Csem017999.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- -
- Assembly
- GCA_900474235.1
- Location
- UCQR01086118.1:1825-6537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00075 0.075 14.0 1.4 1 23 353 375 353 375 0.97 2 18 0.079 8 7.7 1.5 2 23 421 442 421 442 0.95 3 18 0.0064 0.64 11.1 0.8 2 23 508 529 508 529 0.97 4 18 7.8e-05 0.0079 17.1 0.6 3 23 575 595 575 595 0.98 5 18 1.4e-05 0.0014 19.5 4.9 1 23 600 622 600 622 0.95 6 18 0.0019 0.19 12.8 0.7 1 21 629 649 629 653 0.92 7 18 0.0041 0.41 11.7 1.8 3 23 733 753 731 753 0.95 8 18 0.0001 0.011 16.7 6.0 1 23 799 821 799 821 0.97 9 18 0.00032 0.032 15.2 0.7 1 20 826 845 826 847 0.94 10 18 0.055 5.6 8.2 0.3 2 23 858 879 858 879 0.97 11 18 1.5e-05 0.0015 19.4 0.7 2 23 917 938 916 938 0.97 12 18 3e-05 0.003 18.5 1.6 1 23 943 965 943 965 0.95 13 18 2.8e-05 0.0028 18.5 1.6 1 23 971 993 971 993 0.98 14 18 5.2e-06 0.00053 20.8 0.4 1 23 1011 1033 1011 1033 0.95 15 18 4.3e-07 4.3e-05 24.3 0.6 1 23 1039 1061 1039 1061 0.99 16 18 4.6e-05 0.0046 17.8 0.2 1 23 1067 1089 1067 1089 0.97 17 18 0.0028 0.28 12.3 7.3 1 23 1095 1117 1095 1117 0.96 18 18 0.012 1.2 10.2 0.4 1 20 1123 1142 1123 1144 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAGGTAAATAAGTCGGAGACGGATCAGCCGGACGACGTAGACATGCCGGCCCAGCTCGAGATCTGCCGCGTCTGCCTCCTCGGCAACCACTTGATGCGTGGACTCTTTCACCAGGACGCCCTACCAAATCTATCCGAGAAGGCTATGAGCTTCGCCAACGTTAAGATCATGCCCGGAGATGGACTGCCTACACACATTTGCTACGATTGTACAGACAAGCTCGAGTCAGCCTACAAATTTAAGCTACAGGTTGAGCAGGCTGATAGCGTGTTGCGAGAAAAATTGGATTCACTCAATATGAAGGAGGAACTCTTTTTCGGTGATGTAGATGTGAACTTGTCATCCCACAGAAATGATGTAGAAGAGATAACGGAAGAAAGTTTGCTTCTCAAAGATCACATGGACTTGCTAAATGTTCAAAAAATAACCGAACAAGAGGATGTCTCTCAGAGTCAAGCTGTAAAAGAGGAAGACATTGAAAATCACAATAATGAAGAGCATCAACAGTTACTTGAAAATGAGCAACATATGCAGATTCAAAACGATGAAGAAATACAGAAGATTCACAATGAACAGCAGATTCAGAGCCAAGTAAGTGAAGCTATACAGCATGTGTCGGAAGAGCATCACAATCAATCGTTTGAAACACAGGAATTTCAAGAGATGATAATGTTCAAAGAGATAAGTCATCAGGAAGAAATGCAAGAAGCATTGAACCATGCTCAGCAACTGACAATGCATGaacataattatgtagcagaAGCACAATCATGTGAAGTTCCTGACAAGGATGACTCAACCATGGAGGAAATCCAATTAGACAGTGAGGAAAATACAGAAAATGATGTAACGAATGAAAGCATTCAAATTCATGATGTGCCAGAAGAGTTTTCTCCAGTAGAAGTAACTCGAAGAAGTAAACGTAAgataaatcaaagaaaaatacaagtcGATAGAGATTCAGATGAAGAAAACTACTTTGAAAACCTAAATCTAAGTTCTAGATTGAAAAAGGTTCAGTCTGAAAAGTTAGACAAGATTTACTTCATGTGTTATCTATGTGACAGACAATTTATGTCAAAGAATGCTTTGAAGGAGCATATGTATTCTCATGACGAGGTAAAAAGAACTCTTGTGTCTATATTGAAAAAGCAGACGGACAAATCGCCAAAGATAccagaaaagcaaaaaaatgaaactacaAGCCCTACTTCGTCAAAACCACCGTCTAGCGGTAAGCAACCAAACACCTGTCCTCATTGTGGAAAGGAATATCTTTACGTCATTTCGTTCAATAAGCATTTGAAGCAGCacgagagggaaaaaatgaAGGAGATGAAGGAAGATCCTATGCCATTAGAAGTTTCTTTTAAGGAAGATGATGAATCTTTGGATTTCGATGGCTATGCAGACAATGGTGCGATTGGTTCAGAAAGTGAAGAAGATACTGCTGTTAAACGAGAAGAGGAAGATTTGATGAAAACAGAACCAATAAAGAACGGTTTGGCCAAGTGTAACGTTTGTGAGGAAGAGTTTGACACAATGAATGAGCTTAAAAATCACCGTTCGCAACACGTCGTTGAAGGAGTTCTCACTGAACAAGATCTACAGGATAGTActaaaaaagttgaagaatTAGATATGAGCAACAATTTATATGAGAATGAAGAGCAAAATGATTCCAAGGTTGAACAATACAAGCATTTAGGCTGCCCGCATTGTCCAGCTATTTTCACTCAGAAAAAATCTCTGGCTCGTCATATAGACAGCCATAGGAGCAATAAGTATACCTGTAAGCTCTGTCATCAGAGCTTTACGCGTAAGGATCATCTACGTCGTCATGCCGAAGCGCATGGCAACAGATTGAAGGGTTACAAGTGCAGCCAGTGTAACAAGAATTTTGGTAACGAGCTAACGTTGAGAAATCATCTAATAGCAACAAATCACAAGACAATAATGCATGGACAGGAATACGATCCGAATAAGAGAATTAAAAGGGTGGCGGCTAAGGCTGCGCAGAAGATTATTGACCAGATAAAGACTGATCTGAATTCGGATGAATTCGAAGAGGATAAGGATGAAAGTACTGATGATGTTAAAGAAGAATTGGATCCTGCTGCAGAGGAAGAGATGGAAAACACATTATCAGTAAGGAAACTGCAGCGAAACGCGAGAGCTTTGTTCTGTGCTATTTGCAATCAGAAGTGCATATCGAAACAAGCTCTCACAAAACATATGGAGCAGCACGTTAAGAACGATAGTACAGTAAAACAGGACAAGGTCAACAAGCCGGTGGAATCTCGTGAAAACGATGTTAACGATGAAGAAAATGAGGAGGATGACGACGATTTCGAAGGCGGTCTCGACTGGCCGATGGACACTCACGAATGTCCTACCTGTAAGAAGTGCTACAGTACCAAGAAGTCGCTTCTTCGGCATCAGCTGCTGCACGAGGAGCCGAACTTTGAGTGTGACATTTGCAATGTCAAATTCTATAGAAAGGATAAGCTTAAAGCGCATTATGATAAGTGCTCGGAAAAGAATCCAGATCAGGTACGAAAGTGTAACATCTGCGGGgatacttttgaaaataatgagatTTTGAAGGAGCACAGAGCAAAACACGTAATGGAAGGAATACTGACGGAAGAGGATCTGCGGGAAATCGAACCGGGACCAGACGATAGGAATGTAGAGAAGACGACGCGGAAAAGAAGAACAGACATAGTTGGACTTGAGTGCACTGAATGTAATAAACGATACACCTCCAGAAAAGGATTGCTCAGACACATACagGTACACGAAGGTAAAAAATATCTATGCGACATCTGTCCCAAGAAATTCTATAGGCGAGAGCATTTGAAGATTCACGTCGCGAAACACAACATGGTCAAACCGTACAAATGTCCGCGATGCACCAAACGCTTCATCAAGGAAGAGCAGCTGAATAACCATATAACAAAGCACGACAAATCATTGAACAAAAAGAGCAAAACAGATTCTGATACCTCCAAGAGATTTTTGTGCGAAATCTGTTCGAAGAGTTTTACGCAATCCACGACTTTAATAGCACACTTGCGAGCCCACAACGGTATCAAACCTTACGTCTGTGAAGTCTGCTCTCGGCCGTTTACGACGAACGCGTATCTTAAGATGCACATGAGAACGCATACGCAAGAGAGACCTTACATCTGTCAGTACTGCTCGAGAGCTTTCGCGCGAGCTGACACTTTAGCCAACCATTTGACGTCGCACACGGGTGAGGCCAAGTATCACTGCAAGTACTGTTCAAAGCACTTCAGGCGATTGAAATCATTGAAGGAGCACGTATTCATTCATACCGGTCAGCGTCCGTATGCCTGTCCCACTTGCGACAGGCGGTTTAACAACAACGGCAGCAGGTACGCGCACAGTAAGCGCTGCAAGCAAAACGTCATGCAGGGGGGTAACACGGAGATTGCTGTGCATAACATCAACGTCGAACCGCAAGAAATGCAAGAGATGCACACTATTCAAGAGTTGCAGGAACATCAAGTCGAGCAGGATGAGCAAGAGCAGCAGTTACAGCTGCAACAAGAACAACATGAGCAGTTGCAGCAGAGTCAACTACAGCCCCAGAGGATACATCAGGCCACTATTAGTCAGGCGCAGATCATTAAGGGCCAGAATATCAAGACTATCACTATAACGAGGCCAGATGGCGGATTAACTCAGCAACACGTGTTGGGACAGGAGATTTTGATGCCGTTGATATTGCCGCTTACGGTGACGCTTACCGATGTAGGTGAGGAGGTGATCCTACCAGAGGgtactaaaatttttacaacgtAA
- Protein Sequence
- MDAVEVNKSETDQPDDVDMPAQLEICRVCLLGNHLMRGLFHQDALPNLSEKAMSFANVKIMPGDGLPTHICYDCTDKLESAYKFKLQVEQADSVLREKLDSLNMKEELFFGDVDVNLSSHRNDVEEITEESLLLKDHMDLLNVQKITEQEDVSQSQAVKEEDIENHNNEEHQQLLENEQHMQIQNDEEIQKIHNEQQIQSQVSEAIQHVSEEHHNQSFETQEFQEMIMFKEISHQEEMQEALNHAQQLTMHEHNYVAEAQSCEVPDKDDSTMEEIQLDSEENTENDVTNESIQIHDVPEEFSPVEVTRRSKRKINQRKIQVDRDSDEENYFENLNLSSRLKKVQSEKLDKIYFMCYLCDRQFMSKNALKEHMYSHDEVKRTLVSILKKQTDKSPKIPEKQKNETTSPTSSKPPSSGKQPNTCPHCGKEYLYVISFNKHLKQHEREKMKEMKEDPMPLEVSFKEDDESLDFDGYADNGAIGSESEEDTAVKREEEDLMKTEPIKNGLAKCNVCEEEFDTMNELKNHRSQHVVEGVLTEQDLQDSTKKVEELDMSNNLYENEEQNDSKVEQYKHLGCPHCPAIFTQKKSLARHIDSHRSNKYTCKLCHQSFTRKDHLRRHAEAHGNRLKGYKCSQCNKNFGNELTLRNHLIATNHKTIMHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLNSDEFEEDKDESTDDVKEELDPAAEEEMENTLSVRKLQRNARALFCAICNQKCISKQALTKHMEQHVKNDSTVKQDKVNKPVESRENDVNDEENEEDDDDFEGGLDWPMDTHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILKEHRAKHVMEGILTEEDLREIEPGPDDRNVEKTTRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCPRCTKRFIKEEQLNNHITKHDKSLNKKSKTDSDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCSKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNVMQGGNTEIAVHNINVEPQEMQEMHTIQELQEHQVEQDEQEQQLQLQQEQHEQLQQSQLQPQRIHQATISQAQIIKGQNIKTITITRPDGGLTQQHVLGQEILMPLILPLTVTLTDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286642;
- 90% Identity
- -
- 80% Identity
- -