Tjap017244.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065950.1:1648513-1651744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0096 0.62 10.9 8.1 1 23 146 169 146 169 0.96 2 18 0.0087 0.56 11.1 3.1 1 23 178 201 178 201 0.93 3 18 0.0011 0.07 13.9 0.7 1 23 213 236 213 236 0.97 4 18 0.00037 0.024 15.4 1.0 1 23 245 268 245 268 0.97 5 18 2.1e-05 0.0014 19.3 1.4 1 23 279 302 279 302 0.97 6 18 2.4e-05 0.0015 19.1 1.0 2 23 332 354 331 354 0.97 7 18 0.00015 0.0094 16.6 1.5 2 23 364 386 363 386 0.96 8 18 0.00076 0.049 14.4 1.4 2 20 391 409 390 411 0.93 9 18 0.003 0.19 12.5 0.3 2 21 416 435 415 438 0.94 10 18 0.1 6.7 7.7 1.5 3 23 448 469 447 469 0.96 11 18 7.8e-06 0.0005 20.7 2.6 1 23 474 497 474 497 0.97 12 18 0.00016 0.01 16.5 0.3 2 23 509 531 508 531 0.96 13 18 0.0017 0.11 13.3 1.2 1 23 555 578 555 579 0.94 14 18 0.46 29 5.6 0.2 2 23 585 606 584 606 0.91 15 18 0.025 1.6 9.6 1.8 3 23 614 634 612 634 0.97 16 18 6.9 4.4e+02 1.9 0.8 1 23 671 693 671 693 0.81 17 18 0.029 1.9 9.4 0.1 1 23 700 722 700 722 0.96 18 18 0.079 5.1 8.1 1.9 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGTCGATTAAAATCGAAGATATAAAGAAGGAAGATGAAATCGCGAGGAGGGACCCCACATCTTTCCTGCCCGAAGAGGAGATGTCATATGAgttcaaaaagaaaaagaaaaaaaagaagaaaaagcaAGAGGACCCCTTCAAAGATTTAGAATTGGAGAGGCATCATTTTCCCGCTGTGCCAACGCTAGCATTAGACCCGGAGGTTACTATTAAAGTCGAAGATATTGAGGTGGAGCTGAATTTTAAtgatTTCGCCGACAACCAAGGCCTGCTAGTGGAGGCAGGCCACAGCGAGGACAGTCAGCCCGAACCGGCAATTAAAGTGGAAGACCAGAGCCACGAGGCAGTGATACTTACCTTCGAAAACGTCATCAACGAAAAGAAATTGCTCAATTACCCCGCCCCAGAAGTGAAACCCGAACCGTACCAGTCGCACATCTGCAAAGTGTGCCATCTAGTGTTTAAATCTAACAAAACTCTTCACATGCATCAGAAGCGCAAGCATAAAGTGTTTAGGAAGTCATTCAAGCACATATGTGAATGTTGTGGTATGTCATATGAGACTAAAAATAGTCTTGTAGCTCATATGAAGAGGAAACATGACCCTGATGCCCCGCCAGATGATTTGGACGAGCATACATGTGATATCTGTGCTCTAGTGTTTAAAGGTGCTGCCAGATTAAGGATGCATATGAGAAGAAAGCACGGGGCGTTTGCAGACTCCTTCAATTATGTGTGTAGTGAATGTGGATTGACATATGATAAACACAGGAGTCTTGTGGTTCACATACAAAGGAAGCATTCTGGAGTCCAACCAGCGTCTAACGAATGGTTTAGCTGTCCGTTCTGTCCCAAAGCGTTTACTAAGAGAGAGACATACGTACGACACATACAAAGAAAACATAAGGTTAGTGAAGATCCAACGGTGAAGACGGAGAACATGACTTCAGAAGTAATAGAAGGGTGCAGAAACGAGCAAACTGGAGAAATCACTTGCAAAGAATGCCCCCTGATGTTCACATCGTTGAATTACTTAAAATTGCACATGAGACGGAAGCACAATGCCCTCAAAGAGGCGTTTCGGCTCAAATGCAGAATATGCAACCTATCCTACGATAAATTAGAAAGCTTAAAGCGACATATAAGGAGAAAACATGATAGGAAAGTGCAATGCAACATATGCAACAAACAGTTCGAATCTAGAGATCATTACATGAACCACACGCACATACAATTAATCAAAGAGTGTTCTATATGCGGTCTAATTTTCGCCTCCGAAGGCGGTCTTGCCAAGCATTTACGGTGCACGCACAAAATAGACAGACCCAAGACTGTATTCTGTAACATTTGCAACGAAGGATTCCACGAGAAGCGGCAACTCAAACCTCACTTAATGAAAGTACACCTGAAGGTGTCCtatacttgtaaatattgtaataaaacgttcAAGGCTAAAGAGAGTTATCGAaggcatattattataaagcatCCATCACAGAGAGTGGTCCCTGCGCATTTACAAAAGTGTGAGAAATGCCCCGAGATGTTCAAAGACGAGTTTGAATTGTCCCGTCATGTTAATATTATGCATGCTGAGCCAGAGGAACCAAATCCTGTATGGCTCGAAGTCAAAAAGGAGGAGATTGACTCTAAAGACTCTTTCCAGTGCACAAAGTGCTCCGAGGCCTACATATCCTGGCCACAACTGAAACTTCACTACGAGCAAAACCACCATGTTATTGAGGAATCCCAATGCCAAATGTGCGGTGAGATCATACCCATCACCGAGTTACAAAAgcacataaaaacaaaacacacagaGACAGTCGAAATGGCATGTAAATACTGCGAATTTAAAACTACCTCCAAATTGAGTCTAACACAACACACTCTGAGGCATAAAAATGCAACTACCCTCCGTTGTGACTTCAACGGATGTAGATACAAGACTTTCTATGAGCTGGCAATGGAGAAGCATAAAAGAAAACACGCTGATTTAGGCGTAAAGTTCCAGTGCACACAATGCCCGTTTCAAAGTATGAATAAGTACATTTTGAAGTATCACGAAGAAGCGCACGCGACCGGTCGTAAAAGGTACGCTTGCGATCAATGCGACTACGCCACGATACTTCCAGCCAATTTGGTGCAGCATAAATATAAACACTCCTCAGAGAAAAGATTTAAATGTGAAGTTTGCCCGTTCGCTACTAAGTATAATACATCTTTGCGTTTTCATGTTAGAAAAAAACACTGTGATCTCCCCACAAGttga
- Protein Sequence
- MSIKIEDIKKEDEIARRDPTSFLPEEEMSYEFKKKKKKKKKKQEDPFKDLELERHHFPAVPTLALDPEVTIKVEDIEVELNFNDFADNQGLLVEAGHSEDSQPEPAIKVEDQSHEAVILTFENVINEKKLLNYPAPEVKPEPYQSHICKVCHLVFKSNKTLHMHQKRKHKVFRKSFKHICECCGMSYETKNSLVAHMKRKHDPDAPPDDLDEHTCDICALVFKGAARLRMHMRRKHGAFADSFNYVCSECGLTYDKHRSLVVHIQRKHSGVQPASNEWFSCPFCPKAFTKRETYVRHIQRKHKVSEDPTVKTENMTSEVIEGCRNEQTGEITCKECPLMFTSLNYLKLHMRRKHNALKEAFRLKCRICNLSYDKLESLKRHIRRKHDRKVQCNICNKQFESRDHYMNHTHIQLIKECSICGLIFASEGGLAKHLRCTHKIDRPKTVFCNICNEGFHEKRQLKPHLMKVHLKVSYTCKYCNKTFKAKESYRRHIIIKHPSQRVVPAHLQKCEKCPEMFKDEFELSRHVNIMHAEPEEPNPVWLEVKKEEIDSKDSFQCTKCSEAYISWPQLKLHYEQNHHVIEESQCQMCGEIIPITELQKHIKTKHTETVEMACKYCEFKTTSKLSLTQHTLRHKNATTLRCDFNGCRYKTFYELAMEKHKRKHADLGVKFQCTQCPFQSMNKYILKYHEEAHATGRKRYACDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341555;
- 90% Identity
- iTF_00429256;
- 80% Identity
- -