Basic Information

Insect: Bombus lapidarius
Gene Symbol: -
Assembly: GCA_936014575.1
Location: CAKXZU010000001.1:3526092-3536123[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00039 0.027 14.8 0.7 2 19 452 469 451 473 0.89

2 17 3.6e-05 0.0025 18.0 4.2 1 23 479 501 479 501 0.98

3 17 0.00035 0.024 14.9 0.1 3 23 509 530 507 530 0.94

4 17 0.44 31 5.2 1.8 1 23 537 560 537 560 0.98

5 17 9.6e-05 0.0067 16.7 0.7 1 23 564 586 564 586 0.97

6 17 0.0024 0.17 12.3 0.5 1 23 592 614 592 614 0.98

7 17 0.00019 0.013 15.8 2.3 1 23 620 642 620 642 0.96

8 17 6.2e-06 0.00043 20.5 2.7 1 23 647 669 647 669 0.96

9 17 3 2.1e+02 2.6 1.8 1 23 1280 1303 1280 1303 0.97

10 17 0.00018 0.013 15.8 0.3 1 23 1309 1331 1309 1331 0.97

11 17 7.8 5.4e+02 1.3 1.7 1 23 1337 1359 1337 1359 0.85

12 17 7.5e-06 0.00053 20.2 0.4 2 23 1366 1387 1365 1387 0.96

13 17 0.18 13 6.4 0.3 2 23 1394 1416 1393 1416 0.95

14 17 8.4e-05 0.0059 16.9 3.7 1 23 1420 1442 1420 1442 0.98

15 17 0.026 1.9 9.0 0.7 1 23 1447 1469 1447 1469 0.98

16 17 2.9e-07 2e-05 24.6 0.5 1 23 1475 1497 1475 1497 0.98

17 17 6.8e-05 0.0048 17.2 0.7 1 21 1502 1522 1502 1523 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00039	0.027	14.8	0.7	2	19	452	469	451	473	0.89
2	17	3.6e-05	0.0025	18.0	4.2	1	23	479	501	479	501	0.98
3	17	0.00035	0.024	14.9	0.1	3	23	509	530	507	530	0.94
4	17	0.44	31	5.2	1.8	1	23	537	560	537	560	0.98
5	17	9.6e-05	0.0067	16.7	0.7	1	23	564	586	564	586	0.97
6	17	0.0024	0.17	12.3	0.5	1	23	592	614	592	614	0.98
7	17	0.00019	0.013	15.8	2.3	1	23	620	642	620	642	0.96
8	17	6.2e-06	0.00043	20.5	2.7	1	23	647	669	647	669	0.96
9	17	3	2.1e+02	2.6	1.8	1	23	1280	1303	1280	1303	0.97
10	17	0.00018	0.013	15.8	0.3	1	23	1309	1331	1309	1331	0.97
11	17	7.8	5.4e+02	1.3	1.7	1	23	1337	1359	1337	1359	0.85
12	17	7.5e-06	0.00053	20.2	0.4	2	23	1366	1387	1365	1387	0.96
13	17	0.18	13	6.4	0.3	2	23	1394	1416	1393	1416	0.95
14	17	8.4e-05	0.0059	16.9	3.7	1	23	1420	1442	1420	1442	0.98
15	17	0.026	1.9	9.0	0.7	1	23	1447	1469	1447	1469	0.98
16	17	2.9e-07	2e-05	24.6	0.5	1	23	1475	1497	1475	1497	0.98
17	17	6.8e-05	0.0048	17.2	0.7	1	21	1502	1522	1502	1523	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGACTTTGCGGTCAGTGCGAGAGTATATACATCGACGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAGATCCACACAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAACAAACAACAACAACAATGAAACCAACAAAAATCTTAATTCTCCTAATGATGGAAGTGTTAAAGAAGTAGAACAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAACAAGTAAAAGGCAATGAAGAAGCTCCAAAAGAGCAGAATAATATTCAAAGTACAAGTGGAGACAATACAGAGAATATACAAATTGTTCAAAGTTCTGAAACAACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTGCAAATGAAACAGTGACTGATACGCCAATCGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGTCCTAATGAAATTGGTGAGAAACTGGTTGGGAAGCAACAAGATCCGCACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAACTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGACATTGAAGATATTAGTTTTACTGTAGAATTATGTAAAAAGGAAAGTGACGATGTAGCTACTGTTCGAGCGAGAGTATTTCCAGATCAGGGTTCCTGTTTGGTGGACAAGGCAATCGTTGGTCTTTTACAAAATCAAAGTTGTGTAGAAGTAAATAGTATAATAAACACCATTATCAACAGTAGCCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAGCAGAAATGGCAGGCTTCTCAGAACCCAGAAGAACTTTTCAGGATCGACGGAGAAGAAATTCGTGTCGACGATAACGTCGAACATGTCGTCACGGATAATCAAAACGGCTATTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAGGACAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAGTATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCGATACAATGCCCAAAATGTCCAAAAAGGTTCAAGTCGAAATTTTATTTAATGGAGCACGACAACGTACACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCACATGAAATCACATTTACCTCCGCAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTACCGTACGAGATTGTTAAGTCATATAGCTAGCGTACATTTAAAAAATCGTCGCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCAGTTTTGAATGAACATATTAAAACGCGTCACGCGACTACATATACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCGTTCGTGTGCAACGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAGCACGAAGGGCTGAGGAAACATATCTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTGCACGGTGAAAAAAAGCATGCCTGTCCGGAATGTGGACGAAAGTTTAATAGGCGTGATAACATGAAGGTACATAGAAAAAGACACTTTGAAGAAAAAAAGACTAGTAATAGCAAACAGAAGAACGCATCTAGTGGCGACATAAAGAAGAACGATGGGCTGCCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCTTCTGCGACTTTTACGATCGCTGTCATCTGGTACAACAGGAGTTCTTGCAGGCAAGTCAAAATACAACAGATGAGAAGTTCCAGCAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTGTTCCATCTGCGAATGAGATGAAACGGAAAGCTAAAGCATTATCACCTGAAAGTCTAAAGGGTACAAAAAATTATCTGTCCGAAAATAATACGTCGTACTACAGGACTGAAAGAAAAGAAGAAAACGTCAATCTCGTAAATAATTCTCCTATTAATGATGTTCACTCGGTTACACAAACTACGGTACATTTAAGCAATGTAATTTCATGTGAAAAAATATCGGGGAGTGACCAGCGTGATGCTAGTAATTTAGAAGAGAATACAAACAATTTAAAACATAAAAATTTAAACGACAATATATCAAAAAAGACTGCAATTTGTACAAGGTCAACGAATAACTTCAACTCGCCGCAAAAAGATGAGGAGGACATTAGTATAAATACATATCAGCCTGTAGGACGTAGAAAAGGACGGAAAAACAAATTGAAGAGGATGAGAGGAGACAATTTCTCAGCAGGCAGTAGAAAAAAGAAAAAGGGGGAAGAAGAAAAAGAAAAGATAATCCAAAATGATATGGATAAGAGTGATAGTTTAAATAGCAGTTTAAAAAATTTGGATAACAAATGCAAAAGAAGCTGCCTACATGTTATTTATGATAACGATAAGTCCAATAGTGTGATTAATAATATTGAAACCTCCTCCAAACCACAAGTTGAGCAAGAGGCAGTGAAGGAACAGGTGACAGTGGTGGACACATCCTCAAATATAATTTATACCAAAGTTAATGAACCTGATATTGTATACACAAATAATGAAAATCATCATATTGGTGATGATTTAGTAATTAATAAATTAAGAGAAATGGAATCTGATGGTAAAAGCACAGAAAAACCTGGCAGCTATTTGAACAATACAGAAGATTGGTCTGCAAAAAGTAAAGCAATATCAGTTATTGTAAAACAAGAGAAAGGAGAAGCAGAAAGTACTTCTAGCAAGGCTGGGAAGACAAATCAGCTTGTTTTGATTCCTAATGAGATACTAATACAGAAAGATAAAACTGTAGTGAAGAATCATGATCAAAAAGGAGAAAAGGTAGATTTAACGCGGATATCTTGTTCATTGGAAGAGGAATCTGAAAAAACTGAAAATAGTGAGACTAATTTAGTAATAGTACAAAATATTATTAAGCATTCTGATGTTCCTAATAATCCACAATCAAAAATACTTACAGAACAAAATCGTGTGACCGTTATAAGGTCTTCGCAATCTAATGAATTATCAAATCCAAAGATGATGCAGGAAGATTCCACAGAACCGTGCATTGCAATAGATGTAATAGACCAAAGTACTACAAATGAGATAGAATGCAACCTCAGCAAACGTTCATTATCTCGATTGAGTAAAGATGGTTTTAATAAAATTAAAAGTAAAGATAGATCGTTTGGAAAAATCTCCGAATTGATAAGTGATGAACAAAAACAAGCTATTGAGACTTATTATACGGTGGACATGTCGATTGTAAATTCGGAAGAAGTACAGAAGAACATAACGATAATTAATAAAAAGAATATACGCTGCAATATTTGTGGTTCCCTTTATCTCAGGATGGATAAGTGTCAAGTACATATTTGGGGACATTTACAAATGAAGCCCTATCAATGCAAAGCTTGTGACTTTGCCACAGTTACTGTTACCAATGTTCGATGCCATATCAGAAAAAGTCATTTAAAAATTAAACCATTCGCGTGCCATCTATGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCACACAAGTGTAAGCTCTGTGATTTTGCAAGTTCCAGTAGACAAATATTAAGTTATCATAATGCTACTCATAAACCAATGAAGGATATTAGCTGTAAACTTTGTGGAAAAGAGTTTTATTCAAAAAGCAGATTACGTGCACACATGATCGTACACAACAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCATTAGAAACGCATCATAGAAACATTCACATGCAAGATTATGTATGTAACATATGTGGCAAACACACCAAGTCAAGAAAAGCTTTACACAATCATCAAAATGTTCACGCTGCTGCAAAATACAAATGTACTCTATGCCCAAATGTGTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGAAAGTACAAATGTAATGTCTGTGAAAAGTCATTTGGTCAGCAGTCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCGAATCCAGAACTAAAAAATCTTTTAAGTAGGAGAGAAAGGACTATATCATTCAATAATATAGCAGAATTAACTGCAGAACTAAAGACTGGTAATATGGCAAATTCTATGTCTCAAGTTTCTCTAGAAAACCAGAATGATGAAATGTTAGTAGTAAAGACTGTGGAGCACGAACAAAAGACTGCATTAAATCTTTGCAAATTAGGGCTAAATATTTCTTGCATTAAACCAACAGAAAAAACATGGAATTCTGATAAGATGTATAATGAAAAAATAGTAATGAAATCTTCTGAAATCAATGCAATTAAAGTCACAAATATCAATGACAGATTAATTCCAGAAAATGAAAATGTGTTAATTCTTGAAAACATCTTAGGACCAGAAAATTATTAA
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGSVKEVEQRVLRTATKTQRNLRSQQQVKGNEEAPKEQNNIQSTSGDNTENIQIVQSSETTPTRWLRSRQSTETTAANETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLVGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKVHRKRHFEEKKTSNSKQKNASSGDIKKNDGLPQIVCLRCLGILEFFCDFYDRCHLVQQEFLQASQNTTDEKFQQDSDAESDKENAVPSANEMKRKAKALSPESLKGTKNYLSENNTSYYRTERKEENVNLVNNSPINDVHSVTQTTVHLSNVISCEKISGSDQRDASNLEENTNNLKHKNLNDNISKKTAICTRSTNNFNSPQKDEEDISINTYQPVGRRKGRKNKLKRMRGDNFSAGSRKKKKGEEEKEKIIQNDMDKSDSLNSSLKNLDNKCKRSCLHVIYDNDKSNSVINNIETSSKPQVEQEAVKEQVTVVDTSSNIIYTKVNEPDIVYTNNENHHIGDDLVINKLREMESDGKSTEKPGSYLNNTEDWSAKSKAISVIVKQEKGEAESTSSKAGKTNQLVLIPNEILIQKDKTVVKNHDQKGEKVDLTRISCSLEEESEKTENSETNLVIVQNIIKHSDVPNNPQSKILTEQNRVTVIRSSQSNELSNPKMMQEDSTEPCIAIDVIDQSTTNEIECNLSKRSLSRLSKDGFNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNSEEVQKNITIINKKNIRCNICGSLYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVTNVRCHIRKSHLKIKPFACHLCEKRYVNAILLEEHINTHTGARPHKCKLCDFASSSRQILSYHNATHKPMKDISCKLCGKEFYSKSRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHRNIHMQDYVCNICGKHTKSRKALHNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKSFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKNLLSRRERTISFNNIAELTAELKTGNMANSMSQVSLENQNDEMLVVKTVEHEQKTALNLCKLGLNISCIKPTEKTWNSDKMYNEKIVMKSSEINAIKVTNINDRLIPENENVLILENILGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00223349;
90% Identity: iTF_00228831;
80% Identity: -