Csor021448.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- -
- Assembly
- GCA_948107745.1
- Location
- OX443563.1:101185755-101188962[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00017 0.02 16.0 1.1 2 23 394 415 393 415 0.97 2 16 2e-05 0.0024 18.9 1.0 1 23 421 443 421 443 0.98 3 16 8.9e-05 0.01 16.9 0.2 1 23 449 472 449 472 0.98 4 16 3.7e-05 0.0044 18.1 3.5 1 23 487 509 487 509 0.98 5 16 5.5e-05 0.0065 17.5 0.2 1 23 542 564 542 564 0.97 6 16 7.9e-05 0.0093 17.0 1.8 1 23 570 592 570 592 0.98 7 16 2.5e-05 0.0029 18.6 1.0 2 23 703 724 702 724 0.97 8 16 5e-06 0.00058 20.8 3.1 1 23 730 752 730 752 0.98 9 16 1.2e-05 0.0014 19.6 0.2 1 23 758 781 758 781 0.98 10 16 0.00019 0.022 15.8 1.2 1 23 792 814 792 814 0.98 11 16 7.3e-06 0.00086 20.3 1.4 1 23 826 848 826 848 0.98 12 16 0.018 2.1 9.6 2.0 1 23 854 876 854 876 0.97 13 16 0.00013 0.015 16.4 0.6 2 23 882 904 881 904 0.95 14 16 0.11 13 7.1 0.2 1 23 912 935 912 935 0.95 15 16 0.0007 0.082 14.1 0.5 3 23 945 966 944 966 0.93 16 16 0.0028 0.33 12.2 0.8 2 23 972 993 971 993 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTCAAGTTGGACGACACAGTGTGCCGCGTATGTTTAAGTTCCTCTGGCAACATACCAATCTTCGATGGATGCGGCAAAGATGATCAATTTCGATACTGCACTTCTTTGGAGGCGAACGTAGACGATGGACTTCCGTCTAAGCTCTGCAAGAAGTGCAACGATCATTTGAAGGTTGCCTATGATTTTCGATTTCAGGCAATTTATGCCGAAAAATATTTCAGAAAGACCATATTTTTGCCTTCGTTCAAAAAAGAAGATAATGGAGGAGCTGCAGAGATCTCGGATGTGCGCAATTGTACAGATGAGTTGGATGAGAATATGGCGGAGATTGATATGTTGCTAGCAATACACACTGAAACCGTTGACGAGGATGATGGGGACAATGACGATATGAATAACTCTGGGTTCTACGATGATGACGATAGTGTCGATGAGAATAGAAAGCATGTTGAAGTCATTGGTATGGAGACATTTGAGAAAGAGCAGCGTGAGCAAAAGGACCAGAAAGTTAAAATTGAAATAGCTGCTGTCCCTCCACCACTCGTCTCATCAACGGTATGTACTACAGAATATGTGCAACCAATTCCTGCAATAGGCATACCCACGGAATCCCcacaaccaacaacaacaagcaaTAATACGGCGCCTAATGCAGACATAAATGCCTTACAACAGTATACGACGTCAAGTCCTTTTTCCACGCAATCAGTGCAAGATGTCCAGATCGAACATGAAACTGAAACATCCCTCCAATTAGAGATTATCCCAATCATGAAGAATGATCCATCCACGTATGACTTTAGTACTACTGCTACAGTAAACAACGTCTACAATGCATACAATGAACCGACCCACATTCAGTACCAACAGCCTATGGCTATGCACCTGCAATACGAGCAACCTGCTGTGTCATTGCCCATGCAGGAATCTGTTCCTGTGTCGGACAACTATGAATTCGCATATCAATCACAGTTTCCTACGTACACCGCCCAAACAATCGAAATTAGACCTGAGGATCAGACAATCACATCAATTCAGCAGGAGCAGTCAGATCAGATGGTCGCAATTGTTAGAACTGAAATTCAACCCGATACCACCACAAAGACTGAAAATCTACTAAACCCCAAACCTAAAAAGGGCAAGCGTGAAGGACCCGGTCGCAGGGACAAGATTGAGTGCAACATCTGTGGAAGCATCTTTACACACTTAAACTCGCTAAAGACCCATCTCCTTAAGCACTCCGGCGAGAAACCTTTCCGATGTGAGTTCTGCGATAAGGCGTTTGCCAGAAAGACTGTCCTCAATATCCACCGCCGTCTGCACACCGGAGAAAAGCCCTACCAGTGCCCACTTTGCTCGAGTGCGTATGTGACTAAGGAAGCCCTAACCCGCCATCTTCAAAAAGATCACGAACAGGAAGTGGGTGCCAATTTCCGCAAGGACAAGGTCTCCTACATCTGCTCCATATGCAATAAGTCGCGCTGTTCTAAATACTCGCTGGCGTCGCACATGAAGACACACTCGAGCGATGCTAAGGCCCGACGCAAAATAGTTCGACGAAAGAAGGAGAAGTCCGAGGGCACCAGTGGTACCACAGCTAACAGCGCACCCTTAAAGTACTCGTGCAAAATCTGCCAGAAAGGTTTCCCCAAcaaatgggaacttagtacacacgCTGAGTCGCATGACATGCACAAGACGTTCGAGTGTGACGTCTGTCAGCGAACATTCGAAAAAAAGTTCCAGTTACTGTACCACCTGCAGACGCACGATGGTGGTGATGAATTGGTGAAGGCAAAGGTGCAACCATCGATTGAAAAACGAAAAATTTCGAGCGAAGTAACGGAGCAGGCAGAACAAAATGAACCgccaactgaaaaaaaaccaaaaaggaaACTCTCAGCGAGAAAGCGGCGGAAAAGAAAAGCGAAAAATGCGAATGTTGCCTGCGACGAGGCAGATGAACCACTTGAAGAGGAAGAAAATGACGATAAAAATGATAAGGACTTTGAGCTGGCAAAAGCTGATAAGGACACAAAGAAGAGGACAAATCGCGCACAGCGCGAAAACCTCAAAGCACTACGCGCGGGTAGTAAAATTGAATGTCACATATGCGAGGCTATATTTACGCATCCCACATCGCTGAAAACGCACATGCTGGTGCATTCAGGTGAGCGCCCATTCAAGTGCGACCACTGTGATAAGTCGTTTGCAAGGAAAACTGTTCTCAATATTCACCGAAGGCTGCACACTGGAGAAAAGCCCTACAAGTGTCCTCTCTGCGATAGTGCTTACGTCACCAAGGATGCTCTAATGCGACACATGTCAAAAGACCACGATGATGACAGGGAAGCCGATCGAATTAAATTCACCTGCGGCATCTGTCACAAGGCGATGGGCACCAAGTACTCTCTGCAAGCCCATATGAAACTGCACGAGCAGAACTCAACGACAGAAACGGAAGTTAAGTTCTCGTGCAATACTTGCACTGAATCTTTCGACAGCAAGTCCGACTACACCAAGCACATGGAAGTTCATGATTCTAACCGCAATTTCCAATGTGACATCTGCCAGGTCACATTCGAGAAGAAATTTAAGCTTCTCTTTCATTTGCAGACGCACAAGATCGAGGACCTGCCCTGCAAAAAGTGCAAAGAAACGTTTACAATAAGAGAGAACCTCATTCAACACATCAAGTTGCAGCATATGGGTCCTCGAAATATGGACTTTCAATGTCCACAGTGCAATATTGGACAGTACGACACCCGTGATCTGAAACTGCACATGTTGAATGCCCACGATGTGAGTATGGGCTCCCTCAACGCCTGCGATTTGTGTGGAGAGAGCTATTCCACTGCAGCCCAATACTATAAGCACATGCACGACAAACATGACACAATCAGCAAAACATGCAACGAATGTGAGAAGTACTTTGACTCGAGAAAGGCCTTTGATAAACACATACTGGCACACTACATGTAA
- Protein Sequence
- MSVKLDDTVCRVCLSSSGNIPIFDGCGKDDQFRYCTSLEANVDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEDNGGAAEISDVRNCTDELDENMAEIDMLLAIHTETVDEDDGDNDDMNNSGFYDDDDSVDENRKHVEVIGMETFEKEQREQKDQKVKIEIAAVPPPLVSSTVCTTEYVQPIPAIGIPTESPQPTTTSNNTAPNADINALQQYTTSSPFSTQSVQDVQIEHETETSLQLEIIPIMKNDPSTYDFSTTATVNNVYNAYNEPTHIQYQQPMAMHLQYEQPAVSLPMQESVPVSDNYEFAYQSQFPTYTAQTIEIRPEDQTITSIQQEQSDQMVAIVRTEIQPDTTTKTENLLNPKPKKGKREGPGRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFRCEFCDKAFARKTVLNIHRRLHTGEKPYQCPLCSSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSSDAKARRKIVRRKKEKSEGTSGTTANSAPLKYSCKICQKGFPNKWELSTHAESHDMHKTFECDVCQRTFEKKFQLLYHLQTHDGGDELVKAKVQPSIEKRKISSEVTEQAEQNEPPTEKKPKRKLSARKRRKRKAKNANVACDEADEPLEEEENDDKNDKDFELAKADKDTKKRTNRAQRENLKALRAGSKIECHICEAIFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSAYVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQNSTTETEVKFSCNTCTESFDSKSDYTKHMEVHDSNRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKKCKETFTIRENLIQHIKLQHMGPRNMDFQCPQCNIGQYDTRDLKLHMLNAHDVSMGSLNACDLCGESYSTAAQYYKHMHDKHDTISKTCNECEKYFDSRKAFDKHILAHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312848; iTF_00312010; iTF_00316190; iTF_00315370; iTF_00314558; iTF_00314557; iTF_00311232;
- 90% Identity
- iTF_00312848;
- 80% Identity
- -