Cran009042.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- bab2
- Assembly
- GCA_951813785.1
- Location
- OX638382.1:66217795-66219329[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-17 6.9e-14 51.6 0.0 2 43 48 90 47 92 0.95 2 2 8.4 9e+03 -3.2 1.0 16 23 309 316 306 319 0.55
Sequence Information
- Coding Sequence
- ATGAGTGGAGCATCCTCATCTGTTGCTGATAGCTACCAATATCAACTGCAGTCAATGTGGCAGAAATGTTGGAATACCAATCAACAAAGTTTGGTACAGCAGCTGCGGTTTCGTGAACGCGGACCTCTCAAGTCTTGGCGACCGGAATCAATGGCCGAAGCAATATTTAGTGTTCTAAAAGAAGGCTTATCACTGTCACAGGCTGCAAGAAAATTCGATATCCCATACCCGACCTTTGTTCTGTATGCCAATCGAGTTCATAATATGTTGGGGCCTTCGCTAGACGGTGGTTCCGATCCACGACCAAAGGCTAGGGGTCGTCCACAGAGAATTCTCTTGGGTATGTGGCCAGAAGAATTGATTCGATCTGTCATAAAGGCGGTGGTGTTCCGGGATTACCGTGAAATTAAGGAGGAAACTGTGCAAATGTACGCGaatggaggtggaggtggtgcAGCTGCAGTAGCACATTCGTCTCAATATGGAAATCCATCAAATGGCTCCTCATCCAATGGTTATCACAATAAAATGGGGATTCCCAGCGGAACCCTGCCAGCAGATTCCTCCAGCCCGTTGTCAACTATGGCAGAAACACTCCGTCGTCAAATTCAAATGTCACAACAATCTCCGTCGCCATCGTTAAATATGTACAAGTCGCCCGCTTTCTTGCAACGATCTGAAATGGAAGATCCGATGTCGAAGAGAAGCTCTGCTGATCTCCATCTATCTACAGGAAAAATGGCGGATAATTTGCCGGATCTAAGTGCGCTTGGTCTCATGGGAATCCCTGGTTTGAATGTGATTCCTCAAGGTCGTAGCCAGCAGCCGATTtcccatcaacaacaacaaccgtcGCATATGCAGCCAAACGCTTCATTCTCAAGTCGAGATTTGAAAGACAGCATGCAGCAGCACATGTCTAATGCAATGTCACAAGCTGCCGCAGCAGTAGCGTCAAGACCCCACCTCCCATATGGACAGCAACGAAGTGGTAGCCAGGTCGGCAGCAGCAGTTCACACCAGAAACCCACCAGCAGCTCTTCTTTTTCCATGAACTACAAGACAAAAGCTGACCCCTCACCTTATAAATTCCCAGACAAGAGAATGCTTGAGGGTCTAACCCCCGGCATAGATTTCGAAGCAATCGCCAATGGTCTCCTGCAGAAATCCCATAAAGCTTCGCCCCGCTTTGAGGACTTCTTCCCCAACCCAGATGTGAGTGATTTATTTGCGGCGAATTCGGCATCCGAAGCTACAGCTGGTTACCCCATGAAGGATCATCCGATAGCAAAGATCAAGTTGGAGCATCAGCACCACAGCACCGACACCCACGAGGAATAA
- Protein Sequence
- MSGASSSVADSYQYQLQSMWQKCWNTNQQSLVQQLRFRERGPLKSWRPESMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGSDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEETVQMYANGGGGGAAAVAHSSQYGNPSNGSSSNGYHNKMGIPSGTLPADSSSPLSTMAETLRRQIQMSQQSPSPSLNMYKSPAFLQRSEMEDPMSKRSSADLHLSTGKMADNLPDLSALGLMGIPGLNVIPQGRSQQPISHQQQQPSHMQPNASFSSRDLKDSMQQHMSNAMSQAAAAVASRPHLPYGQQRSGSQVGSSSSHQKPTSSSSFSMNYKTKADPSPYKFPDKRMLEGLTPGIDFEAIANGLLQKSHKASPRFEDFFPNPDVSDLFAANSASEATAGYPMKDHPIAKIKLEHQHHSTDTHEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314190;
- 90% Identity
- iTF_01223308; iTF_00241377; iTF_00315075; iTF_00312513; iTF_00311733; iTF_00315864; iTF_00313374; iTF_01253448; iTF_01044640; iTF_00314190;
- 80% Identity
- -