Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000550.1:6456-9681[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00018 0.03 16.0 1.1 2 23 393 414 392 414 0.97

2 16 2.1e-05 0.0035 18.9 1.0 1 23 420 442 420 442 0.98

3 16 6.1 1e+03 1.7 0.2 1 12 448 459 448 462 0.84

4 16 3.9e-05 0.0066 18.1 3.5 1 23 479 501 479 501 0.98

5 16 5.8e-05 0.0097 17.6 0.2 1 23 534 556 534 556 0.97

6 16 8.3e-05 0.014 17.1 1.8 1 23 562 584 562 584 0.98

7 16 9e-06 0.0015 20.1 1.0 2 23 695 716 694 716 0.97

8 16 5.2e-06 0.00087 20.8 3.1 1 23 722 744 722 744 0.98

9 16 0.0031 0.52 12.1 0.6 1 23 750 773 750 773 0.97

10 16 0.0002 0.034 15.9 1.2 1 23 784 806 784 806 0.98

11 16 7.7e-06 0.0013 20.3 1.4 1 23 818 840 818 840 0.98

12 16 0.019 3.2 9.7 2.0 1 23 846 868 846 868 0.97

13 16 0.00013 0.022 16.4 0.6 2 23 874 896 873 896 0.95

14 16 0.12 20 7.1 0.2 1 23 904 927 904 927 0.95

15 16 0.00074 0.12 14.1 0.5 3 23 937 958 936 958 0.93

16 16 0.0029 0.49 12.2 0.8 2 23 964 985 963 985 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00018	0.03	16.0	1.1	2	23	393	414	392	414	0.97
2	16	2.1e-05	0.0035	18.9	1.0	1	23	420	442	420	442	0.98
3	16	6.1	1e+03	1.7	0.2	1	12	448	459	448	462	0.84
4	16	3.9e-05	0.0066	18.1	3.5	1	23	479	501	479	501	0.98
5	16	5.8e-05	0.0097	17.6	0.2	1	23	534	556	534	556	0.97
6	16	8.3e-05	0.014	17.1	1.8	1	23	562	584	562	584	0.98
7	16	9e-06	0.0015	20.1	1.0	2	23	695	716	694	716	0.97
8	16	5.2e-06	0.00087	20.8	3.1	1	23	722	744	722	744	0.98
9	16	0.0031	0.52	12.1	0.6	1	23	750	773	750	773	0.97
10	16	0.0002	0.034	15.9	1.2	1	23	784	806	784	806	0.98
11	16	7.7e-06	0.0013	20.3	1.4	1	23	818	840	818	840	0.98
12	16	0.019	3.2	9.7	2.0	1	23	846	868	846	868	0.97
13	16	0.00013	0.022	16.4	0.6	2	23	874	896	873	896	0.95
14	16	0.12	20	7.1	0.2	1	23	904	927	904	927	0.95
15	16	0.00074	0.12	14.1	0.5	3	23	937	958	936	958	0.93
16	16	0.0029	0.49	12.2	0.8	2	23	964	985	963	985	0.96

Sequence Information

Coding Sequence: ATGTCTGTCAAGTTGGACGACACAGTGTGCCGCGTATGTTTAAGTTCCTTTGGCAACATACTAATCTTCGATGGATGCGGCAAAGATGATCAGTTTCGATACTGCACTTCTTTAGAGGCGAACGTGGACGATGGACTGCCGTCTAAGCTCTGCAAGAAGTGCAACGATCATTTGAAGGTTGCCTATGACTTCCGATTTCAGGCAATTTATGCCGAGAAATATTTCAGAAAGACAATATTTttgccttctttcaaaaaagaaGATACTGAAGGGACTGCAGACATCTCGGACGTGCGTAACTGTACCGATGAATTGGATGAGAATATGGCTGAGATTGATATGTTGTTAGCAATACACACCGAAACCGTCGATGAGGGCGACGAAGACAATGACGATATGAATAATTCTGGGTTCTACGATGATGACGAGAGTGTCGACGAGAGCAGAAAGCACGTTGAAATCATTGGCATGGATACTTTTGAGAAGGAGCAGCGAGGACAGAAGGATCAGaaagtaaaaattgaaatagcTGCTGTCCCTCCACCGCTTGTTTCATCAACAGTGTGTACAATGGAATATGCGCCGCCGAAACCTGTAACAGGCCTACCCGCGGAATCACCGCAACCTGCAACAACAAGCAACAATACGATGCCTAATGTAGACATAAATGCCTTACAACAGTATACAACTTCAAGTTCTTATTCTACACAATCAGCGCAAGATGTGCAGATCGATCATGGAACCGAAACATCCCTCCAATTAGAGATTATCCCACTCATGAAGAATGATCCGTCGACGTATGACTTTAGTACTGCTGCTACAGTTACCGACGCCTATGATGCATATAATGCTACGGCGCACATTCAGTACCAACAGCCTATGTCCATGCACCTGCAATACGAGCAACCAACTGTGACATTGCCCATACAGGAATCTGTTTCTGTTCCAGACAACTATGAGTTCCCGTATCAACCACAGTTCTCTACATTCACCGCCCAAACACTCGAAATCAGACCTGCGAATCAGACAATTTCTCCAGCTCATCAGGAGCAACCAAATCAGATCGTTCCAATTGTAAGAACTGAAACCGAACCCGAGACCACCACAAAGACTGAAAATCTGAATCCCAAACCCAAAAAGGCTAAGCGTGAAGGTCCCAGTCGCAGGGACAAGATCGAGTGCAACATCTGTGGAAGCATCTTCACGCATTTGAACTCGCTGAAGACGCATCTCCTTAAGCACTCTGGTGAAAAACCCTTCCGCTGTGAGTTTTGCGATAAGGCCTTTGCAAGAAAGACTGTCCTCAATATCCACCGACGTCTTCACACTGGAGAGAAACCCTATCAGTGTCCGCTTTGCTCCAGCGCCTATCGCCATCTTCAAAAAGATCACGAACAGGAAGTGGGTGCCAATTTCCGCAAGGACAAGGTCGCCTACATCTGCTCCATATGCAACAAGTCGCGTTGCTCGAAATACTCTCTAGCGTCGCACATGAAGACACACTCGAGCGATGCAAAGGCCAGACGCAAGATAGTTcgacgaaaaaaagaaaaatccgaCGGCAGCAATGGCACCGCAGCTAACAGCGCCCCACTCAAGTACTCGTGTAAGATCTGCCAAAAAGGTTTCCCCAACAAATGGGAACTTAGTACTCATGCCGAGTCTCATGACATGCACAAGACCTTCGAGTGCGACGTCTGTCAGCGAACATTCGAAAAGAAGTTTCAGTTGCTGTACCATCTGCAGACGCACGATGGTGGCGATGAACTTGTAAAAGCGAAGGTGCAACCAGCGATTGAAAAGCGAGAAACTGTTGATAAAGTAACGGAGAAGTCGGTGCAAAAGCAACTGCCAACTGGAAAAAAACCGAAAAGAAAACTCTCGGCTAGGAAGCGGCATAAAAGGAAAgcgaaaaatgcaaatattgcCAGCGACGAGGTCGAGGAACCGCTGGAGGAAGCAGAAAATGACGATGACGAGGACAAGGACTTCGAGCTTGTGAAAGCAGACAAGGACACCAAGAAGAGGACAAATCGGGCACAGCGCGAGAACCTCAAAGCACTACGCGCGGGTAGTAAAATTGAATGTCACATATGCGAGGCTGTATTTACGCATCCGACATCGCTGAAAACGCACATGTTAGTGCATTCAGGTGAGCGCCCCTTTAAATGCGACCATTGCGATAAGTCATTTGCAAGGAAAACTGTTCTCAACATTCACCGAAGGCTGCACACTGGAGAGAAGCCCTACAAGTGTCCGCTCTGTGATAGTGCCCACGTCACCAAGGATGCTCTAATGCGCCACATGTCGAAGGACCACGACGATGACAGGGAAGCCGATCGAATTAAGTTTACCTGTGGCATCTGCCATAAGGCGATGGGCACCAAGTACTCCCTGCAAGCCCATATGAAACTGCACGAGCAGAACTCAACGGCGGAAACAGAAGTTAAGTTCTCGTGTAATACATGCACTGAATCCTTTGACAGCAAGTCTGACTACACCAAACACATGGAAGTGCATGACTCAAATCGCAATTTCCAATGTGACATCTGCCAGGTCACATTCGAAAAGAAATTCAAGCTGCTCTTCCATTTGCAGACACACAAGATCGAGGACCTGCCCTGCAAAAAGTGCAAGGAAACATTTACAATAAGAGAGAACCTCATTCAACACATAAAGTTGCAGCATATGGGCCCTCGGAATATGGACTTTCAGTGTCCGCAGTGCAATATCGGGCAGTACGACACCCGCGATCTGAAACTGCACATGTTGAATGCACACGACGTGAGTATGGGCCCCCTAAACGCCTGCGATCTGTGCGGGGAGAGCTATTCCACTGCAGCCCAATACTATAAGCACATGCACGACAAACATGACACAATCAGCAAAACATGCAACGAATGTGAGAAGTACTTCGATTCGAGGAAGGCCTTCGATAAGCACATACTGGCCCACTACATGTAA
Protein Sequence: MSVKLDDTVCRVCLSSFGNILIFDGCGKDDQFRYCTSLEANVDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEDTEGTADISDVRNCTDELDENMAEIDMLLAIHTETVDEGDEDNDDMNNSGFYDDDESVDESRKHVEIIGMDTFEKEQRGQKDQKVKIEIAAVPPPLVSSTVCTMEYAPPKPVTGLPAESPQPATTSNNTMPNVDINALQQYTTSSSYSTQSAQDVQIDHGTETSLQLEIIPLMKNDPSTYDFSTAATVTDAYDAYNATAHIQYQQPMSMHLQYEQPTVTLPIQESVSVPDNYEFPYQPQFSTFTAQTLEIRPANQTISPAHQEQPNQIVPIVRTETEPETTTKTENLNPKPKKAKREGPSRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFRCEFCDKAFARKTVLNIHRRLHTGEKPYQCPLCSSAYRHLQKDHEQEVGANFRKDKVAYICSICNKSRCSKYSLASHMKTHSSDAKARRKIVRRKKEKSDGSNGTAANSAPLKYSCKICQKGFPNKWELSTHAESHDMHKTFECDVCQRTFEKKFQLLYHLQTHDGGDELVKAKVQPAIEKRETVDKVTEKSVQKQLPTGKKPKRKLSARKRHKRKAKNANIASDEVEEPLEEAENDDDEDKDFELVKADKDTKKRTNRAQRENLKALRAGSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSAHVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQNSTAETEVKFSCNTCTESFDSKSDYTKHMEVHDSNRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKKCKETFTIRENLIQHIKLQHMGPRNMDFQCPQCNIGQYDTRDLKLHMLNAHDVSMGPLNACDLCGESYSTAAQYYKHMHDKHDTISKTCNECEKYFDSRKAFDKHILAHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00313679;
90% Identity: iTF_00315370;
80% Identity: iTF_00314558;