Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067410.1:10485916-10495730[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00041 0.032 14.8 0.7 2 19 452 469 451 473 0.89

2 17 3.8e-05 0.003 18.1 4.2 1 23 479 501 479 501 0.98

3 17 0.00037 0.029 15.0 0.1 3 23 509 530 507 530 0.94

4 17 0.46 36 5.2 1.8 1 23 537 560 537 560 0.98

5 17 0.0001 0.0079 16.7 0.7 1 23 564 586 564 586 0.97

6 17 0.0025 0.2 12.3 0.5 1 23 592 614 592 614 0.98

7 17 0.0002 0.015 15.8 2.3 1 23 620 642 620 642 0.96

8 17 0.0031 0.24 12.1 0.1 1 17 647 663 647 664 0.90

9 17 0.76 59 4.5 1.6 1 23 1253 1276 1253 1276 0.98

10 17 0.00019 0.015 15.9 0.3 1 23 1282 1304 1282 1304 0.97

11 17 0.94 74 4.2 0.9 1 23 1310 1332 1310 1332 0.92

12 17 5e-05 0.0039 17.7 0.4 3 23 1340 1360 1338 1360 0.96

13 17 0.36 28 5.6 0.3 2 23 1367 1389 1366 1389 0.95

14 17 8.8e-05 0.0069 16.9 3.7 1 23 1393 1415 1393 1415 0.98

15 17 0.028 2.2 9.1 0.7 1 23 1420 1442 1420 1442 0.98

16 17 3.4e-07 2.7e-05 24.5 0.5 1 23 1448 1470 1448 1470 0.98

17 17 7.1e-05 0.0056 17.2 0.7 1 21 1475 1495 1475 1496 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00041	0.032	14.8	0.7	2	19	452	469	451	473	0.89
2	17	3.8e-05	0.003	18.1	4.2	1	23	479	501	479	501	0.98
3	17	0.00037	0.029	15.0	0.1	3	23	509	530	507	530	0.94
4	17	0.46	36	5.2	1.8	1	23	537	560	537	560	0.98
5	17	0.0001	0.0079	16.7	0.7	1	23	564	586	564	586	0.97
6	17	0.0025	0.2	12.3	0.5	1	23	592	614	592	614	0.98
7	17	0.0002	0.015	15.8	2.3	1	23	620	642	620	642	0.96
8	17	0.0031	0.24	12.1	0.1	1	17	647	663	647	664	0.90
9	17	0.76	59	4.5	1.6	1	23	1253	1276	1253	1276	0.98
10	17	0.00019	0.015	15.9	0.3	1	23	1282	1304	1282	1304	0.97
11	17	0.94	74	4.2	0.9	1	23	1310	1332	1310	1332	0.92
12	17	5e-05	0.0039	17.7	0.4	3	23	1340	1360	1338	1360	0.96
13	17	0.36	28	5.6	0.3	2	23	1367	1389	1366	1389	0.95
14	17	8.8e-05	0.0069	16.9	3.7	1	23	1393	1415	1393	1415	0.98
15	17	0.028	2.2	9.1	0.7	1	23	1420	1442	1420	1442	0.98
16	17	3.4e-07	2.7e-05	24.5	0.5	1	23	1448	1470	1448	1470	0.98
17	17	7.1e-05	0.0056	17.2	0.7	1	21	1475	1495	1475	1496	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGACTTTGCGGCCAATGCGAGAGTATATACATCGACGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAAATCCACACAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAAcaaacaacaacaacaatgaaACCAACAAAAATCTTAATTCTCCTAATGATGGAAGTGTTAAAGAAGTAGAGCAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAACAAGTAAAAGGCAATGAAGAAGCTCCAAAAGAGCAGAATAGTATTCAAAGTACAAGTGGAGACAATACAGAGAATAcacaaattattcaaagttCTGAAACAACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTGCAAATGAAACAGTGACTGATACGCCAATCGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGCCCTAATGAAATTGGTGAGAAACTACTTGGGAAGCAGCAAGATCCACACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAACTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGACATTGAAGATATTAGTTTTACTGtagaattatgtaaaaagGAAAGTGACGATGTAGCTACTGTTCGAGCGCGAGTATTTCCAGATCAAGGTTCCTGTTTGGTGGACAAGGCAATCGTTGgtcttttacaaaatcaaaGTTGCGTAGAagtaaatagtataataaacaCCATTATCAACAGTAGCCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAGCAGAAATGGCAGGCTTCTCAGAACCCAGAAGAACTTTTCAGGATCGACGGAGAAGAAATTCGTGTCGACGATAACGTCGAACATGTCGTTACGGATAATCAAAACGGCTACTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAGGATAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAGTATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCGATACAATGCCCAAAATGTCCAAAAAGGTTCAagtcgaaattttatttaatggaGCACGACAACGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCACATGAAATCACACTTACCTCCACAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTACCGTACGAGATTGTTAAGTCATATAGCTAgcgtacatttaaaaaatcgtcgCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCAGTTTTGAATGAACATATTAAAACGCGTCACGCGACTACATACACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCGTTCGTGTGTAACGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAACACGAAGGGCTGAGGAAACATATCTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTGCACGGTGAAAAAAAGCATGCCTGTCCGGAATGCGGACGAAAGTTTAATAGGCGTGATAACATGAAGataaagaaaaacgatGGGCTGCCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCATCTGCGACTTTTATGATCGCTGTCATCTGGTACAACAGGGGTTCTTGCAGGCTAATCAAAATGCAACAGATGAGAAGTTCCAGCAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTATTCCTTCTGCGAATGAGATGAAACGGAAAGCTAAGGCATTATCACCTGACAGTCTAAAGAGTACAAAAAATTATCTGTCCGAAAATAATACATCATGCTACAGGACTGgaagaaaagacgaaaacGTCAATCTCGTAAATAATTCCCCTATTAATGATGTTCACTCGGTTGCACAAACTATGGTGCATTTAAGCAATGTAATTTcatgtgaaaaaatatcggGGAGTGATGCTAGTAATTTAGAAGAGAATACAAacaatttaaaacataaaaatttaaacgacAGTATATCAAAAAAGACTGCAATTCGTACAAGGTCAATGAATAACTTGAACTCGCCGCAAAAAGATGAGGAGgacattaatataaatacacatcAACCTGTAGGACGTAGAAAAGGACggaaaaacaaattgaagaGGATGAAAGGAGCCAGTTTCTCAGCAGGCaacagaaaaaagagaaaagtggaagaaaaaaaagaaaagataatcCAAAATGATATGGGTAAGAGTGATAGTTTAAATAGTAGTTTAAAAAGTTTGGATAACAAATGCAAAAGAAGCTGCCTGCATGTTATTTATGATAATGATAAGTCCAATAGtgtgattaataatattgaaaccTCCCCCAAACCACAAGTTGAGCAAGAGGCAGTGAAGGAACAGGTGGCAGTGGTGGACACATcctcaaatataatttataccaaAGTTAATGAACCTGatattgtatacataaataatgaaaattatcataCTGATGATGAttcagtaattaataaattaaaagaaatggaatctgATAAAAACACAGAAAAACCTGGCAGCTATTTGAACAATACAGAAGATTGTTCTGTAAAAAGTAAAGCAATATCAGTTATTGTAAAgcaagagaaaggagaagcaGAAAGTACTCCTCctagaaagaatgaaaagacaAATCAGCTTGTTTCGATTCCTAATGAGATACTAATGATGATAGATAAAACTGTAGTGAAGAATCATgatcaaaaaggaaaaaagatagatTTAACGCGGATATCTTGTTCATTGGTAGAGGAATCTGAAAAAACTGAAAATAGTGAGACAAATTTAGTAAcagtacaaaatattattaagcaTTCTGATGTTTCTAATAATCCgcaatcaaaaatatttacagaacaAAATCGTGTGACCGTTATAAGGTCTTTGCGATCTAATGAATTATCAAATCCAAAGATGATGCAGGAAGATTCCACAAAACCGTGCATTGCAATAGATGTAATAGACCAAAGTACTACAAATAAGATAGAATGTAACCTCAGCAAACGTTCATTATCTCGATTCAATGAAGATagtcttaataaaattaaaagtaaagataGATCGTTTGGAAAAATCTCCGAATTGATAAGTGACGAACAAAAACAAGCTATTGAGACTTATTACACGGTGGACATGTCGATAGTAAATTTGGAAGAAGTACAGAAGAacataacgataattaataaaaagaatatacgCTGCAATATTTGTGGCACTATTTATCTCAGGATGGATAAGTGTCAGGTACATATTTGGGGACATTTACAAATGAAGCCCTATCAATGCAAAGCTTGTGACTTTGCCACAGTTACTGTTAGTAATGTTCGATGCCATATCAGAAAaagtcatttaaaaattaaaccaTTCGCGTGCCATCTGTGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATACAAGTGCAAGCTCTGTGATTTTGCAAGTTCCAGtagacaaatattaaattatcataatgCCACTCATAAACCATTGAAGGATATTAATTGTAAACTTTGTGGAAAAGAGTTTTATTCAAAAAACAGATTGCGTGCACACATGATTGTACACAATAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCATTAGAAATGCATCATAGAAACATTCACATGCAAGATTATGTCTGTAACATATGCGGCAAACACACTAAGTCAAGAAAAGCTTTACACAATCATCAAAatGTTCACGCTGCTGCAAAATACAAATGTACTCTATGCCCAAATGTGTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGAAAGTATAAATGTAATGTCTGTGAAAAGACGTTTGGTCAGCAATCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCAAATCCAGAGCTAAAAAGTCTTTTAAGTAAGAGAGAAAGGACAATATCGTTCAATAACATAGCAGAATTAACTGCAGAACTAAAGACTGGTAATATGACAAGTTCTATGTCTCAAGTTTCTCTAGAAAACCAGAATGATGAAATATTAGTAGTAAAGACTGTGGAGCAAGAACAGAAGACTGCATTAAATCTTTGCAAATTAGGGCTAAATATTTCTTGCATTGAACCAACAGAAAAAACATGGAATTCTGATAAGAtgtataatgaaaaagaagtaatGAAATCCTCTGAAATCAATGCAATTAAAGTCACAAATATCAATGACAGGTTAATtccagaaaatgaaaatgtgtcaatttttgaaaatgtctTAGGgccagaaaattattaa
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGSVKEVEQRVLRTATKTQRNLRSQQQVKGNEEAPKEQNSIQSTSGDNTENTQIIQSSETTPTRWLRSRQSTETTAANETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLLGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKKNDGLPQIVCLRCLGILEFICDFYDRCHLVQQGFLQANQNATDEKFQQDSDAESDKENAIPSANEMKRKAKALSPDSLKSTKNYLSENNTSCYRTGRKDENVNLVNNSPINDVHSVAQTMVHLSNVISCEKISGSDASNLEENTNNLKHKNLNDSISKKTAIRTRSMNNLNSPQKDEEDININTHQPVGRRKGRKNKLKRMKGASFSAGNRKKRKVEEKKEKIIQNDMGKSDSLNSSLKSLDNKCKRSCLHVIYDNDKSNSVINNIETSPKPQVEQEAVKEQVAVVDTSSNIIYTKVNEPDIVYINNENYHTDDDSVINKLKEMESDKNTEKPGSYLNNTEDCSVKSKAISVIVKQEKGEAESTPPRKNEKTNQLVSIPNEILMMIDKTVVKNHDQKGKKIDLTRISCSLVEESEKTENSETNLVTVQNIIKHSDVSNNPQSKIFTEQNRVTVIRSLRSNELSNPKMMQEDSTKPCIAIDVIDQSTTNKIECNLSKRSLSRFNEDSLNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNLEEVQKNITIINKKNIRCNICGTIYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFACHLCEKRYVNAILLEEHINTHTGARPYKCKLCDFASSSRQILNYHNATHKPLKDINCKLCGKEFYSKNRLRAHMIVHNKDKAVMCKLCSAYLSNAEALEMHHRNIHMQDYVCNICGKHTKSRKALHNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKTFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKSLLSKRERTISFNNIAELTAELKTGNMTSSMSQVSLENQNDEILVVKTVEQEQKTALNLCKLGLNISCIEPTEKTWNSDKMYNEKEVMKSSEINAIKVTNINDRLIPENENVSIFENVLGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00223349;
90% Identity: iTF_00228831;
80% Identity: -