Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020128.1:10590639-10600427[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0004 0.045 14.8 0.7 2 19 452 469 451 473 0.89

2 17 3.8e-05 0.0042 18.0 4.2 1 23 479 501 479 501 0.98

3 17 0.00036 0.04 14.9 0.1 3 23 509 530 507 530 0.94

4 17 0.45 50 5.2 1.8 1 23 537 560 537 560 0.98

5 17 0.0001 0.011 16.7 0.7 1 23 564 586 564 586 0.97

6 17 0.0025 0.28 12.3 0.5 1 23 592 614 592 614 0.98

7 17 0.00019 0.022 15.8 2.3 1 23 620 642 620 642 0.96

8 17 6.5e-06 0.00071 20.5 2.7 1 23 647 669 647 669 0.96

9 17 0.75 83 4.5 1.6 1 23 1277 1300 1277 1300 0.98

10 17 0.00019 0.021 15.8 0.3 1 23 1306 1328 1306 1328 0.97

11 17 0.93 1e+02 4.2 0.9 1 23 1334 1356 1334 1356 0.92

12 17 5e-05 0.0055 17.7 0.4 3 23 1364 1384 1362 1384 0.96

13 17 0.19 21 6.4 0.3 2 23 1391 1413 1390 1413 0.95

14 17 8.8e-05 0.0097 16.9 3.7 1 23 1417 1439 1417 1439 0.98

15 17 0.028 3 9.0 0.7 1 23 1444 1466 1444 1466 0.98

16 17 4.5e-08 5e-06 27.2 0.4 1 23 1472 1494 1472 1494 0.98

17 17 7.1e-05 0.0078 17.2 0.7 1 21 1499 1519 1499 1520 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0004	0.045	14.8	0.7	2	19	452	469	451	473	0.89
2	17	3.8e-05	0.0042	18.0	4.2	1	23	479	501	479	501	0.98
3	17	0.00036	0.04	14.9	0.1	3	23	509	530	507	530	0.94
4	17	0.45	50	5.2	1.8	1	23	537	560	537	560	0.98
5	17	0.0001	0.011	16.7	0.7	1	23	564	586	564	586	0.97
6	17	0.0025	0.28	12.3	0.5	1	23	592	614	592	614	0.98
7	17	0.00019	0.022	15.8	2.3	1	23	620	642	620	642	0.96
8	17	6.5e-06	0.00071	20.5	2.7	1	23	647	669	647	669	0.96
9	17	0.75	83	4.5	1.6	1	23	1277	1300	1277	1300	0.98
10	17	0.00019	0.021	15.8	0.3	1	23	1306	1328	1306	1328	0.97
11	17	0.93	1e+02	4.2	0.9	1	23	1334	1356	1334	1356	0.92
12	17	5e-05	0.0055	17.7	0.4	3	23	1364	1384	1362	1384	0.96
13	17	0.19	21	6.4	0.3	2	23	1391	1413	1390	1413	0.95
14	17	8.8e-05	0.0097	16.9	3.7	1	23	1417	1439	1417	1439	0.98
15	17	0.028	3	9.0	0.7	1	23	1444	1466	1444	1466	0.98
16	17	4.5e-08	5e-06	27.2	0.4	1	23	1472	1494	1472	1494	0.98
17	17	7.1e-05	0.0078	17.2	0.7	1	21	1499	1519	1499	1520	0.94

Sequence Information

Coding Sequence: ATGGAGTTAGGGGAGGGAGACGCGCAAATTTGTCGACTTTGCGGCCAATGCGAGAGTATATACATCGACGTTTTCGGTGAGGAAGGCACCAAACGATTTTTAGGATTAAAGATCCATACAAAAATCAACATTCTGATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACAACACCAAGTACATCAAcaaacaacaacaacaatgaaACCAACAAAAATCTTAATTCTCCTAATGATGGAAGTGTTAAAGAAGTAGAGCAACGTGTTTTAAGAACAGCTACAAAGACTCAGAGAAACTTGAGGAGTCAACAACAAGTAAAAGGCAATGAAGAAGCTCCAAAAGAGCAGAATAGTATTCAAAGTACAAGTGGAGACAATACAGAGAATATACAAATTGTTCAAAGTTCTGAAACAACTCCCACGCGATGGCTTAGAAGTAGACAAAGTACAGAAACAACTGCTGGAAATGAAACAGTGACTGATACGCCAATCGCAAATAGACTTAGAAGTCATGATAATACTGCCACAGAAATAACTGTTAGTCCACATAATAGCCCTAATGAAATTGGTGAGAAACTAGTTGGGAAGCAGCAAGATCCACACACTATACAAATTCCAACATCAGCATTAAATAAACTTCTAAGTATCGTGTCAAACTCTCCAAACATCGAAGTTTCTGTAAAAGAATCCCGAAATCAAAGCAGCGACATTGAAGATATTAGTTTTACTGTAGAATTATGTAAAAAGGAAAGTGACGATGTAGCTACTGTTCGAGCGCGAGTATTTCCAGATCAAGGTTCCTGTTTGGTGGACAAGGCAATCGTTGGTCTTTTACAAAATCAAAGTTGCGTAGAAgtaaatagtataataaacaCCATTATCAACAGTAGTCTGAAGAATGGCAGTTCAACGAAATTGAAGGATTCTGCTGAATTCGAACAGAAATGGCAGGCTTCTCAGAACCCAGAAGAACTTTTCAGGATCGACGGAGAAGAAATTCGTGTCGACGATAACGTCGAACATGTCGTTACGGATAATCAAAACGGCTACTCTTGTAAATTGTGTTGTAAGTTCTATGAACGTAAGGACAAATGTATGGTTCACGTGAAAACCCACCTCGGTATTAAGCAGTATACTTGCATTTTGTGCAACGCTAAATTCGTATGCAAGTCCGATGTAATGAAGCATATTCGATGCTCACATACTAATCCTAGACCGATACAATGCCCAAAATGTCCAAAAAGGTTCAagtcgaaattttatttaatggaGCACGACAACGTGCACAAAGGTGTGAGACCTTATTCTTGTACAGACTGCGGTCAAAGTTATCATCACAAAGTGTCTCTACAAATCCACATGAAATCACACTTACCTCCACAGAACTTAGCTTGCGAATATTGTGGCAAAGTGTTCCCGTACCGTACGAGATTGTTAAGTCATATAGCTAGcgtacatttaaaaaatcgtcGCAATTTCAGGTGTCGATTCTGTTACAACCTGTATTCAAGTCTTTCAGTTTTGAATGAACATATTAAAACGCGTCACGCGACTACATACACTTGTGAAGTTTGTAGTAAAACGTTCAAAGTCGCGTCCAAGTATAAGGCTCACGTGTTACAACACTCAAATCCTAAGCCGTTCGTGTGTAACGTTTGTAACAATAGATACGCCTCCAAAGCATTCCTAAACGAACATCTATTGAAACACGAAGGGCTGAGGAAACATATTTGCCAAAAGTGTGGTGCAAGATTCGCACAAGCTAGTCATCTGGCTGCACACCGACACGTGCACGGTGAAAAAAAGCATGCCTGTCCGGAATGCGGACGAAAGTTTAATAGGCGTGATAACATGAAGGTACATAGAAAAAGACActttgaagaaaaaaagactAGTAATAGCAAACAGAAGAACGCATCTAGTGGCGACataaagaaaaacgatGGGCTGCCGCAGATTGTTTGTTTGCGATGTTTGGGCATCCTGGAATTCATCTGCGACTTTTATGATCGCTGTCATCTGGTACAACAGGGGTTCTTGCAGGCTAATCAAAATGCAACAGATGAGAAGTTCCAGCAAGATAGCGATGCTGAATCTGATAAGGAGAACGCTATTCCTTCTGCGAATGAGATGAAACGGAAAGCTAAGGCATTATCACCTGACAGTCTAAAGAGTACAAAAAATTATCTGTCCGAAAATAATACATCATGCTACAAGactggaagaaaaaaagaaaacgtcaATCTCGTAAATAATTCCCCTATTAATGATGTTCACTCGGTTGCACAAACTACGGTGCATTTAAGCAATGTAATTTCATGTGAAAAAATATCGGGGAGTGATGCTAGTAATTTAGAAGAGAATACaaacaatttaaaacataaaaatttaaacgacAATATATCAAAAAAGACTGCAATTCGTACAAGGTCAATGAATAACTTGAACTCGCCGCAAAAAGATGAGGAGgacattaatataaatacacatCAACCTGTAGGACGTAGAAAAGGACGGAAAAACAAATTGAAGAAGATGAAAGGAGCCAGTTTCTCAGCAGacaacagaaaaaagaaaaaagtggaagaagaagaagaaaagataatCCAAAATGATATGGGTAAGAGTGATAGTTTAAATAGTAGTTTAAAAAGTTTGGATAACAAATGCAAAAGAAACTGCCTGCATGTTATTTATGATAATGATAAGTCCAATAGTGtgattaataatattgaaacCTCCCCCAAACCACAAGTTGAGCAAGAGGCAGTGAAGGAACAGGTGGCAGTGGTGGACACATcctcaaatataatttataccaAAGTTAATGAACCTGATAttgtatacataaataatgaaaattatcatACTGATGATGAttcagtaattaataaattagaagaaatggaatctgataaaaacacagaaaaacCTGGCAGCTATTTGAACAATACAGAAGATTGTTCTGTAAAAAGTAAAGCAGTATCAGTTATTGTAAAGCAAGAGAAAGGAGAAGCAGAAAGTACTCCTCCtagaaagaatgaaaagacAAATCAGATTGTTTCGATTCCTAATGAGATACTAATGATGATGGATAAAATTATAGTGAAGAATCATGatcaaaaaggaaaaaagatagaTTTAACGCGGATATCTTGTTCATTGGTAGAGGAATCTGAAAAAACTGAAAATAGTGAGACTAATTTAGTAAcagtacaaaatattattaagcaTTCTGATGTTTCTAATAATCCgcaatcaaaaatatttacagaacAAAATCGTGTGACCGTTATAAGGTCTTCGCGATCTAATGAATTATCAAATCCAAAGATGATGCAGGAAGATTCCACAAAACCGTGCATTGCAATAGATGTAATAGACCAAAGTACTACAAATAAGATAGAATGTAACCTCAGCAAACGTTCATTATCTCGATTCAATGAAgatagttttaataaaattaaaagtaaagatAGATCGTTTGGAAAAATCTCCGAATTGATAAGTGACGAACAAAAACAAGCTATTGAGACTTATTACACGGTGGACATGTCGATAGTAAATTTGGAAGAAGTACAGAAGAACataacgataattaataaaaagaatatacgCTGCAATATTTGTGGCACTCTTTATCTCAGGATGGATAAGTGTCAGGTACATATTTGGGGACATTTACAAATGAAGCCCTATCAATGCAAAGCTTGTGACTTTGCCACAGTTACTGTTAGCAATGTTCGATGCCATATCAGAAAAagtcatttaaaaattaaaccaTTCGCGTGCCATCTGTGTGAAAAACGATATGTAAATGCCATTTTATTAGAAGAGCATATTAATACTCATACAGGTGCCCGTCCATACAAGTGCAAGCTCTGTGATTTTGCAAGTTCCAGtagacaaatattaaattatcataatGCCACTCATAAACCATTGAAGGATATTAATTGTAAACTTTGTGGAAAAGAGTTTTATTCAAAAAACAGATTGCGTGCACACATGATTGTACACAACAAAGATAAAGCTGTTATGTGTAAACTATGTTCTGCTTATTTATCTAATGCAGAAGCACTAGAAACGCATCATAGAAACATTCACATGCAAGATTATGTCTGTAACATATGCGGCAAACACACTAAGTCAAGAAAAGCTTTACACAATCATCAAAatGTTCACGCTGCTGGAAAATACAAATGTACTCTATGCCCAAATGTGTATAAGAGTAGTCAAATACTAAAAGAACATCTTTTAAAACATGAAGGTATTAGAAAGTATAAATGTAATGTCTGTGGAAAGACGTTTGGTCAGCAATCTCATTTAGCTGCTCACATGGCAGTACATAGCAAAATCAgATTTCATTGTCCTGGATGTGACAAACCTTTCAATCGTCTGGACAATATGAAGATACATACTAAACGATGTAAACCATTTTTGGCAAATCCAGAGCTAAAAAGTCTTTTAAGTAAGAGAGAAAGGACAATATCGTTCAATAACATAGCAGAATTAACTGCAGAACTAAAGACTGGTAATATGACAAGTTCTATGTCTCAAGTTTCTCTAGAAAACCAGAATGATGAAATATTAGTAGTAAAGACTGTGGAGCAAGAACAGAAGACTGCATTAAATCTTTGCAAATTAGGGCTAAATATTTCTTGCATTGAACCAACAGAAAAAACATGGAATTCTGATAAGATGTATAATGAAAAAGAAGTAATGAAATCCTCTGAAATCAATGCAATTAAAGTCACAAATATCAATGACAGGTTAATTccagaaaatgaaaatgcgtcaatttttgaaaatgtcTTAGGGccagaaaattattaa
Protein Sequence: MELGEGDAQICRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTTPSTSTNNNNNETNKNLNSPNDGSVKEVEQRVLRTATKTQRNLRSQQQVKGNEEAPKEQNSIQSTSGDNTENIQIVQSSETTPTRWLRSRQSTETTAGNETVTDTPIANRLRSHDNTATEITVSPHNSPNEIGEKLVGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQSSDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLKDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHVVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKVHRKRHFEEKKTSNSKQKNASSGDIKKNDGLPQIVCLRCLGILEFICDFYDRCHLVQQGFLQANQNATDEKFQQDSDAESDKENAIPSANEMKRKAKALSPDSLKSTKNYLSENNTSCYKTGRKKENVNLVNNSPINDVHSVAQTTVHLSNVISCEKISGSDASNLEENTNNLKHKNLNDNISKKTAIRTRSMNNLNSPQKDEEDININTHQPVGRRKGRKNKLKKMKGASFSADNRKKKKVEEEEEKIIQNDMGKSDSLNSSLKSLDNKCKRNCLHVIYDNDKSNSVINNIETSPKPQVEQEAVKEQVAVVDTSSNIIYTKVNEPDIVYINNENYHTDDDSVINKLEEMESDKNTEKPGSYLNNTEDCSVKSKAVSVIVKQEKGEAESTPPRKNEKTNQIVSIPNEILMMMDKIIVKNHDQKGKKIDLTRISCSLVEESEKTENSETNLVTVQNIIKHSDVSNNPQSKIFTEQNRVTVIRSSRSNELSNPKMMQEDSTKPCIAIDVIDQSTTNKIECNLSKRSLSRFNEDSFNKIKSKDRSFGKISELISDEQKQAIETYYTVDMSIVNLEEVQKNITIINKKNIRCNICGTLYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFACHLCEKRYVNAILLEEHINTHTGARPYKCKLCDFASSSRQILNYHNATHKPLKDINCKLCGKEFYSKNRLRAHMIVHNKDKAVMCKLCSAYLSNAEALETHHRNIHMQDYVCNICGKHTKSRKALHNHQNVHAAGKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCGKTFGQQSHLAAHMAVHSKIRFHCPGCDKPFNRLDNMKIHTKRCKPFLANPELKSLLSKRERTISFNNIAELTAELKTGNMTSSMSQVSLENQNDEILVVKTVEQEQKTALNLCKLGLNISCIEPTEKTWNSDKMYNEKEVMKSSEINAIKVTNINDRLIPENENASIFENVLGPENY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224042; iTF_00222679; iTF_00218584; iTF_00228831; iTF_00230828;
90% Identity: iTF_00228831;
80% Identity: -