Basic Information

Insect: Bombus dahlbomii
Gene Symbol: -
Assembly: GCA_037178635.1
Location: CM074103.1:9093586-9103647[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00039 0.036 14.8 0.7 2 19 452 469 451 473 0.89

2 17 3.7e-05 0.0034 18.1 4.2 1 23 479 501 479 501 0.98

3 17 0.00035 0.033 15.0 0.1 3 23 509 530 507 530 0.94

4 17 0.44 41 5.2 1.8 1 23 537 560 537 560 0.98

5 17 9.7e-05 0.009 16.7 0.7 1 23 564 586 564 586 0.97

6 17 0.0024 0.23 12.3 0.5 1 23 592 614 592 614 0.98

7 17 0.00019 0.018 15.8 2.3 1 23 620 642 620 642 0.96

8 17 0.0029 0.27 12.1 0.1 1 17 647 663 647 664 0.90

9 17 0.73 68 4.5 1.6 1 23 1252 1275 1252 1275 0.98

10 17 0.00027 0.025 15.4 0.1 1 23 1281 1303 1281 1303 0.97

11 17 1.9 1.7e+02 3.3 0.8 1 23 1309 1331 1309 1331 0.85

12 17 7.6e-06 0.00071 20.2 0.4 2 23 1338 1359 1337 1359 0.96

13 17 0.19 17 6.4 0.3 2 23 1366 1388 1365 1388 0.95

14 17 8.5e-05 0.0079 16.9 3.7 1 23 1392 1414 1392 1414 0.98

15 17 0.027 2.5 9.1 0.7 1 23 1419 1441 1419 1441 0.98

16 17 3.3e-07 3.1e-05 24.5 0.5 1 23 1447 1469 1447 1469 0.98

17 17 6.9e-05 0.0064 17.2 0.7 1 21 1474 1494 1474 1495 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00039	0.036	14.8	0.7	2	19	452	469	451	473	0.89
2	17	3.7e-05	0.0034	18.1	4.2	1	23	479	501	479	501	0.98
3	17	0.00035	0.033	15.0	0.1	3	23	509	530	507	530	0.94
4	17	0.44	41	5.2	1.8	1	23	537	560	537	560	0.98
5	17	9.7e-05	0.009	16.7	0.7	1	23	564	586	564	586	0.97
6	17	0.0024	0.23	12.3	0.5	1	23	592	614	592	614	0.98
7	17	0.00019	0.018	15.8	2.3	1	23	620	642	620	642	0.96
8	17	0.0029	0.27	12.1	0.1	1	17	647	663	647	664	0.90
9	17	0.73	68	4.5	1.6	1	23	1252	1275	1252	1275	0.98
10	17	0.00027	0.025	15.4	0.1	1	23	1281	1303	1281	1303	0.97
11	17	1.9	1.7e+02	3.3	0.8	1	23	1309	1331	1309	1331	0.85
12	17	7.6e-06	0.00071	20.2	0.4	2	23	1338	1359	1337	1359	0.96
13	17	0.19	17	6.4	0.3	2	23	1366	1388	1365	1388	0.95
14	17	8.5e-05	0.0079	16.9	3.7	1	23	1392	1414	1392	1414	0.98
15	17	0.027	2.5	9.1	0.7	1	23	1419	1441	1419	1441	0.98
16	17	3.3e-07	3.1e-05	24.5	0.5	1	23	1447	1469	1447	1469	0.98
17	17	6.9e-05	0.0064	17.2	0.7	1	21	1474	1494	1474	1495	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGTCTTTGCGGCCAGTGCGAGAGTATATACATCGACGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAGATCCACACAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAacaaacaacaacaacaatgaAACCAACAAAAATCTTAATTCTCCTAATGATGGGAATGTTAAAGAAGTAGAGCAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAACAAGTAAAAGGCAATGAAGAAGCTCCAAAAGAGCAGAATAGTATTCAAAGTACAAGTGGAGACAATACAGAGAATATACAAATTGTTCAAAGTTCTGAAACAACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTGCAAATGAAACAGTGACTGATACGCCAATCGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGCCCTAATGAAATTGGTGAGAAACTGGTTGGGAAGCAGCAAGATCCACACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAACTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGACATTGAAGATATTAGTTTTACTGTAGAATTATGTAAAAAGGAAAGTGACGATGTAGCTACTGTTCGAGCGCGAGTATTTCCAGATCAGGGTTCCTGTTTGGTGGACAAGGCAATCGTTGGTCTTTTACAAAATCAAAGTTGCGTAGAAgtaaatagtataataaacACCATTATCAACAGTAGCCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAGCAGAAATGGCAGGCTTCTCAGAACCCAGAAGAACTTTTCAGAATCGACGGAGAAGAAATTCGTGTCGACGATAACGTCGAACATGTCGTTACGGATAATCAAAACGGCTACTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAAGACAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAATATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCAATACAATGCCCAAAATGTCCAAAAAGGTTCAagtcgaaattttatttaatggaGCACGACAACGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCACATGAAATCACACTTACCTCCACAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTACCGTACGAGATTGTTAAGTCATATAGCTAgcgtacatttaaaaaatcgtcGCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCAGTTTTGAATGAACATATTAAAACGCGTCACGCGACTACATACACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCATTCGTGTGCAACGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAGCACGAAGGGCTGAGGAAACATATCTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTACATGGTGAAAAAAAGCATGCCTGTCCGGAATGCGGACGAAAGTTTAATAGGCGTGATAACATGAAGataaagaaaaacgatGGGCTGCCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCTTCTGCGACTTTTACGATCGCTGTCATCTGGTACAACAGGGGTTCTTACAGGCTAATCAAAATGCAACAGATGAGAAGTTCCAGCAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTATTCCTTCTGCGAATGAGATGAAACGGAAAGCTAAGGGATTATCACCTAACAGTCTAAAGagtacaaaaaattatttgtccgAAAATAATACATCGTGCTACAGGTctggaagaagagaagaaaacgtCAATCTCGTAAATAATTCTCCTATTAATGATGTTCACTCGGTTACACAAACTACAGTACATTTAAGCAATGTAATTTCATGTGAAAAAATATCGGGGAGTGATGCTAGTAATTTAGAAGAGAATACAAACAatgtaaaacataaaaatttaaacgacaatatatcaaaaaatactGCAATTCGTACAAGGTCAACGAATAACTTGAACTTGCCGCAAAAAGATGAGGaggatattaatataaatacacatCAACCTGTAGGACGTAGAAAAGGACCGAAAAACAAACTGAAGATGAGAGAAGCCAGTTTCGCAGCAGGCAgcaaaaaaaagagaaaagtgaaagaagaaaaagaaaagataatcCAAAATGATATGGGTAAGAGTGATAGTTTAAATAGTAGTTTAAAAAGTTTGGATAACAAATGCAAAGGAAGCTGCCtgcatattatttatgataatgATAAGTCCAATAGTgtgattaataatattgaaaccTCCCCCAAACCACAAGTTGAGCAAGAGGCAGTGGAGGAACAGGTGGCAGTGGTGGACACATcctcaaatataatttataccaaAGTTAATGAACCTGATattgtatacataaataatgaaaattgtcATACTGGTGACGATTtagtaattagtaaattaaaagaaatggaatctgATAAAAACACAGAAAAACCTGGCAGCTATTTGAACAATACAGAAGATTGTTCTGTAAAAAGTAAAGCAATATCAGTTATTGTAAAGcaagagaaaggagaaggagaaagtaCTTCTCCTAGCGAGAATGAAAAGACAAATCAGCTTGTTTTGATTCCTAATGAGATACTAATGCAGAAAGATAAAACTGTAGTGAAGATTCATGatcaaaaaggaaaaaagatagaTTTAACGGGGATATCTTGTTCATTGGTAGAGGAATCtgaaaaaactgaaaatagTGAGACTAATTTAGTAAcagtacaaaatattattaagcaTTCTGATGTTTCTAATCATCcgcaaacaaaaatatttgcagaACAAAATCGTATGACCGTTATAAGGTCTTCGCaatctaataaattatcaaatccAAAGATGATGCAGGAAGATTCCACAGAACCGTGCATTGCAATAGATACAATTGACCAAAGTACTACAAATAAGATAGAACGTAACCTCAGCAAACGTTCATTATCTCGATTCAGTggagataattttaataaaattaaaagtaaggATAGATCGTTTGGAAAAATCTCCGAATTGATAAGTGACGAACAAAAACAAGCTATTGAGACTTATTACACGGTGGACATGTCGATAGTAAATTCGGAAGAAGTACAGAAGAACataacgataattaataaaaagaatatacgCTGCAATATTTGTGGCACTCTTTATCTCAGGATGGATAAGTGTCAGGTACATATTTGGGGACATTTACAAATGAAGCCCTATCAATGCAAAGCTTGTGACTTTGCCACTGTTACTGTTAGCAATGTTCGATGCCATATCAGAAAAagtcatttaaaaattaaaccatTCGCGTGCAATTTGTGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATACAAGTGCAAGCTCTGTGATTTTGCAAGTTCCAGTAGACAAATATTAAGTTATCATAATGCCACTCATAAACCATTGAAGgATATTAGTTGTAAACTTTGTGGAAAAGAGTTTTATTCAAAAAGCAGATTGCGTGCACACATGATTGTACACAACAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCACTAGAAACGCATCATAGAAACATTCACATGCAAGATTATGTATGTAACATATGCGGCAAACACACTAAGTCAAGAAAAGCTTTACACAATCATCAAAatgTTCATGCTGCTGCAAAATACAAATGTACTCTATGCCCAAATGTGTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGGAAGTACAAATGTAATGTCTGTGAAAAGACGTTTGGTCAGCAGTCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATTAGATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCAAATCCAGAGCTAAAAAGTCTTTTAAGTAGGAGAGAAAGGACTATATCGTTCAATAACATAGCAGAATTAACTGCAGAACTAAAGACTGGTAATATGACAAGTTCTATGTCTCAAGTTTCTCTAGAAAACcagaataatgaaatattagtaGTAAAGACTGTGGAGCAAGAACAGAAGACTGCATTAAATCTTTGCAAATTAGGgttaaatatttcttgcaTCGAACCAACAGAAAAAACATGGAATTCTGATAAGAtgtataatgaaaaagaagtaATGAAATCCCCTGAAATCAATGCAATTAAAGCCACAAATATCAATGACAGGTTAATTccagaaaatgaaaatgtgtCAATTTTTGAAAACGTCTTAGGGccggaaaattattaa
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGNVKEVEQRVLRTATKTQRNLRSQQQVKGNEEAPKEQNSIQSTSGDNTENIQIVQSSETTPTRWLRSRQSTETTAANETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLVGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKKNDGLPQIVCLRCLGILEFFCDFYDRCHLVQQGFLQANQNATDEKFQQDSDAESDKENAIPSANEMKRKAKGLSPNSLKSTKNYLSENNTSCYRSGRREENVNLVNNSPINDVHSVTQTTVHLSNVISCEKISGSDASNLEENTNNVKHKNLNDNISKNTAIRTRSTNNLNLPQKDEEDININTHQPVGRRKGPKNKLKMREASFAAGSKKKRKVKEEKEKIIQNDMGKSDSLNSSLKSLDNKCKGSCLHIIYDNDKSNSVINNIETSPKPQVEQEAVEEQVAVVDTSSNIIYTKVNEPDIVYINNENCHTGDDLVISKLKEMESDKNTEKPGSYLNNTEDCSVKSKAISVIVKQEKGEGESTSPSENEKTNQLVLIPNEILMQKDKTVVKIHDQKGKKIDLTGISCSLVEESEKTENSETNLVTVQNIIKHSDVSNHPQTKIFAEQNRMTVIRSSQSNKLSNPKMMQEDSTEPCIAIDTIDQSTTNKIERNLSKRSLSRFSGDNFNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNSEEVQKNITIINKKNIRCNICGTLYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFACNLCEKRYVNAILLEEHINTHTGARPYKCKLCDFASSSRQILSYHNATHKPLKDISCKLCGKEFYSKSRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHRNIHMQDYVCNICGKHTKSRKALHNHQNVHAAAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCEKTFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKSLLSRRERTISFNNIAELTAELKTGNMTSSMSQVSLENQNNEILVVKTVEQEQKTALNLCKLGLNISCIEPTEKTWNSDKMYNEKEVMKSPEINAIKATNINDRLIPENENVSIFENVLGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00223349;
90% Identity: iTF_00228831;
80% Identity: -