Bpic012271.1
Basic Information
- Insect
- Bombus picipes
- Gene Symbol
- -
- Assembly
- GCA_014737485.1
- Location
- JACXIP010000079.1:113474-116449[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 2.2e+02 2.8 0.2 2 19 118 135 117 138 0.88 2 13 0.0054 0.54 11.0 1.0 1 22 144 165 144 165 0.95 3 13 0.0082 0.83 10.4 6.7 1 23 175 198 175 198 0.93 4 13 3.1e-06 0.00032 21.2 3.5 2 23 555 577 554 577 0.96 5 13 1.5 1.5e+02 3.3 0.3 5 23 584 603 583 603 0.94 6 13 0.00065 0.065 13.9 1.2 2 23 610 631 610 631 0.96 7 13 0.93 94 4.0 3.7 1 20 658 677 658 679 0.89 8 13 0.004 0.4 11.4 2.9 1 22 780 801 780 801 0.96 9 13 0.0045 0.45 11.3 1.8 2 23 809 831 809 831 0.93 10 13 0.012 1.2 9.9 4.0 1 23 841 864 841 864 0.95 11 13 4.4 4.4e+02 1.9 0.1 3 19 885 901 884 903 0.88 12 13 0.14 14 6.6 2.1 1 23 911 934 911 934 0.87 13 13 0.0014 0.14 12.8 4.9 1 23 945 968 945 968 0.94
Sequence Information
- Coding Sequence
- ATGATATTCATGGCACGATTGACTTCAATTATTAGACTAGGACTATTCCATAGATTTTTCGTTTCTTCGGATGTTACATTAGGTTTGTATATTTTTTTTCAGCTTTCTGAATATGCAATAACAATAAAAGAAGAGCCAATCTATCCAGAGGTCTGCGATGATTTGTCGCCAGTTGATACGAATACAGGGAATAAAAATGAAACAGCGACGTTTAAAGGTGAATCTTCGGACGACGTTTATTGTAAAAATGAAGAATCCGCGTTTCCTCAAGAAAGTACGTATTTAGAAAATAACAAATCGGATTCTGATAAACGAAAAAGTAAACGTAAAGTACCTTCAAACAACGGAATAAGTTGCAACGTTTGTTTGTTAACTTTTCAAGCTAAACATTTATTGGAACTGCATAATAAATTATATAGCTGTAATGTATTTAAGTGTAATAATTGTACTGCGATCTTCACTATGCATATTTCGTTAATACGTCATTTAAAGAAGCAATGTTGTACGAAGAAATTATCTGGATATAGATGTAATTTTTGTAACCGAATGTTTTCCTATAAAAGACATGTTCAATCTCATTTATTCCATGCGCATGGGAACGCAATATTTTCTGGCGAAAGCAAAATCACGGAAACATCTCTTGAAACGTCAGGAAAGTCGAATCATTCGGATGGTATTGTCATGGCAGAATCAAATACTTCACACAGACCCTGCCCAAAAAACGTAAATAGCTCAATAAATATATCTCTGATACTATCTAATGGTTCAAACAATACACCCACCAAAGGTTCAAGCAGCAATATCAAGTCCACGCATCTGAAATGGTTAAACGATTCGCGTGGTACACCTTCGAAAAGGATGAAGCAGACTGTCCTTACAGACTTCATATCGCCGTACAAAGACAAACCGAATGACAAATGGGTTTGCCCGGAAAATTTTATCGATGCGGAGAATATTCCTGTTACTGCGACTATTATTCCAACTTCAACGCTCGAGACATTTAGTAACAAGACATCAACGGCTGCAGAAGTTATTCAGATGTCTACTTCTGTTAAGCGAATCGAATCTCCTGTTAAGAAAAGAGCACCTGTTCAAACTCATGTGAATTTAAAAACAATGATATCTTTATTCAGGAACGAAATAAAAGCTGAATCTGATAGCTCTAATACCTCGCACAATATGTCTTACAATTTTAGGCCAACGAAGACATGTTCTTCTTTATATGATTCTTACGATTTATTGGAGTTTAAGACCTTTGGAAGATCAAGACAATCTTTTAAAAGAAACAAGTCCCCCTATATATTTAACCAAAGTAGAAGATCTGCACCTGAAGCTAAGTGTAAAGAATGTGTGGTCCGCTTGGAGAAATGCGACAAATTCTTGGAGCCTACTAGTTTTGTGTCAAACGAAGACGAAGATGAAAACGAAGACGAAGATGAAAACGAAGACGCTTTCAAACAAGCAGTATCGAAAAATGTGAAAGAGGAATTTGAAGGTTTTCGTGGAACAAGCTCGACATGTAACTTGCCTTTGGAAGCTGACACGATTGCGTCAAAGCGATTCAATGAATTTGTAAAATCTTTCGTTGATACATTAATCGTACCTCAACAAGAATCGGTTGAATTTCGGAAGAACTTTAAAGTCTATCAGCAGAAAATAATTCAATGTCATATTTGTAAAAAATCGTTTTTTTCGAAGGAGAACCTGCGCGAGCACATGAAATTGTTCCATACGATTTACATTTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTCCACCGGTTGATGTTGAAATAAATTGCAATGCATTCAAGAAACAACACAAATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACACGAGAATGTATGTCGTCGAATGCAAGTGTTAAGAAATAAACAACGTGTACCTCGTGTAAACCATTTGTCTCGGTCCTTGAAAGAACCAAGTGACATGGAACTCGGCATAGTACAGTCGCCTGATTTGGAACAAACGTCGGATGTTTCGGGTGGCACGACAAGATCTTTGAAAAATTATTTGACTCCGAGTACGCTTATTACGGATGATACTTTCTCTTCGTTATTCGATACAGCTGCAAAGCGCAGAAGATTACTTAATGGGATTGCATGCGTAAAGGGTCACCAAGCGGACAAGATGAACAGAACAAAGTTTCCTTGCACTACTTGTGGAACACAATTCCAAACATTTAAAAATTTGTGCACACACGAGCGCACCTATTGTCAAACAGCCACAGAAAAGTGCAACATTTGTAACACGATGTTTTCCACTAAAAGATTCTTACAGTTTCACATGCTTGCTACTCATGCGCCTTCGTGTTCGGTGAACTACAAATTCTTTTGTAAGTTTTGCAATCAAGGATTTGTTAAGAAATCGAGACTTCAAATTCACGAACGACACTTGCATATTGGGCAAGATTCTAGGCTGGTGCTGAATTCCGATTGCGTTGTGGAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTAGTCGAGCATAACGCGTATTATTACAAGGGCAATGATTTTTTATGCGCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTTATCATCACAACAAGTTGGAGCATTATCCGGACGAACTATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATCTCCACGCACATAAGCTACACGTTCATTCGCACGATTCGCCCGCTGACGAGGCGCGCGACCGCGATACACCGGATCAGACTTTTCGCGTGTGTTCATGA
- Protein Sequence
- MIFMARLTSIIRLGLFHRFFVSSDVTLGLYIFFQLSEYAITIKEEPIYPEVCDDLSPVDTNTGNKNETATFKGESSDDVYCKNEESAFPQESTYLENNKSDSDKRKSKRKVPSNNGISCNVCLLTFQAKHLLELHNKLYSCNVFKCNNCTAIFTMHISLIRHLKKQCCTKKLSGYRCNFCNRMFSYKRHVQSHLFHAHGNAIFSGESKITETSLETSGKSNHSDGIVMAESNTSHRPCPKNVNSSINISLILSNGSNNTPTKGSSSNIKSTHLKWLNDSRGTPSKRMKQTVLTDFISPYKDKPNDKWVCPENFIDAENIPVTATIIPTSTLETFSNKTSTAAEVIQMSTSVKRIESPVKKRAPVQTHVNLKTMISLFRNEIKAESDSSNTSHNMSYNFRPTKTCSSLYDSYDLLEFKTFGRSRQSFKRNKSPYIFNQSRRSAPEAKCKECVVRLEKCDKFLEPTSFVSNEDEDENEDEDENEDAFKQAVSKNVKEEFEGFRGTSSTCNLPLEADTIASKRFNEFVKSFVDTLIVPQQESVEFRKNFKVYQQKIIQCHICKKSFFSKENLREHMKLFHTIYISSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDAPPVDVEINCNAFKKQHKCKGCRKRFWLYSCLKQHENVCRRMQVLRNKQRVPRVNHLSRSLKEPSDMELGIVQSPDLEQTSDVSGGTTRSLKNYLTPSTLITDDTFSSLFDTAAKRRRLLNGIACVKGHQADKMNRTKFPCTTCGTQFQTFKNLCTHERTYCQTATEKCNICNTMFSTKRFLQFHMLATHAPSCSVNYKFFCKFCNQGFVKKSRLQIHERHLHIGQDSRLVLNSDCVVEDKPICNICHLLFESYERLVEHNAYYYKGNDFLCAICGKSFQGMYKFYHHNKLEHYPDELWKLYPYKCDTCNEGFSYESHLHAHKLHVHSHDSPADEARDRDTPDQTFRVCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00214629; iTF_00214627; iTF_00232216; iTF_00232219; iTF_00227525; iTF_00226193; iTF_00226164; iTF_00232854; iTF_00221504; iTF_00215304; iTF_00232843; iTF_00226860; iTF_00222786; iTF_00227527; iTF_00232846; iTF_00232239; iTF_00231601; iTF_00215980; iTF_00228259; iTF_00225525; iTF_00215287;
- 90% Identity
- -
- 80% Identity
- -