Cfun000009.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01001141.1:14597-19275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0011 0.095 13.3 0.9 1 23 353 375 353 375 0.97 2 18 0.07 5.9 7.7 1.5 2 23 420 441 420 441 0.95 3 18 0.0056 0.47 11.1 0.8 2 23 507 528 507 528 0.97 4 18 7e-07 5.9e-05 23.4 1.7 1 23 572 594 572 594 0.98 5 18 6.3e-06 0.00053 20.4 3.0 1 23 601 623 601 623 0.95 6 18 0.00084 0.071 13.7 0.6 1 21 630 650 630 654 0.92 7 18 0.014 1.2 9.9 2.4 3 23 734 754 732 754 0.95 8 18 9.2e-05 0.0077 16.7 6.0 1 23 800 822 800 822 0.97 9 18 0.00028 0.024 15.2 0.7 1 20 827 846 827 848 0.94 10 18 0.049 4.1 8.2 0.3 2 23 859 880 859 880 0.97 11 18 1.3e-05 0.0011 19.4 0.7 2 23 918 939 917 939 0.97 12 18 1.5e-05 0.0013 19.2 1.4 1 23 944 966 944 966 0.95 13 18 2.5e-05 0.0021 18.5 1.6 1 23 972 994 972 994 0.98 14 18 4.6e-06 0.00039 20.8 0.4 1 23 1012 1034 1012 1034 0.95 15 18 3.7e-07 3.1e-05 24.2 0.6 1 23 1040 1062 1040 1062 0.99 16 18 4e-05 0.0034 17.8 0.2 1 23 1068 1090 1068 1090 0.97 17 18 0.0024 0.2 12.2 7.3 1 23 1096 1118 1096 1118 0.96 18 18 0.011 0.89 10.2 0.4 1 20 1124 1143 1124 1145 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAGGTAAATACGTCGGAGGCACATCAGCAGCCGGACGACGTAGACATGCCGGCCCAGCTCGAGATCTGCCGTGTCTGCCTCCTCGGTAACCACTTGATGCGTGGACTCTTTCACCAGGATGTCGTACCGAATCTCTCCGAGAAGGCCATGAGCTTCGCCAACGTTAAGATCATGCCCGGAGATGGACTGCCTACGCACATTTGCTACAATTGCGTGGACAAGCTTGAGTCAGCCTACAAATTTAAGATGCAGGTTGAGCAGGCGGACAGCATGTTGCGAGAAAGATTGGATTCACTGAATATGAAGGAGGAACTCTTTTTTACCGATGTTGATGTGAACTTGTCATCACACAGAAATGACGTAGAAGAGATAACGGAAGAAAGTTTGCTTCTCAAGGATCACATGGACTTGCtaaatgttcaaaaaataACCGAACCAGACGATGTCTCTCAGAGCCAAGATGTCAAAGATGAAGACATTGAAAATCACAATAATGAAGAGCACGGACAGCTACTTGAAAATGAACAACAGATGCAGATTCAGAGTGATGAAGAAATACATGAGATTCACAATGAACAGCAGATTGAGAGTCAAGTAAGTGAAGCTATTCAGCACGTGTCGGAGGAGCATCACAATCAATCATTTGAAACACAGGAACTTCAAGAGATGATGTTCAAAGAAATTAGTCATCAGGAAGAAATGCAAGAAGCATTGAACCACACTCAGCAACTGACAATGCATGAACACAATTATGTAGCAGAAGCACAGTCATGTCAAGTTCCCGACAAGGATGAATCAATCATGCAgGAATATGAACTAGACAGAAAGGAAAATACAGAAAATGATATAACGAATGAAAGTATTCAAATTCATTATGTGTCAGAAGAGTCATCTCCAATAGAAGCAACTCGAAGAAGTAAACGAAAgataaatcaaagaaaaatacaagtcGATAGAGATTCAGATGAAGACAACTACTTTGAGAACTTAAATTTAAGTTCTAGATTGAAAAAGGTTCAGTCTGAAAAGTTAGACAAGTGTTACTTTGTGTGTTATCTGTGTGACAGACAATTTATGTCAAAGGATGTTTTGAAGGAGCATATGTATTCTCATGACGAGGTAAAAAGAACTCTGTCCATATTGAAAAAGCAGACGGAAAAACAGCTAAAGACAccagaaaagcaaaaaaatgaagtcGCAAGCCCGACTTTGTCGAAATCACCGTCTAGCGGTAAACAACCAAATACCTGTCCTCATTGTGGAAAGGAATATCTTTATGTCATTTCATTTAATAAGCATTTGAAGCAgcacgagagggaaaaaatgaaGGACATGAAGGAAGAGCCTATGCCACTAGAAGTTTCCTTTCAGGAAGATGATGAATTTTTGGATTTCGAGGATTATGAAGATAATGGTGGGATTGGTTcggaaaatgaagaagaaactGCTCTTGAACAAGAAGAGGaagttttgataaaaacagTACCAATGAAGAATGGTTTGGCCAAGTGTAACGTTTGTGAGGAAGAGTTTGACACAATGAATGAGCTTAAAAATCACCGTTCGCAACACGTTGCTGAAGGAGTTCTCACTGAACAGGATCTACAGGGTGGTACTAAAATAGTTGAAGTATTAGATGCGAGCAACGATTTAGGCGAGAAGGAAGAACAAAATATTTCCAAGGTTCAagaatataaatgttttaactGCCCAGACTGTCCAGCTACTTTCAGTCATAAAAAATCTCTGACTCGTCACATAAACAGCCATAGTCATGGTATCAAGAAATACACTTGTAAGCTCTGCCAACAGAGCTTTACACGTAAGGATCATCTACGTCGTCATGCCGAAGCGCACGGGAATCGATTAAAGAGTTTCAGGTGCAGCCAGTGTAACAAGAGTTTCGGTAACGAGCTGACGTTGAGAAATCATCTAATAGCGACGAATCATAAAACGATAATGCATGGGCAAGAATATGATCCGAACAAGAGAATTAGAAGGGTGGCTGCTGAGGCTGCGCAGAAGATTATCGACCAGATAAAGACTGATCTGAATTCGGACGAATTTGAAGAGGAGAAGGATGAGAATACTGATGATGTTAAAGAAGAATTGGATCCTCCTGCAGAGGAAGAGGCGGAAAGCACATTATCAGTAAAGAAACAGCAGCGAAATGCGAAAGCTCTGTTCTGTGCTACTTGCAATCAGAAGTGCATATCGAAACAAGCTCTCACAAAACATATGGAACAGCACGTTAAAAACGAAAGTACAGTAAACCATGAGAAGGTCAACAAGCCAGAGGAATCTCGTGAAAACGATGTTAACGATGAAGAAAATGAGGAGGATGACGACAACTTTGAAGGCGGTCTCGACTGGCCGATGGACACTCATGAATGTCCGACCTGTAAGAAGTGCTACAGTACCAAGAAGTCTCTTCTGCGGCATCAACTGTTGCACGAGGAGCCAAACTTTGAGTGTGACATCTGCAATGTCAAGTTCTATAGAAAGGATAAGCTTAAAGCACATTATGATAAGTGCTCGGAGAAGAATCCAGATCAGGTGCGAAAGTGTAACATCTGCGGggatacttttgaaaataatgagaTTTTGAAGGAACACAGAGCAAAACACGTGATGGAAGGAATACTGACGGAAGAGGATCTGCGGGAAATCGAACCGGGGCTAGACGATAGGAATGCAGAGAAGACAACGCGCAAAAGAAGAACGGACATTGTTGGACTCGAGTGCACTGAATGTAATAAAAGATATACCTCTAGAAAAGGATTGCTCAGACACATACAGGTACACGAGGGTAAAAAGTATCTGTGCGACATATGTCCCAAGAAATTTTATAGGCAAGAGCATTTGAAGATTCACGTCGCGAAACACAACATGGTCAAACCATACAAATGTCCGCGATGCACCAAACGCTTCATCAAGGAAGAACAGCTGAACAATCATATAACGAAGCACGACAAATCATTGAATAAAAAGACGAAAACAGATTCCGATACCTCCAAGAGATTCTTGTGCGAAATCTGTTCGAAGAGTTTTACACAATCCACGACTCTAATAGCGCACTTGCGTGCTCACAACGGTATCAAACCTTATGTCTGTGAGGTCTGCTCTAGGCCGTTTACGACGAATGCGTATCTTAAGATGCATATGAGAACGCACACGCAAGAGAGGCCCTACATCTGCCAGTACTGCTCGAGAGCGTTCGCGCGAGCTGACACTTTAGCCAACCATTTGACTTCGCATACGGGCGAGGCCAAGTATCACTGCAAGTACTGTTCGAAACACTTCAGACGATTAAAATCATTGAAGGAGCATGTATTCATTCATACTGGTCAGCGTCCGTATGCCTGCCCCACTTGCGATAGGCGGTTTAACAACAACGGTAGCAGGTACGCGCACAGTAAGCGCTGCAAGCAAAACGTCATGCAAATGGGTAACGCGGAGATTACTGTGCATAATATCAACGCTGAACAGCAAGAAATGCAAGAAATGCAAGAGATACAGACTATTCAAGAGCTGCAAGAACATCAAGTCGAACAGGATGAGCAAGAACAGCACTTGCAGTTACAACAAGAACAACATGAGCAGTTAAAGCAGAGTCAACTACAGCCCCAGAGGATACATCAGGCCACAATTAGTCAAGCGCAGATCATCAAGGGTCAGAATATCAAGACTATCACTATAACGAGGCCAGATGGCGGATTAACTCAGCAGCATGTGCTGGGACAGGAGATTCTTATGCCGCTGATATTGCCGCTTACGGTGACGCTTACCGATGTAGGCGAGGAGGTGATTTTACCAGAGGgtactaaaatttttacaacgtAA
- Protein Sequence
- MDAVEVNTSEAHQQPDDVDMPAQLEICRVCLLGNHLMRGLFHQDVVPNLSEKAMSFANVKIMPGDGLPTHICYNCVDKLESAYKFKMQVEQADSMLRERLDSLNMKEELFFTDVDVNLSSHRNDVEEITEESLLLKDHMDLLNVQKITEPDDVSQSQDVKDEDIENHNNEEHGQLLENEQQMQIQSDEEIHEIHNEQQIESQVSEAIQHVSEEHHNQSFETQELQEMMFKEISHQEEMQEALNHTQQLTMHEHNYVAEAQSCQVPDKDESIMQEYELDRKENTENDITNESIQIHYVSEESSPIEATRRSKRKINQRKIQVDRDSDEDNYFENLNLSSRLKKVQSEKLDKCYFVCYLCDRQFMSKDVLKEHMYSHDEVKRTLSILKKQTEKQLKTPEKQKNEVASPTLSKSPSSGKQPNTCPHCGKEYLYVISFNKHLKQHEREKMKDMKEEPMPLEVSFQEDDEFLDFEDYEDNGGIGSENEEETALEQEEEVLIKTVPMKNGLAKCNVCEEEFDTMNELKNHRSQHVAEGVLTEQDLQGGTKIVEVLDASNDLGEKEEQNISKVQEYKCFNCPDCPATFSHKKSLTRHINSHSHGIKKYTCKLCQQSFTRKDHLRRHAEAHGNRLKSFRCSQCNKSFGNELTLRNHLIATNHKTIMHGQEYDPNKRIRRVAAEAAQKIIDQIKTDLNSDEFEEEKDENTDDVKEELDPPAEEEAESTLSVKKQQRNAKALFCATCNQKCISKQALTKHMEQHVKNESTVNHEKVNKPEESRENDVNDEENEEDDDNFEGGLDWPMDTHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVMEGILTEEDLREIEPGLDDRNAEKTTRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRQEHLKIHVAKHNMVKPYKCPRCTKRFIKEEQLNNHITKHDKSLNKKTKTDSDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCSKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVMQMGNAEITVHNINAEQQEMQEMQEIQTIQELQEHQVEQDEQEQHLQLQQEQHEQLKQSQLQPQRIHQATISQAQIIKGQNIKTITITRPDGGLTQQHVLGQEILMPLILPLTVTLTDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037252; iTF_01036457; iTF_01487237; iTF_01035656; iTF_00287479; iTF_01190654;
- 90% Identity
- -
- 80% Identity
- -