Ptri001097.1
Basic Information
- Insect
- Philotrypesis tridentata
- Gene Symbol
- -
- Assembly
- GCA_018906965.1
- Location
- JACCIB010000037.1:1340555-1345217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00022 0.034 15.6 1.6 1 23 341 363 341 363 0.97 2 18 0.015 2.3 9.9 0.6 2 23 408 429 408 429 0.96 3 18 0.0021 0.33 12.5 0.2 2 23 491 512 490 512 0.96 4 18 0.00012 0.018 16.5 0.6 2 23 556 577 555 577 0.96 5 18 2.6e-05 0.0041 18.5 4.7 1 23 581 603 581 603 0.94 6 18 0.00075 0.12 13.9 0.7 1 21 610 630 610 634 0.92 7 18 0.066 10 7.8 3.5 2 23 713 734 712 734 0.94 8 18 9.5e-05 0.015 16.7 6.0 1 23 778 800 778 800 0.97 9 18 0.00029 0.046 15.2 0.7 1 20 805 824 805 826 0.94 10 18 0.046 7.3 8.3 0.6 2 23 837 858 837 858 0.97 11 18 1.3e-05 0.0021 19.4 0.7 2 23 896 917 895 917 0.97 12 18 2.7e-05 0.0042 18.5 1.6 1 23 922 944 922 944 0.95 13 18 2.5e-05 0.004 18.5 1.6 1 23 950 972 950 972 0.98 14 18 4.7e-06 0.00075 20.8 0.4 1 23 990 1012 990 1012 0.95 15 18 3.9e-07 6.1e-05 24.3 0.6 1 23 1018 1040 1018 1040 0.99 16 18 4.2e-05 0.0066 17.9 0.2 1 23 1046 1068 1046 1068 0.97 17 18 0.0025 0.4 12.3 7.3 1 23 1074 1096 1074 1096 0.96 18 18 0.011 1.7 10.3 0.4 1 20 1102 1121 1102 1123 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCATCGAGGTAAATACGTTGGAGGCGCAGCAGCCGGAAGACGTAAACATGCCGGCCCAGCTCGAGATTTGCCGTGTCTGCCTCCTGGGTAATCATCTGATGCGCCAACTCTTTCACCAGGACGACATGCCGAGCCTATCCGAGAAGGCGATGAGCTTTGCCAACGTTAAGATTATGCCTGAAGATGGACTGCCCTCACATATCTGCTACAATTGTGCAGACAAGCTTGAATCAGCGTACAAATTTAAGCTACAAGTTGAGCAGGCTGATGGGGTATTGCGAGAAAAATTGGACTCACTGAATATAAAAGAAGAGTTATTTTTTAGTGACGTAAACTTGTCATCCCATAGAAACGATGTAGCAGGTATTACAGAAGAAAGTTTGCTCCTAAAGGACCATATGGACTTATTGAATGTTCAAAAAATAACTGAGGAAGAAGATGTTTCTCAAAATCAAGATATGAACAATGTAGAAATGGAAAAACCCTGTACTGAAGAGCAAAAGTTGCTTAAAGACGAGCCACAAATGCAGATAGAAAGTGATGAAGAAGTACAAAAGATTCACCATGAACAGCAGATTCAACAATTGACAGATGAACATCATAATCAATCATTTGGAACACATGAATTTCAAGATATGATGTTTAAAGAGATTAATACACAAGAAGAAATACAAGAAGCATTAAAACATTCTCAGCAATTGGCAATGCATGAACACAATTATGTAGCAGAAGTGCAGTCATGCGAAGTTCCTGACAATGATAAATCAATTGCAGAGGAAAATGAATTAGACAATAAAGAAAACACAAATGATAAAGAAGTAAATGACGATATTCAAATTCATGATTTGCCAGAAGAGTCTATTCCAATGGAAACAACTCGAAGAAGTAAACGTAAGATAAATCAAAGAAGAGCACAAGTGGATAAAGATTCATATGATGATAACTACTTTGAAAACTTGAATTTAAGCTCTAGACTGAAAAAGGTTCAGTCTGAAAAATTAGATAAGGTTTATTTTATGTGTTATTTATGCGACAAACAATTTATGTCAAAAGAGCTTTTGAAAGAGCATATGTATTCTCATGATGAGGTAAGAAGAACTCTTTCCGTTTTAAATACAACAACAGAAAAATTGCTAAAGACCCCAGAAAAACAAAAAAATGAAACTGCAAGCCCAACTTCATCCAAAACAATATCTAGTGGAAAGCAACCAAATACTTGTCCTTATTGTGGAAAGGAATATCTATATCTAATTTCATTTAATAAGCATTTAAAGCAACACGAGAGAGAAAAAATGAAAGAGATGAAAGAAGAGATGCCTTTAGAAGTTTCCTTTGAAGAAGATAATGAATCATTAGATTTCCATAACTATGAAGATAATATAATTGATTCAGAAGAAGAAGCCTCTACCAAACAAGAAGAAACTGTTTTGATAAAAGAAGAATCAGAAAAAAGTTGTTTGATAAAGTGTAATGTTTGTGAAGAAGAGTTTGATTCAATGGATGGATTAAAAAATCACCAATCTCAACATGTTGAAGGCATACTTGCTAGACAGGACCTACGGAATGATACTAAAAAAGTGGAAGTATTAGATGCTGACAATGGATTGAATGAAAATGAAGAGCAAAATGACTCCAAAGTTATAGAAAATAAAGACTTAACTTGCCCTCACTGTTTAGCCGTATTCTCTAATAGAAAATCTCTGCTTCGACATATAGACATCCATAATGCCAAATACTCGTGCAAACTCTGTAATCAAAGCTTTACGCGTAAAGATCATCTTCGTCGTCATAATGAACAACATGGCAATAGGTTAAAAAGTTTCAGGTGCACCCAGTGTAACAAGAGTTTTGGAAATGAGCTAACACTGAGAAATCATCTTATAGCAACGAATCACAAAACGATAATACATGGACAAGAGTATGATCCAAATAAAAGAATTAAAAGAGTAGCAGCTAAAGCTGCACAGAAAATTATAGATCAGATAAAAACTGATTTGAATTCGGATGAATTTGAAGAGGAGAAGAATGAGAATTCTGAAAACATTAAAGAGGAACAAGAAGCTCCTGTACAGGAAGAGACAGAAAAAACATTAGCAACAAAGAAATCACAGCGTAACACCAAAACACTATGTTGTGCTACTTGTAATCAAAAGTGCATTTCTAAACAAGCTCTTGCGAAACATATGGAACAGCACGATGAAAGTACAACAAAACAAGAAAAGGTTAAGAAACCAGAAGAACCTCTTGAAAATGATGATAATGATGAAGATAACGAGGAGGATGATGACGACTTCGAAGGCGGTCTCGATTGGCCCATGGATACTCATGAGTGTCCTACTTGTAAAAAGTGTTATAGTACTAAGAAGTCTCTTCTCCGACATCAATTGTTGCACGAAGAGCCGAACTTTGAGTGTGATATTTGTAATGTTAAATTCTATAGGAAGGATAAGCTCAAGGCGCATTACGATAAGTGCTCAGAGAAAAATCCGGATCAGGTGCGAAAATGTAATATATGCGGAGATACTTTTGAAAATAACGAAATTTTGAAAGAACACAGATCCAAACACGTTATGGAAGGTATATTGACGGAAGAGGATTTGCGGGAAATTGAACCGAGGCCAGAGGACAGGAATGCCGAGAAAACAACTCGAAAAAGAAGAACAGATATTGTTGGACTGGAATGCACTGAATGTAATAAACGATATACTTCTAGAAAAGGATTACTCAGACATATACAGGTTCACGAAGGTAAAAAGTATCTGTGCGACATTTGTCCTAAGAAATTTTATAGGCGAGAGCATTTGAAGATCCACGTTGCGAAACATAACATGGTGAAGCCGTACAAGTGTCCTAGATGTACCAAACGCTTTATAAAAGAAGAGCAGCTGAATAACCATATAACAAAACATGATAAGACATTGAACAAAAAAACGAAAACCGATTCTGATACCTCCAAAAGATTTTTGTGCGAAATTTGTTCGAAGAGTTTCACACAATCTACGACGTTAATAGCACACTTGAGAGCTCATAACGGTATCAAACCTTATGTATGTGAGGTTTGTTCGCGGCCGTTTACAACAAATGCATATCTTAAGATGCATATGAGAACACATACTCAAGAGAGACCCTATATCTGTCAATATTGTTCACGAGCATTCGCACGAGCCGATACCTTAGCTAACCACTTGACATCACACACGGGCGAAGCAAAGTATCATTGCAAATATTGCTCAAAGCATTTTAGGCGGTTGAAATCGTTAAAAGAGCATGTATTTATTCATACAGGTCAGCGCCCTTATGCCTGTCCCACTTGTGACAGAAGATTTAACAATAACGGCAGCAGATATGCACATAGTAAACGCTGCAAGCAGAACGCTTTGCAGGTCGGTAACCCGGAGATGGCGGTACATAACATCAACATCGAACCCCAAGAAATGCAAGAAATCCAAGAAATGCAAGATATACAAGAAATGCAAGCCATTCAGGAATTGCAAGAACATCAAGTTGACCAGGATGAACAAGGACATCAATTGCAACTTCAACAAGATCAAGTTGAACAGTTGCAACAGAGTCAACTACAACCTCAGAGGTTACATCAAGCAACTATTAGTCAGGCACAAATTATTAAAGGTCAGAATATCAAGACTATTACTATAACGAGGCCAGATGGAGCTTTAACTCAACAGCATGTGCTGGGACAGGAAATTCTCATGCCGTTGATATTGCCGCTTACGGTGACTCTGACTGATGTAGGTGAGGAAGTGATCTTACCAGAAGGTACTAAAATTTTTACCACGTAA
- Protein Sequence
- MDAIEVNTLEAQQPEDVNMPAQLEICRVCLLGNHLMRQLFHQDDMPSLSEKAMSFANVKIMPEDGLPSHICYNCADKLESAYKFKLQVEQADGVLREKLDSLNIKEELFFSDVNLSSHRNDVAGITEESLLLKDHMDLLNVQKITEEEDVSQNQDMNNVEMEKPCTEEQKLLKDEPQMQIESDEEVQKIHHEQQIQQLTDEHHNQSFGTHEFQDMMFKEINTQEEIQEALKHSQQLAMHEHNYVAEVQSCEVPDNDKSIAEENELDNKENTNDKEVNDDIQIHDLPEESIPMETTRRSKRKINQRRAQVDKDSYDDNYFENLNLSSRLKKVQSEKLDKVYFMCYLCDKQFMSKELLKEHMYSHDEVRRTLSVLNTTTEKLLKTPEKQKNETASPTSSKTISSGKQPNTCPYCGKEYLYLISFNKHLKQHEREKMKEMKEEMPLEVSFEEDNESLDFHNYEDNIIDSEEEASTKQEETVLIKEESEKSCLIKCNVCEEEFDSMDGLKNHQSQHVEGILARQDLRNDTKKVEVLDADNGLNENEEQNDSKVIENKDLTCPHCLAVFSNRKSLLRHIDIHNAKYSCKLCNQSFTRKDHLRRHNEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTIIHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLNSDEFEEEKNENSENIKEEQEAPVQEETEKTLATKKSQRNTKTLCCATCNQKCISKQALAKHMEQHDESTTKQEKVKKPEEPLENDDNDEDNEEDDDDFEGGLDWPMDTHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRSKHVMEGILTEEDLREIEPRPEDRNAEKTTRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEEQLNNHITKHDKTLNKKTKTDSDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCSKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALQVGNPEMAVHNINIEPQEMQEIQEMQDIQEMQAIQELQEHQVDQDEQGHQLQLQQDQVEQLQQSQLQPQRLHQATISQAQIIKGQNIKTITITRPDGALTQQHVLGQEILMPLILPLTVTLTDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286642;
- 90% Identity
- -
- 80% Identity
- -