Curb018407.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- bab2
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000149.1:1770741-1772351[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-16 1.4e-13 51.5 0.0 2 43 67 109 66 111 0.95
Sequence Information
- Coding Sequence
- ATGCGAATTAATTTTCCTTTCCAGGCTAAACTGATCGAAGGAGCACATCCATGGATGAGCGGGGCAGCATCCTCTTCCGTTGCTGACAGCTACCAATACCAACTGCAATCAATGTGGCAGAAATGCTGGAATACCAACCAACAAAGTCTAGTGCAGCAGCTGCGCTTTCGTGAACGAGGACCCCTCAAGTCTTGGCGGCCAGAATCTATGGCCGAGGCCATATTTAGCGTGTTAAAAGAGGGCCTGTCCCTGTCACAGGCGGCACGAAAGTTCGATATTCCCTACCCGACCTTCGTTCTGTATGCTAATCGGGTTCACAATATGTTGGGGCCCTCGTTAGATGGTGGGTCCGATCCCCGACCGAAAGCCAGAGGTCGTCCTCAGAGGATTCTCCTGGGAATGTGGCCGGAGGAGTTGATTCGTTCGGTCATAAAGGCGGTGGTATTTCGGGACTATCGCGAAATAAAAGAGGAAACCGTCCAAATGTACGCAAACGGCGGTGGAGGTGGTGCAGCTGCAGTTGCTCATTCGTCCCAGTATGGCATGCCGGGAACCCCATCGAACGGCTCTTCATCCAACGGCTACCACAATAAAATCGGCCATCCCAGTGGAACCCTGCCAGCAGATTCCGCCAGCCCTTTGTCAACTATGGCCGAGACTCTGCGCCGTCAAATCCAAATGTCACAACAGTCCCCGTCGCCGTCGTTGAACATGTACAAGTCGCCGGCCTTCCTGCAGCGCTCTGAAATGGAAGATCCGATTTCGAAAAGAAGTTCTGCCGACCTCCATCTGTCTGCGGCAAAGATGCCGGACAATTTGCCCGACCTGAGCGCACTGGGTATCATGGGAATCCCCGGTCTTAATGTCATTCCGCAAGGTCGCAGCCAGCATCCAATTtcccaacagcaacaacaacagcatctCCAGCCAAACTCTTCGTTCTCGAGTCGCGACCTGAAGGAAAGCATGCAACAACACATGTCAAATGCAATGTCACAGGCGGCTGCAGCCGCTGCATCCAGACCCCAGCTTCCATATGCACAGCAACGAAGTGGCAGTCAGAGCAGTAGCGGTAGCAGTTCCCACCAAAAGCCCAACAGCAGCTCTCCCTTCTCCATGAATTACAAGACAAAAGCCGAGCCATCATCGTATAAATTCCCCGACAAGCGAATGCTCGAGGGTCTAACCCCCGGCATCGACTTCGAGGCGATCGCCAACGGTCTTCTGCAGAAATCGCACAAAGCATCGCCCCGCTTCGAAGACTTCTTCCCCGGCCCCGACGTCAGCGACCTATTTGCGGCGAATTCTTCCTCCGAAGCGGCAGCTGGCTACCCCATGAAAGATCACCCCATCGCGAAGATCAAGTTGGAACATCAGCACCACAGCACAGACACCCACGAGGAATAG
- Protein Sequence
- MRINFPFQAKLIEGAHPWMSGAASSSVADSYQYQLQSMWQKCWNTNQQSLVQQLRFRERGPLKSWRPESMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGSDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEETVQMYANGGGGGAAAVAHSSQYGMPGTPSNGSSSNGYHNKIGHPSGTLPADSASPLSTMAETLRRQIQMSQQSPSPSLNMYKSPAFLQRSEMEDPISKRSSADLHLSAAKMPDNLPDLSALGIMGIPGLNVIPQGRSQHPISQQQQQQHLQPNSSFSSRDLKESMQQHMSNAMSQAAAAAASRPQLPYAQQRSGSQSSSGSSSHQKPNSSSPFSMNYKTKAEPSSYKFPDKRMLEGLTPGIDFEAIANGLLQKSHKASPRFEDFFPGPDVSDLFAANSSSEAAAGYPMKDHPIAKIKLEHQHHSTDTHEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395778; iTF_00315075; iTF_00312513; iTF_00311733; iTF_00315864; iTF_00313374; iTF_00389540; iTF_00974562; iTF_00241377; iTF_00427048; iTF_01253448; iTF_01223308; iTF_01318156; iTF_01396413; iTF_00664768; iTF_01522471; iTF_01520883; iTF_00672780; iTF_00976379; iTF_00991677; iTF_01044640;
- 90% Identity
- iTF_00389540;
- 80% Identity
- -