Basic Information

Insect: Bombus sonorus
Gene Symbol: -
Assembly: GCA_029958995.1
Location: JARWAU010000006.1:4255899-4265865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0004 0.044 14.8 0.7 2 19 452 469 451 473 0.89

2 17 3.7e-05 0.0041 18.0 4.2 1 23 479 501 479 501 0.98

3 17 0.00036 0.04 15.0 0.1 3 23 509 530 507 530 0.94

4 17 0.45 50 5.2 1.8 1 23 537 560 537 560 0.98

5 17 9.9e-05 0.011 16.7 0.7 1 23 564 586 564 586 0.97

6 17 0.0025 0.28 12.3 0.5 1 23 592 614 592 614 0.98

7 17 0.00019 0.021 15.8 2.3 1 23 620 642 620 642 0.96

8 17 6.4e-06 0.00071 20.5 2.7 1 23 647 669 647 669 0.96

9 17 0.74 82 4.5 1.6 1 23 1268 1291 1268 1291 0.98

10 17 8.5e-05 0.0094 16.9 0.4 1 23 1297 1319 1297 1319 0.98

11 17 1.9 2.1e+02 3.2 0.8 1 23 1325 1347 1325 1347 0.85

12 17 7.8e-06 0.00086 20.2 0.4 2 23 1354 1375 1353 1375 0.96

13 17 0.42 46 5.3 0.3 2 23 1382 1404 1381 1404 0.94

14 17 0.00016 0.018 16.1 3.7 1 23 1408 1430 1408 1430 0.98

15 17 0.027 3 9.0 0.7 1 23 1435 1457 1435 1457 0.98

16 17 3.4e-07 3.7e-05 24.5 0.5 1 23 1463 1485 1463 1485 0.98

17 17 7e-05 0.0077 17.2 0.7 1 21 1490 1510 1490 1511 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0004	0.044	14.8	0.7	2	19	452	469	451	473	0.89
2	17	3.7e-05	0.0041	18.0	4.2	1	23	479	501	479	501	0.98
3	17	0.00036	0.04	15.0	0.1	3	23	509	530	507	530	0.94
4	17	0.45	50	5.2	1.8	1	23	537	560	537	560	0.98
5	17	9.9e-05	0.011	16.7	0.7	1	23	564	586	564	586	0.97
6	17	0.0025	0.28	12.3	0.5	1	23	592	614	592	614	0.98
7	17	0.00019	0.021	15.8	2.3	1	23	620	642	620	642	0.96
8	17	6.4e-06	0.00071	20.5	2.7	1	23	647	669	647	669	0.96
9	17	0.74	82	4.5	1.6	1	23	1268	1291	1268	1291	0.98
10	17	8.5e-05	0.0094	16.9	0.4	1	23	1297	1319	1297	1319	0.98
11	17	1.9	2.1e+02	3.2	0.8	1	23	1325	1347	1325	1347	0.85
12	17	7.8e-06	0.00086	20.2	0.4	2	23	1354	1375	1353	1375	0.96
13	17	0.42	46	5.3	0.3	2	23	1382	1404	1381	1404	0.94
14	17	0.00016	0.018	16.1	3.7	1	23	1408	1430	1408	1430	0.98
15	17	0.027	3	9.0	0.7	1	23	1435	1457	1435	1457	0.98
16	17	3.4e-07	3.7e-05	24.5	0.5	1	23	1463	1485	1463	1485	0.98
17	17	7e-05	0.0077	17.2	0.7	1	21	1490	1510	1490	1511	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGACTTTGCGGCCAGTGCGAGAGTATATACATCGACGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAAATCCACACAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAacaaacaacaacaacaatgaaACCAACAAAAATCTTAATTCTCCTAATGATGGGAGTGTTAAAGAAGTAGAGCAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAACAAGTAAAAGGCAATGAAGAAGCTCCAAAAGAGCAGAATAGTATTCAAAGTACAAGTGGAGACAATACAGAGAATATACAAATTGTTCAAAGTTCTGAAACAACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTGCAAATGAAACAGTGACTGATACGCCAATCGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGCCCTAATGAAATTGGTGAGAAACTGGTTGGGAAGCAACAAGATCCACACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAACTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGACATCGAAGATATTAGTTTTACTGTAGAATTATGTAAAAAGGAAAGTGACGATGTAGCTACTGTTCGAGCGCGAGTATTTCCAGATCAGGGTTCCTGTTTGGTGGACAAGGCAATCGTTGGTCTTTTACAAAATCAAAGTTGCGTAGAAGTAAATAGTATAATAAACACCATTATCAACAGTAGCCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAGCAGAAATGGCAGGCTTCTCAGAATCCAGAAGAACTTTTCAGGATCGACGGAGAAGAAATTCGTGTCGACGATAATGTCGAACATGTCGTTACGGATAATCAAAACGGCTACTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAGGACAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAGTATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCGATACAATGCCCAAAATGTCCAAAAAGGTTCAAgtcgaaattttatttaatggaGCACGACAACGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCATATGAAATCACACTTACCTCCACAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTACCGTACGAGATTGTTAAGTCATATAGCTAGCGTACATTTAAAAAATCGTCGCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCGGTTTTGAATGAACATATTAAAACGCGTCACGCGACTACATACACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCGTTCGTGTGCAACGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAGCACGAAGGGCTGAGGAAACATATCTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTGCACGGTGAAAAAAAGCATGCCTGTCCGGAATGCGGACGAAAGTTTAATAGGCGTGATAACATGAAGGTACATAGAAAAAGACACTTTGAAGAAAAAAAGACTAGTAATAGCAAACAGAAGAACGCATCTAGTGGCGACATAAAGAAAAACGATGGGCTGCCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCTTCTGCGACTTTTATGATCGCTGTCATCTGGTACAACAGGGGTTCTTGCAGGCTAATCAAAATGCAACAGATGAGAAGTTCCAGCAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTATTCCTTCTGCGAATGAGATGAAACGGAAAGCTAAGGCATTATCACCTGATAGTCTAAAGAGTAAAAAAAATTATCTGTCCGAAAATAATACATCGTGCTACAGGactggaagaaaagaagaaaacgtcAATCTCGTAAATAATTCGCCTATTAATGATGTTCACTCGGTTGCACAAACTACGGTACATTTAAGCAATGTAATTTCATGTGAAAAAATATCGGGTAGTGATACTAGTAATTTAGAAGAGAATACAAACaatttaaaacataaaaatttaaaCGACAATATACCAAAACAGACTGCAATTCGTACAAGGTCAATGAATAACTTGAACTCGCCGCAAAAAGATGAGGAGGACattaatataaatacacatCAACCTGTAGGACGTAAAAAAGGACGGAAAAACAAATTGAATAAGATGATAGGAGCCAGTTTCTCAGCAGGCAGCAAAAAAAAGAGAATCCAAAATGATATGGGTAAGAGTGATAGTTTAAATAGTAGTTTAAAAAGTTTGGATAACAAATGCAAAAGAAGCTGCCTGCATGTTATTTGTGATAATGATAAGTCCAATAGTGTGATTAATAATATTGAAACCTCTCCCAAACCACAAGTTGAGCAAGAGGCAGTGAAGGAACAGGTGGCAGTGGTGGACACATcctcaaatataatttataccaAAGTTAATGAACCTGATATTGTACacataaataatgaaaatgatcATACTGATGATGatttagtaattaataaattaaaagaaatggaaTATGATAAAAACACAGAAAAACCTGGCAGCTATTTGAACAATACAGAAGATTGTTCTGTAAAAAGTAAAGCAGTATCAGTTATTGTAAAGCAAGAGAAAGGAGAAGCAGAAAGTACTCCTCCTAGCGAGAATGAAAAGACAAATCAGCTTGTTTTGATTCCTAATGAGATACTAATACAGAAAGATAAAACTGTAGTGAAGAATCATGATCAAAAAGGAAAACAGATAGATTTAACGCGGATATCTTGTTCATTGGTAGAGGAATCTGAAAAAACTGAAAATAGTGAGACTAATTTAGTAacagtacaaaatattattaagcATTCTGATGTTTCTAATAATCCACAATCAAAAATACTTACAGAACAAAATCGTGTGACCGTTATAAGGTCTTCGCAATCTAATGAATTATCAAATCCAAAGATGATGCAGGAAGTTTCTACAGAACCATGCATTGCAATAGATGTAATAGACCAAAGTACTACAAATAAGATAGAATGTAACCTCAGCAAACGTTCATTATCTCGATTCAGTGAAgatagttttaataaaattaaaagtaaagATAGATCGTTTGGAAAAATCTCCGAATTGATAAGTGACGAACAAAAACAAGCTATTGAGACTTATTACACGGTGGACATGTCGATAGTAAATTCGGAAGAAGTACAGAAGAACATaacgataattaataaaaagaatatacgCTGCAATATTTGTGGCACTCTTTATCTCAGGATGGATAAGTGTCAGGTACATATTTGGGGACATTTACAAATGAAGCCTTATCAATGCAAAGCTTGTGACTTTGCCACAGTTACTGTTAGCAATGTTCGATGCCATATCAGAAAAagtcatttaaaaattaaaccatTCGTGTGCCATCTGTGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATACAAGTGTAAGCTCTGTGATTTTGCAAGTTCCAGTAGACAAATATTAAGTTATCATAATGCCACTCATAAACCATTAAAGGATATTAGTTGTAAACTTTGTGGAAAAGAGTTTTATTCAAAAAGCAGATTGCGTGCACACATGATCGTACACAATAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCACTAGAAACGCATCATAAAAACATTCACATGCAAGATTATATATGTAACATATGTGGCAAACACACCAAGTCAAGAAAAGCTTTACACAATCATCAAAatgtTCACGCTGCTGCAAAATACAAATGTACTCTATGCCCAAATGTGTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGAAAGTACAAATGTAATGTCTGTGAAAAGACGTTTGGTCAGCAGTCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCAAATCCAGAGCTAAAAAGTCTTTTAAGTAGGAGAGAAAGGACTATATCGTTCAATAACATAGCAGAATTAACTGCAGAATTAAAGACTGGTAATATGACAAGTTCTATGTCTCAAGTTTCTCTAGAAAACCAGAATGAtgaaatattagtagtaaagACTGTGGAGCAAGAACAGAAGACTGCATTAAATCTTTGCAAATTAGGGCTAAATATTTCTTGCATTGAATCAACAGAAAAAACATGGAATTCTGATAAGATGTATAATGAAAAAGAAGTAATGAAATCCTCTGAAATCAATGCAATTAAAGTCACAAATATCAATGACAGGTTAATTCCAGAAAATGAAAATGTGTCAATTTTTGAAAACGTCTTAGGGccagaaaattattaa
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGSVKEVEQRVLRTATKTQRNLRSQQQVKGNEEAPKEQNSIQSTSGDNTENIQIVQSSETTPTRWLRSRQSTETTAANETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLVGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKVHRKRHFEEKKTSNSKQKNASSGDIKKNDGLPQIVCLRCLGILEFFCDFYDRCHLVQQGFLQANQNATDEKFQQDSDAESDKENAIPSANEMKRKAKALSPDSLKSKKNYLSENNTSCYRTGRKEENVNLVNNSPINDVHSVAQTTVHLSNVISCEKISGSDTSNLEENTNNLKHKNLNDNIPKQTAIRTRSMNNLNSPQKDEEDININTHQPVGRKKGRKNKLNKMIGASFSAGSKKKRIQNDMGKSDSLNSSLKSLDNKCKRSCLHVICDNDKSNSVINNIETSPKPQVEQEAVKEQVAVVDTSSNIIYTKVNEPDIVHINNENDHTDDDLVINKLKEMEYDKNTEKPGSYLNNTEDCSVKSKAVSVIVKQEKGEAESTPPSENEKTNQLVLIPNEILIQKDKTVVKNHDQKGKQIDLTRISCSLVEESEKTENSETNLVTVQNIIKHSDVSNNPQSKILTEQNRVTVIRSSQSNELSNPKMMQEVSTEPCIAIDVIDQSTTNKIECNLSKRSLSRFSEDSFNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNSEEVQKNITIINKKNIRCNICGTLYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFVCHLCEKRYVNAILLEEHINTHTGARPYKCKLCDFASSSRQILSYHNATHKPLKDISCKLCGKEFYSKSRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHKNIHMQDYICNICGKHTKSRKALHNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKTFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKSLLSRRERTISFNNIAELTAELKTGNMTSSMSQVSLENQNDEILVVKTVEQEQKTALNLCKLGLNISCIESTEKTWNSDKMYNEKEVMKSSEINAIKVTNINDRLIPENENVSIFENVLGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00223349;
90% Identity: iTF_00222679; iTF_00230828; iTF_00223349; iTF_00224042; iTF_00218584;
80% Identity: -