Svit023530.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- bab2
- Assembly
- GCA_958431115.1
- Location
- OY288110.1:841409-847808[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-17 4.7e-14 52.9 0.0 2 43 86 128 85 130 0.95
Sequence Information
- Coding Sequence
- ATGCTACATTCCAAAGTAAAATACTTTACTGTGCAGCAACGTCAGTATTGTGATGGCAGGTGGCAGGCTGGCGACTTGGTGgctAAGCTGATTGAAGGAGCACATCCGTGGATGAGTGGAGCCGGATCCTCGTCAGTTGCTGACAGCTATCAATATCAATTGCAATCCATGTGGCAGAAATGCTGGAACACCAACCAACAAAGCCTAGTTCAACAGTTGCGTTTTCGTGAGCGTGGGCCTTTGAAATCTTGGCGACCCGAATCAATGGCTGAGGCGATTTTTAGTGTTTTAAAAGAAGGTCTGTCGCTGTCCCAAGCAGCCCGTAAATATGACATCCCCTATCCGACGTTTGTTTTGTATGCGAATCGAGTTCATAATATGCTGGGACCATCGCTAGATGGTGGTACGGATCCCCGACCCAAAGCCCGAGGACGTCCACAGAGAATTCTTTTGGGAATGTGGCCGGAAGAGTTGATTCGATCCGTTATAAAGGCAGTAGTTTTTCGTGATTATCGTGAAATCAAAGAAGAAACTGTACAAATGTATGCAAATGGCGGAGGAGGTGGTGCAGCTGCAACAGCTCATTCGTATGGAATGCCAGGAACTCCTTCAAACGGCTCTTCTAACGGTTATCACAACAAACTGGGATCACATCCTTCAGATTCGGCTAGCCCTCTATCAACCATGGCAGAAACCCTCCGTCGTCAGATTCAAATGTCCCAACAATCGCCGTCACCGTCACTCAATATGTATAAGTCCCCAGCCTTCCTGCAAAGATCGGAAATGGAAGATCCAATGTCTAAGAGGAGTTCCTCCGAACATCATTTAGCAAACGCTAAAATGGCTGACAATTTACCCGATCTCAGCGCGCTCGGTCTCATGGGAATTCCTGGCCTCAATGTCATTCCTCAAGGTCGTAGTCAGCATCAGCTGccccatcaacaacaacagcaacatcacCAACAAAATTCCTCCTACTCAAGTCGAGAACTGAAAGAGAGCATGCAGCAACACATGTCAAATGCAATGTCACAAGCAGCCGCCGTTGCAGCAGCATCAAGACCGCAGCTTCCCTATGGCCAACAACGAAGTGGCAGCTCTAACAGCAGCAGTAGTTCCCAACAGAAGCCGACAAGTAATTCGCCCTTCTCCCTCAACTACAAGTCAAAAGGTGACCCCTCGCCCTACAAGTTTCCCGATAAGCGAATGCTAGAGGGTCTAACACCCGGCATAGATTTCGAAGCCATTGCAAATGGTTTGCTGCAAAAATCGCACAAGGCCTCACCCCGTTTCGAAGACTTCTTTCCCGGCCCTGATGTGAGTGAATTGTTCGCGGCGAATTCAGCCTCCGAGGCGGCAGCTGGTTTTCCCATCAAAGATCATCCGATAGCGAAGATTAAGCTGGAACAACAGCACCACAGTTCCGACAACCATGAGGAATAA
- Protein Sequence
- MLHSKVKYFTVQQRQYCDGRWQAGDLVAKLIEGAHPWMSGAGSSSVADSYQYQLQSMWQKCWNTNQQSLVQQLRFRERGPLKSWRPESMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEETVQMYANGGGGGAAATAHSYGMPGTPSNGSSNGYHNKLGSHPSDSASPLSTMAETLRRQIQMSQQSPSPSLNMYKSPAFLQRSEMEDPMSKRSSSEHHLANAKMADNLPDLSALGLMGIPGLNVIPQGRSQHQLPHQQQQQHHQQNSSYSSRELKESMQQHMSNAMSQAAAVAAASRPQLPYGQQRSGSSNSSSSSQQKPTSNSPFSLNYKSKGDPSPYKFPDKRMLEGLTPGIDFEAIANGLLQKSHKASPRFEDFFPGPDVSELFAANSASEAAAGFPIKDHPIAKIKLEQQHHSSDNHEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314190;
- 90% Identity
- iTF_00664768;
- 80% Identity
- -