Basic Information

Insect: Bombus sibiricus
Gene Symbol: -
Assembly: GCA_014737505.1
Location: JACXIM010000009.1:2234583-2239632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.13 15 6.6 0.4 2 19 99 116 98 119 0.92

2 13 0.0026 0.29 12.1 0.8 1 22 125 146 125 146 0.96

3 13 0.018 2 9.4 7.9 1 23 156 179 156 179 0.93

4 13 2.1e-06 0.00024 21.8 3.9 1 23 572 595 572 595 0.97

5 13 1.2 1.4e+02 3.6 0.3 5 23 602 621 601 621 0.94

6 13 0.00067 0.075 13.9 1.2 2 23 628 649 628 649 0.96

7 13 1.4 1.5e+02 3.5 3.3 1 20 676 695 676 697 0.89

8 13 0.00066 0.074 13.9 2.0 1 22 799 820 799 820 0.96

9 13 3.9e-05 0.0044 17.8 1.0 2 23 828 850 828 850 0.95

10 13 0.067 7.5 7.6 4.5 1 23 860 883 860 883 0.95

11 13 9.7 1.1e+03 0.8 0.2 3 19 904 920 903 922 0.81

12 13 0.18 20 6.2 4.5 1 23 930 953 930 953 0.88

13 13 0.036 4 8.4 5.9 1 23 964 987 964 987 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.13	15	6.6	0.4	2	19	99	116	98	119	0.92
2	13	0.0026	0.29	12.1	0.8	1	22	125	146	125	146	0.96
3	13	0.018	2	9.4	7.9	1	23	156	179	156	179	0.93
4	13	2.1e-06	0.00024	21.8	3.9	1	23	572	595	572	595	0.97
5	13	1.2	1.4e+02	3.6	0.3	5	23	602	621	601	621	0.94
6	13	0.00067	0.075	13.9	1.2	2	23	628	649	628	649	0.96
7	13	1.4	1.5e+02	3.5	3.3	1	20	676	695	676	697	0.89
8	13	0.00066	0.074	13.9	2.0	1	22	799	820	799	820	0.96
9	13	3.9e-05	0.0044	17.8	1.0	2	23	828	850	828	850	0.95
10	13	0.067	7.5	7.6	4.5	1	23	860	883	860	883	0.95
11	13	9.7	1.1e+03	0.8	0.2	3	19	904	920	903	922	0.81
12	13	0.18	20	6.2	4.5	1	23	930	953	930	953	0.88
13	13	0.036	4	8.4	5.9	1	23	964	987	964	987	0.94

Sequence Information

Coding Sequence: ATGGAATTTTATCGCTTCGACCATCTGCGTGCCAACGCTCTGATGCCTTCTGAATATGCAGTACCAATAAAGGAAGAGCCAATCGATCCAGAGATCTGCGATGATTTATCGCCAGTTGATACGAATACAGAGAATGAAAATGAAACAGCGACGTTTGAAGGTGAATCTTTGGATGGCGTTTATTGTAGAAATCGAGAATCCGCGTTTCCTCAAGAAAGTACATATTTAGAAAATAACAAATCGGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAACAGAATAAGTTGCAATGTTTGTTTGTTAACTTTTCAAACTAAACATTTATTGGAACTGCATAATAAATTATATACCTGTAATGTATTCAAGTGTAATAATTGCACTGCGATGTTCAGTATGCATATTTCGTTAATACGTCATTTAAAGATGCGAGGTTGTACGAAACAATGGCCTGGATATAGATGTAATTTTTGTAACCGAAGGTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATATGCATGGGAATGCAATATTTTCTGGTGAAAGCAAAATTACGAAAACGTTTCCTGAATCGTTAGGAAAGTCAAATCATTCGGATGGTATAGTCATGGCAGAATCAAATACTTCACACAGTCCCTTCCAAAAAAACGTAAATACCTCAATAAATATGTCTCCGAAACTATCTAATAGTTCAAACAATACACCCACCAAGGGTTCGAGCAGCAAGATCAAGTCTACGCATCCGAAATGGTTAAACGATTCGTATGGTACACCTTCGAAAAGGATGAAACAGACGGTCCTTACAGACTTCATATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGGAAAAAGTTATCGATACGGAGAATATTCCTGTTACTGCGACTATTATTCCAACTTCAACGCTCGAGACATTTAGTAACATGACATCAACGGCTTCAGAAGTTATCCAGATGTCTACTCCTGTTAAACGAATCGAATCTTCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCCAAAACAATGATATCCTTATTAAGGAACGAAATAAAAGCTAAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCAGTAAAAAGATGTTCTTCTTCTTTATATGATTTTTACGATTTATTGGAGTTTGAGACCTTTGGAAGATCAAGACAATCTTTTAAAAGAAACAAGTCCCCCTATATGTTTAACCAAAGTGAAAGATCTGCACCTGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGCCGACTAGTTTTGTATCAAACGGAGACGAAGACGAAAACGAAGACGAAGACGAAGACGAAGACGAACACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAAAATGAAAACGAAAACGAAAACGAAGACGAAAACGAGGACGGTTTCAAACAAGCAGTATCGAAAAATGTGAAAGAGGAATTTGAAGGTTTTCGTGAGACAAGCTCGGCAAGTAACTTGCCTTTGGAAGCTGGCACGATTGCATCAAAGCGATTCAATAAATTTGTAAAATCTTTCGTTGATAGATTAATCGTACCTCAACAAGAATCGGTTGAGTTTAAGAAGAACTTTAAGGTCAATCAGCAGAAAATATTTCAATGTCATATTTGTAAAAAATCGTTTTCTTTGAAAGTGAACCTGCGCGAGCACATGAAATTGTTCCATGCGATTTACATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAAATCACTATCTACGTCAGCATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTCTACCGGTTGATGTTGAAATAAATTGCAACGTATTCAAGAAACAACACAAATGCCAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACATGAGAATGTATGTCGTCGAATGAAAGTCTTAATACATAAACAACGTGTACCTCGTGTAAACCATTTGTCTCGGTCCTTGAAGGAACCAAGTGACATGGAACTCGGCATAGTACAGTCACCTGATTTGGAACAAATGTCGGATGTTCCGGGTGGGACGACAAGACCTTTGGAAAATAATTTGGCTCCGAGTACGTTTATTACGGATGATAATACTCTCTCTTCGTCATTCGATACAGATGCAAAGAACAAAAGGCTATTTAATGGGATTGCATGCGTAAAGGGTTACCAAGCGGACAAGATGAGCAGAACAAAGTTTCCTTGCACTACTTGTGGGACACAATTCAGAACATTTCAAAATTTGTGCATACACGAGCGCACCTATTGCCAAACAGCCACCGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTATTACAGCTTCACATGCTTGCTACCCATACGCCTTCGTGCTCGGTGTACTACAAATTCTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATCGAAAGTTCAAATTCACGAACGGCACTTCCATATTGGGCAGAATCCTAGACTGGTGCTGAATTCCGATTGCGTTTTGAAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTTGTCGAGCATAACATGTATTATTACAAGGGCAAAGATTTTTTATGCTCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTCATCATCACAACAAGTTGGATCATTATCCGGACGAACTATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAAACACATTTCCACGCACATAAGCTACACGTTCATTCGCACGATTCGCCCGCTGACGAAGCGCTCGACCGCGATACATCGGATCAGACTTTTCGCACGTGCTCATGA
Protein Sequence: MEFYRFDHLRANALMPSEYAVPIKEEPIDPEICDDLSPVDTNTENENETATFEGESLDGVYCRNRESAFPQESTYLENNKSDPDKRKSKHKVPSNNRISCNVCLLTFQTKHLLELHNKLYTCNVFKCNNCTAMFSMHISLIRHLKMRGCTKQWPGYRCNFCNRRFSYKRHVQSHLFHMHGNAIFSGESKITKTFPESLGKSNHSDGIVMAESNTSHSPFQKNVNTSINMSPKLSNSSNNTPTKGSSSKIKSTHPKWLNDSYGTPSKRMKQTVLTDFISLYKDKPNDKWVSPEKVIDTENIPVTATIIPTSTLETFSNMTSTASEVIQMSTPVKRIESSVRKRPFVQIHVNSKTMISLLRNEIKAKSESSNTSHNMSYNLRPVKRCSSSLYDFYDLLEFETFGRSRQSFKRNKSPYMFNQSERSAPEAKCKECVVRLEKCDKFLEPTSFVSNGDEDENEDEDEDEDEHENENENENENENENENENENENENENENEDENEDGFKQAVSKNVKEEFEGFRETSSASNLPLEAGTIASKRFNKFVKSFVDRLIVPQQESVEFKKNFKVNQQKIFQCHICKKSFSLKVNLREHMKLFHAIYMSSICNARYTSMNKLLNHYLRQHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDALPVDVEINCNVFKKQHKCQGCRKRFWLYSCLKQHENVCRRMKVLIHKQRVPRVNHLSRSLKEPSDMELGIVQSPDLEQMSDVPGGTTRPLENNLAPSTFITDDNTLSSSFDTDAKNKRLFNGIACVKGYQADKMSRTKFPCTTCGTQFRTFQNLCIHERTYCQTATEKCNVCNTMFSTKRLLQLHMLATHTPSCSVYYKFFCKFCNQGFVKKSKVQIHERHFHIGQNPRLVLNSDCVLKDKPICNICHLLFESYERFVEHNMYYYKGKDFLCSICGKSFQGMYKFHHHNKLDHYPDELWKLYPYKCDTCNEGFSYETHFHAHKLHVHSHDSPADEALDRDTSDQTFRTCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00225500;
90% Identity: iTF_00221511;
80% Identity: -