Basic Information

Insect: Bombus terrestris
Gene Symbol: -
Assembly: GCA_000214255.1
Location: NC:10923700-10935043[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00026 0.016 14.8 0.7 2 19 451 468 450 472 0.89

2 17 2.4e-05 0.0015 18.0 4.2 1 23 478 500 478 500 0.98

3 17 0.00023 0.014 15.0 0.1 3 23 508 529 506 529 0.94

4 17 0.29 18 5.2 1.8 1 23 536 559 536 559 0.98

5 17 6.5e-05 0.004 16.7 0.7 1 23 563 585 563 585 0.97

6 17 0.0016 0.1 12.3 0.5 1 23 591 613 591 613 0.98

7 17 0.00013 0.0077 15.8 2.3 1 23 619 641 619 641 0.96

8 17 4.2e-06 0.00026 20.5 2.7 1 23 646 668 646 668 0.96

9 17 0.39 24 4.8 2.5 1 23 1288 1311 1288 1311 0.98

10 17 0.00012 0.0075 15.8 0.3 1 23 1317 1339 1317 1339 0.97

11 17 1.2 76 3.2 0.8 1 23 1345 1367 1345 1367 0.85

12 17 6.8e-06 0.00041 19.8 0.4 3 23 1375 1395 1373 1395 0.96

13 17 0.13 7.6 6.4 0.3 2 23 1402 1424 1401 1424 0.95

14 17 5.7e-05 0.0035 16.9 3.7 1 23 1428 1450 1428 1450 0.98

15 17 0.018 1.1 9.0 0.7 1 23 1455 1477 1455 1477 0.98

16 17 1.9e-07 1.2e-05 24.7 0.5 1 23 1483 1505 1483 1505 0.98

17 17 4.6e-05 0.0028 17.2 0.7 1 21 1510 1530 1510 1531 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00026	0.016	14.8	0.7	2	19	451	468	450	472	0.89
2	17	2.4e-05	0.0015	18.0	4.2	1	23	478	500	478	500	0.98
3	17	0.00023	0.014	15.0	0.1	3	23	508	529	506	529	0.94
4	17	0.29	18	5.2	1.8	1	23	536	559	536	559	0.98
5	17	6.5e-05	0.004	16.7	0.7	1	23	563	585	563	585	0.97
6	17	0.0016	0.1	12.3	0.5	1	23	591	613	591	613	0.98
7	17	0.00013	0.0077	15.8	2.3	1	23	619	641	619	641	0.96
8	17	4.2e-06	0.00026	20.5	2.7	1	23	646	668	646	668	0.96
9	17	0.39	24	4.8	2.5	1	23	1288	1311	1288	1311	0.98
10	17	0.00012	0.0075	15.8	0.3	1	23	1317	1339	1317	1339	0.97
11	17	1.2	76	3.2	0.8	1	23	1345	1367	1345	1367	0.85
12	17	6.8e-06	0.00041	19.8	0.4	3	23	1375	1395	1373	1395	0.96
13	17	0.13	7.6	6.4	0.3	2	23	1402	1424	1401	1424	0.95
14	17	5.7e-05	0.0035	16.9	3.7	1	23	1428	1450	1428	1450	0.98
15	17	0.018	1.1	9.0	0.7	1	23	1455	1477	1455	1477	0.98
16	17	1.9e-07	1.2e-05	24.7	0.5	1	23	1483	1505	1483	1505	0.98
17	17	4.6e-05	0.0028	17.2	0.7	1	21	1510	1530	1510	1531	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGACTTTGCGGTCAGTGCGAGAGTATCTACATTGATGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAGATCCACTCAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAAcaaacaacaacaacaatgaAACCAACAAAAATCTTAATTCTCCTAATGATGGAAGTGTTAAAGAAGTAGAGCAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAAGTGAAAGGCAATGAAGAAGCTTCAAAAGAGCagaataatattcaaagtacaAGTGGAGACAATACAGAGAATATACAAATTGTTCAAAGTTCTGAAACGACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTACAAACGAAACAGTGACTGATACGCCAATTGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGCCCTAATGAAATTGGTGAGAAACTGGTTGGGAAGCAGCAAGATCCGCACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAATTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGATATTGAAGATATTAGTTTTACTGTAGAATTATGTAAAAAGGAAAGTGACGATGTAGCTACTGTTCGAGCGCGAGTATTTCCAGATCAGGGTTCCTGTTTGGTGGACAAGGCAATCGTTGGtcttttacaaaatcaaaGTTGCGTAGAagtaaatagtataataaacaCCATTATCAACAGTAGCCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAGCAAAAATGGCAGGCTTCTCAAAACCCGGAAGAACTTTTCAGGATCGACGGAGAAGAAATTCGTGTCGACGATAACGTCGAACATGTCGTCACGGATAATCAAAACGGCTACTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAAGACAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAGTATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCGATACAATGCCCAAAATGTCCAAAAAGGTTCAagtcgaaattttatttaatggaGCACGACAACGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCACATGAAATCACACTTACCTCCGCAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTATCGTACGAGATTATTAAGTCATATAGCTAgcgtacatttaaaaaatcgtcgCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCAGTTTTGAATGAGCATATTAAAACGCGTCACGCGACTACATACACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCGTTCGTGTGCAATGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAGCACGAAGGGCTGAGGAAACATATCTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTGCACGGTGAGAAAAAGCATGCCTGTCCGGAATGCGGACGAAAGTTTAATAGGCGTGATAACATGAAGGTACATAGAAAAAGAcactttgaagaaaaaaagactaGTAATAACAAACAGAAGAACGCATCTAGTGGCGACGTTGCTTCCACTGCGTCCAACGAAAAGATAAAGAAGAATGATGGGCTACCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCTTCTGCGACTTTTACGATCGCTGTCATCTGGTACAAGAGGGCTTGCAGGCTAGTCCAAATACAACAGATGAGAAGTTCCAACAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTATTCCATCTGCGAATGAGACAAAACGGAAAGCTAAGGCATTATCACCTGAAAGTATAAAGAGTACAAAAAATTATCTGTCCGAAAATAATACGTCGTACTACAGGactgaaagaaaagaagaaaacatcAATCTCGGAAATATTTCCCCTATTAATGATGTTCACTCGGTTACACAAACTAGGGTACATTTAAACAATGTAATTTCATGTGAAAAAATATCGGGGAATGACCAGCGTGATGCTAGTAATTTAGAAGAGAATACaaacaatttaaaacataaaaatttaaacgacAATATATCGAGAAAGACTGCAGTTCGTACAAGGTCAACGAATAACTTGAACTCGCCGCAAAAAGATGAGGAGGACATTAGTATAAATACACATCAGCCTGTAGGACGTAGAATAGGACGGAAAAACAAATTGGAGAAGATGAGAGGAGTCAGTTTCTCAGCAGGCagcagaaaaagaagaaagagggaagaagaaaaagaaaaaataatccaAACTGATATGGGTAAGAGTGATAGTTTAAATagtagtttaaaaaatttggatAACAAATGCAAAGGAAGCTACCTGCATGTTATTTATGATAATGATAAGTCCAATAGtgtgattaataatattgaaaccTCTCCACACAAAACCAAACCACATGTTGAGCAAGAGGCACTGAAGGAACAGGTGGCAGTAGTGGACACATcctcaaatataatttataccaaAGTTAAGGAACCTaatattgtatacataaataatgaaaatcatACTGATGAtgatttagtaattaataaattaagagAAATGGAATCTGATGGTAAAAACACAGAAAAACCTGACAGCTATTTGAACAATACAGAACATTGGTCTGTAAAAGGTAAAGCAATATCAGTTATTGTAAAGcaagagaaaggagaagcaGAAAGTATTCCTCCtagtgaaattgaaaagacAAATCAGCTTGTTTTGATTCGTAATGAGATacagaaagataaaattgtaGTGAAGAATCATGAtcaaaaagggaaaaagataGATTTAACGCGGATATCTTGTTCACTGGTAGAGGAATCTGAAAAAACTGAAAATAGTGAGACTAATTTAGTAAcagtacaaaatattattaagccCTCTGATGCTTCTAATAATCCGCAATCAAAGATATTTACAGAACAAAATCGTGTAACCGTTATAAGGTCTTCACAATCTaacgaattattaaatctaaaaatgaTGCAGGGAGATTCCACAGAACCGTGCATTGCAATAGATGTAACAGACCAAAGTACTACAAATGAGATAGAATGCAACCTCAGCAAACGTTCATCATCTCGATTCAGTGAAgatagttttaataaaattaaaagtaaagatAGATCGTTTGGAAAAATCTCCGAATTGATAAGTGACGAACAAAAACAAGCTATTGAGACTTATTACACGGTGGACATGTCGATAGTAAATTTAGAAGAAGTCCAAAAGaatataacgataattaataaaaagaatatacgCTGCGATATTTGTGGCTCCCTTTATCTCAGGATGGATAAGTGTCAGGTACATATTTGGGGACATTTACAAATGAAGCCCTATCAATGCAAAGCTTGTGACTTTACCACAGTTACTGTTAGCAATGTTCGATGCCATATCAGAAAaagtcatttaaaaattaaaccaTTTGCGTGCCACCTGTGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATACAAGTGTAAGCTCTGTGATTTTGCAAGTTCCAGTAGACAAATATTAAGTTATCATAATGCCACTCATAAACCATTGAAGGATATTAATTGTAAACTTTGTGGGAAAGAGTTTTATTCAAAAAGCAGATTACGTGCACACATGATCGTACACAACAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCATTAGAAACACATCATAGAAACATTCACATGCAAGATTATGTATGTAACATATGCGGCAAACACACCAAGTCAAGAAAAGCTTTACACAATCATCAAAAtGTTCACGCTGctgcaaaatataaatgtactCTATGCCCAAATGTCTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGAAAGTACAAATGTAATGTCTGTGAAAAGTCGTTTGGTCAGCAGTCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCAAATCCAGAgctaaaaaatcttttaagtAGGAGAGATAGGACTATATCATTCAATAATATAGCAGAATTAACTGCAGAACTAAAGACTGGTAATATGACAAATTCTATGTCTCAAGTTTCTCTAGAAAATCAGAATGATGAAATGTTAGTAGTAAAGACTGTAGAACACAAACAAAAGACTGCATTAAATCTTTGCAAATTAGggttaaatatttcttgcatTGAATCAACAGAAAAATCTTCTGGAAATAATGCAATTAAAGTCACAAATATCAATGACGGATTAATTCCAGAAAATGAAGATGTGTCAATTCTTGAAAACGTCTTAGGACcggaaaattattaa
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGSVKEVEQRVLRTATKTQRNLRSQQVKGNEEASKEQNNIQSTSGDNTENIQIVQSSETTPTRWLRSRQSTETTATNETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLVGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKVHRKRHFEEKKTSNNKQKNASSGDVASTASNEKIKKNDGLPQIVCLRCLGILEFFCDFYDRCHLVQEGLQASPNTTDEKFQQDSDAESDKENAIPSANETKRKAKALSPESIKSTKNYLSENNTSYYRTERKEENINLGNISPINDVHSVTQTRVHLNNVISCEKISGNDQRDASNLEENTNNLKHKNLNDNISRKTAVRTRSTNNLNSPQKDEEDISINTHQPVGRRIGRKNKLEKMRGVSFSAGSRKRRKREEEKEKIIQTDMGKSDSLNSSLKNLDNKCKGSYLHVIYDNDKSNSVINNIETSPHKTKPHVEQEALKEQVAVVDTSSNIIYTKVKEPNIVYINNENHTDDDLVINKLREMESDGKNTEKPDSYLNNTEHWSVKGKAISVIVKQEKGEAESIPPSEIEKTNQLVLIRNEIQKDKIVVKNHDQKGKKIDLTRISCSLVEESEKTENSETNLVTVQNIIKPSDASNNPQSKIFTEQNRVTVIRSSQSNELLNLKMMQGDSTEPCIAIDVTDQSTTNEIECNLSKRSSSRFSEDSFNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNLEEVQKNITIINKKNIRCDICGSLYLRMDKCQVHIWGHLQMKPYQCKACDFTTVTVSNVRCHIRKSHLKIKPFACHLCEKRYVNAILLEEHINTHTGARPYKCKLCDFASSSRQILSYHNATHKPLKDINCKLCGKEFYSKSRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHRNIHMQDYVCNICGKHTKSRKALHNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKSFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKNLLSRRDRTISFNNIAELTAELKTGNMTNSMSQVSLENQNDEMLVVKTVEHKQKTALNLCKLGLNISCIESTEKSSGNNAIKVTNINDGLIPENEDVSILENVLGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00223349;
90% Identity: iTF_00228831;
80% Identity: -