAAATTAATCAAGGAGTGTTCGCTTTGTGGTCTAATTTTCGCCACTGAAGGCGGTCTTGCCAAGCATTTACGCTGCTCGCACAAAATAGATACTCCAAAGACGGTGTTCTGTAACATATGCAACGAAGGATTCCATGAGAAACGACAATTGAAGCCTCATTTACTAAAAGTACATCTAAAGGTGTCCTACACTTGTAAATATTGCAATAAGATATTCAAAGCTAAAGAGAGTTATCGACGTCATATAATCATAAAGCATCCGACACAGAGAATCATGAATACGCAGCTACAGAAATGCGAGAAATGTCCAGAGATGTTTAAAGACGAATTTGAACTCTCTCGCCATGTGAATATAATGCATACTGGCCCTGAGAATGCAGATGCTGGATGGCTCGAAGTCAAAAAGGAGGAGGTGGACTCTAAGGACTCCTTCCAATGCACAAAGTGCTCTGAGACTTATTTAACCTGGCCACAATTGAAATTGCATTATGAACAAAATCATCACATTGCAGAAGAAACTCAGTGTCAAGTCTGCGGAGAAATCATACCGGTGTTAGACCTTCAGAAACACATTAAAATCAAGCACACAGAAACAATTGAGATGGCGTGCAAGTACTGCGACTTCAAGACTACATCCAAGCTGAGTTTGACGCAGCACACTTTACGACACAAAAATGCAACTACTTATCGCTGTGATTTCAATGGTTGTAGGTATAAGACTTTTTACGAGGTGGCCATGGAGAAACATAAGAGGAAACACGCCGATTTAGGTGTTAAGTTTCAGTGCAGTCGATGCCCTTTTCAGAGTATGAATAAGTACATTTTAAAGTACCATGAAGAAGCGCACTCTACTGGTCGTAAGAGGTACGCATGCGATCAGTGTGATTACGCCACAATTCTGCCAGCAAACTTGGTGCAGCACAAATATAAGCATTCAGCAGAAAAAAGGTTCAAATGTGAGGTGTGTCCGTTCGCTACTAAATATAACACGTCGTTGCGTTTCCATGTAAGAAAAAAACACTGTGATCTCCCCATGAGTTGA
- Protein Sequence
- MSIKIEDIKKEDDEFQRKDPTSFLPEEEMSYEFKKKKKKKKKQQEDPFKDLEMETNHFPAVPTLALDPEVNIKVEDIEVELNFNDFTDNQGLLLEAHHSEDSQPEPAIKVEDHTHEAVILTFENVVSEKKLLNYEPPEVKLEPYKPHICKVCHLVFKSNKTLHMHQKRKHKAFRKSFKHVCDHCGMSYETKNSLVAHIKRKHGPDAPADDADEHTCDICALVFKGAARLRMHMRRKHGAFADAFKYVCSECGLTYDKHRSLVVHIQRKHSGIQPVSNEWFSCPFCPKAFTKRETYVRHIQRKHKVNEEPTVKSENLTPELLEGCKNEETGEITCKECPLMFTSVNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFESREHYTNHTHIKLIKECSLCGLIFATEGGLAKHLRCSHKIDTPKTVFCNICNEGFHEKRQLKPHLLKVHLKVSYTCKYCNKIFKAKESYRRHIIIKHPTQRIMNTQLQKCEKCPEMFKDEFELSRHVNIMHTGPENADAGWLEVKKEEVDSKDSFQCTKCSETYLTWPQLKLHYEQNHHIAEETQCQVCGEIIPVLDLQKHIKIKHTETIEMACKYCDFKTTSKLSLTQHTLRHKNATTYRCDFNGCRYKTFYEVAMEKHKRKHADLGVKFQCSRCPFQSMNKYILKYHEEAHSTGRKRYACDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341555;
- 90% Identity
- iTF_00859720;
- 80% Identity
- -