Bpol002489.1
Basic Information
- Insect
- Bombus polaris
- Gene Symbol
- -
- Assembly
- GCA_014737335.1
- Location
- JACXIO010000265.1:22738-26687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.056 5.7 7.9 0.2 2 20 90 108 89 110 0.92 2 13 0.0021 0.21 12.4 0.9 1 22 116 137 116 137 0.95 3 13 0.011 1.1 10.1 7.3 1 23 147 170 147 170 0.93 4 13 4.3e-06 0.00044 20.8 2.0 1 23 525 548 525 548 0.97 5 13 1.6 1.7e+02 3.3 0.4 5 23 555 574 554 574 0.94 6 13 0.00065 0.066 14.0 1.2 2 23 581 602 581 602 0.96 7 13 0.9 92 4.1 3.6 1 20 629 648 629 650 0.89 8 13 0.0058 0.59 11.0 1.5 1 21 751 771 751 772 0.95 9 13 0.0023 0.23 12.2 1.3 2 23 780 802 780 802 0.93 10 13 0.00046 0.047 14.4 3.7 1 23 812 835 812 835 0.95 11 13 2.6 2.7e+02 2.6 0.2 2 19 855 872 854 875 0.88 12 13 2.6 2.6e+02 2.6 1.8 1 23 882 905 882 905 0.85 13 13 0.0081 0.83 10.5 5.8 1 23 916 939 916 939 0.94
Sequence Information
- Coding Sequence
- ATGAAAAATACTGCTGCTCCTTCTGAATATACAATAAGGATAAAGGAAGAGCCAATCGATCCAGAGATCTGCGATGATTTGTCACCAATTGATACGAATACAGGGAACGAAAATGAAACGGCGACGTTTAAAGGTGAATCTTCGGATGTCGTTTATTTTAAAAATGAGGAATCCGCGTTTCCTCAAGAAACTACGTATTTAGAAAATACCAAATCGGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAAAAGAATAAGTTGCAATGTTTGTTTGTTAACTTTTCAAACTAAAGATTTATTGAAACTGCATAATAAATTATATAGCTGTAATGTATTTAAGTGTAATAATTGCAATGCGATCTTCACTATGCATATTTCGTTGATACGTCATTTAAAGAAGCGATGTTGTACGAAAAAATTGTCTGGATATAGATGTAATTTCTGTAACCGAAGGTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATGCGCATGGGAACGCGATATTTTCTGGTGAAAGCAAAATTATGAAAACATCTCTTGAGTCGTTAGGAAAGTCGAATAATTCGGATGGTATAATCATGACAGAATTAAATACTTCACACAGTCCCTGCGCAAAAAACGTAAATAGCTCAATAAATATATCTTTGAAATTATCTAATAGTTCAAATAATACACCCACCGAGGGTTCCAGCAGCAATATCAATTCTACGCATCCGAAATGGTTAAACGATTCGTATGGTACTCCTTCGAAAAGGATGAAGCAGACCGTCCTTACAGACTTCATATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGGAAAAAGTTATCGATACGGAGAATATTCCTGTTACTGCGACTATTATTCCAACTTCAACGCTCGAGACATTGGGTAACAAGACATCAACGGCTGCAGAAGTTAGAGATGCAGAAGTTCAGATGTCTACTTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAGACCATTTGTTCAAATTTATATGAATTTAAAAACAATGATATCTTTATTAAGAAACGAAATAAAAGCTGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTATAACCTTAGACCATTAAAAAGACGTTCTTCTTCTTTATATGATTTTTGCGATTTATTGGAGTTTGAGACCTTTGGAAGATCAAGACAATCTTTTAAAAGAAACAAGTCCCCCTATATATTTAACCAAAGTAGAAGATCTGCACTTGAAACTAAGTATAAAGAATGTGTGGTTCGTTTGGAGAAATGCGACATATTCTTGGAGCCTACTAGTTTTGTGTCAAACGAAGACGAAGACGAAAACGAAGACGCTTTCAAGGAAGCAGTATCGAAATATGTGAAAGAAGAATTTGAAGGTTTTCGTGAAACAAGCTCGGCATGTAACTTATCTTTGAAAGCTGACACGATTGCGTCAAAGCGATTCAATGAATTTGTAAAATCTTTCGCTGATAGATTAATCGTACCTCAACAAGAATTGTTTGAATTTCAGAAGAACTTTAAGGTCAATCAGCAGAAAATATTTCAATGTCGTATTTGTAAAAAATCGTTTTCTTTGAAGGAGAACCTGCGCGAGCATATAAAATTGTTCCATACGATTTACATGTCGAGTATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCGGCATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACATCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTCCACCGGTTGATGTTGAAATAAATTGCAATGCATTCAAGAAACAACACAAATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACATGAGAATATATGTCGTCGAATGAAAGTCTTAATAAATAAACAACGTGTACCTTGTGTAAACCATTTGTCTTGGTCATTGAAAGAACCAAGTGACATGGAACTCAGCATAGTACAGTCACATGATTTGGAACAAATGTTGGATGTTTCGAGTGGGACGACAAGATCTTTGGAAAATTATTTGGCTCCGAGTACGCTTACTACGGATGATACTTTCTCTTCGTCATTCGATACAGCTGCAAAGAACAAAAGGTTACTTAATGGGATTGCATGCGTAAAGGGTCACCAAGCGGACAAGATGAACAGAACAAAGTTTCCTTGCACTACTTGTGGGACACAATTCCAAAAATTTAAAAATTTGTGCATACACGTACGCATCTATTGCCAAACAGCCACAGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTATTACAGTTTCACATGCTTGCTACTCATACGCCTTCGTGCTCGGTGAACTACAAATTCTTTTGTAAGTTTTGTAATCAAGGATTTGTTAAGAAATCGAATCTTCAAATTCACGAACGACACTTGCATATTGGGCAGGATTCTAGACTGGCGTTGAATTCCGATTGCGTTGTGAAGGATAAACTAACCTGTAATGTATGCCATTTGTTATTCGAATCCTACGAACGTTTAGTTGAGCATAACATGTATTATTACAAGGGCAATGATTTTTTATGCGCAATATGTGGTAAGTTGTTTCAAGGAATGTACAAGTTTTATCATCACAACAAGTTGGAGCATTATCCGAACGAACCATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATTTCCACGCACATAAGCTACACGTTCATTCGCACGATTCGCCCGTTGACGAGGCGCGCGACCGCGATACATCGGATCAGACTTTTCGCATGTGTTCATAA
- Protein Sequence
- MKNTAAPSEYTIRIKEEPIDPEICDDLSPIDTNTGNENETATFKGESSDVVYFKNEESAFPQETTYLENTKSDPDKRKSKHKVPSNKRISCNVCLLTFQTKDLLKLHNKLYSCNVFKCNNCNAIFTMHISLIRHLKKRCCTKKLSGYRCNFCNRRFSYKRHVQSHLFHAHGNAIFSGESKIMKTSLESLGKSNNSDGIIMTELNTSHSPCAKNVNSSINISLKLSNSSNNTPTEGSSSNINSTHPKWLNDSYGTPSKRMKQTVLTDFISLYKDKPNDKWVSPEKVIDTENIPVTATIIPTSTLETLGNKTSTAAEVRDAEVQMSTSVKRIESPVRKRPFVQIYMNLKTMISLLRNEIKAESESSNTSHNMSYNLRPLKRRSSSLYDFCDLLEFETFGRSRQSFKRNKSPYIFNQSRRSALETKYKECVVRLEKCDIFLEPTSFVSNEDEDENEDAFKEAVSKYVKEEFEGFRETSSACNLSLKADTIASKRFNEFVKSFADRLIVPQQELFEFQKNFKVNQQKIFQCRICKKSFSLKENLREHIKLFHTIYMSSICNARYTSMNKLLTHYLRRHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDAPPVDVEINCNAFKKQHKCKGCRKRFWLYSCLKQHENICRRMKVLINKQRVPCVNHLSWSLKEPSDMELSIVQSHDLEQMLDVSSGTTRSLENYLAPSTLTTDDTFSSSFDTAAKNKRLLNGIACVKGHQADKMNRTKFPCTTCGTQFQKFKNLCIHVRIYCQTATEKCNVCNTMFSTKRLLQFHMLATHTPSCSVNYKFFCKFCNQGFVKKSNLQIHERHLHIGQDSRLALNSDCVVKDKLTCNVCHLLFESYERLVEHNMYYYKGNDFLCAICGKLFQGMYKFYHHNKLEHYPNEPWKLYPYKCDTCNEGFSYESHFHAHKLHVHSHDSPVDEARDRDTSDQTFRMCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00225500;
- 90% Identity
- iTF_00221504;
- 80% Identity
- -