Bbif003472.1
Basic Information
- Insect
- Bombus bifarius
- Gene Symbol
- -
- Assembly
- GCA_011952205.1
- Location
- NW:115556-132572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 1.1e+02 2.8 0.2 2 19 148 165 147 168 0.88 2 13 0.0055 0.35 10.7 0.7 1 22 174 195 174 195 0.95 3 13 0.0085 0.55 10.1 7.6 1 23 205 228 205 228 0.93 4 13 4.7e-07 3e-05 23.5 4.2 2 23 550 572 549 572 0.96 5 13 1.2 78 3.3 0.3 5 23 579 598 578 598 0.94 6 13 0.00051 0.033 13.9 1.2 2 23 605 626 605 626 0.96 7 13 0.46 29 4.6 4.9 1 20 653 672 653 674 0.89 8 13 0.0026 0.17 11.7 2.1 1 22 775 796 775 796 0.96 9 13 0.0065 0.41 10.5 1.8 2 23 804 826 804 826 0.93 10 13 0.01 0.67 9.8 4.5 1 23 836 859 836 859 0.95 11 13 3.7 2.3e+02 1.8 0.1 3 19 880 896 879 898 0.88 12 13 0.018 1.2 9.0 2.7 1 23 906 929 906 929 0.90 13 13 0.0013 0.084 12.6 4.8 1 23 940 963 940 963 0.95
Sequence Information
- Coding Sequence
- ATGGATCATTGTCAGAGTAAACAACATATACTGCCAGCCATAAGTACACACCCCACTGACCAATGCAGTAAACCACCGGAAACCCcagcgaaatgcatccactgtCAAGGTGATCATCCTGACAACAACAAAGGCTGCTCAGCCTACAAAACCCTGTACACAAACAGGTACCCTAaactcagagcaaaagagCCTTCTGAATAtgcaataacaataaaaaaagagcCAATCGATCCAGAGATCTGCGATGATTTGTCGCCAGTTGATACAAATACAgggaataaaaatgaaacagcgACGTTTAAAGGTGAATCTTCGGACGACGTTTATTGTAACAATGAAGAATCCGCGTTTCCTCAAGAAAGTAcgtatttagaaaataacaaatcgGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAACAGAATAAGTTgcaatgtttgtttgttaacTTTTCAAGCTAAACATTTATTGGAACtgcataataaattatatagcTGTAATGTATTTAAGTGTGATAATTGCACTGCAATCTTCACTATGCATATTTCGTTAATACGTCATTTAAAGAAGCGATGTTGTACGAAAAAATTGTCTGGATATAAGTGTAATTTTTGTAACCGAAAGTTTTCCTATAAAAGACATGTCCAGTCTCATTTATTCCATGCGCATGGGAACGCAATATTTTCTGGTGGAAgcaaaattatgaaaacatCTCCAGAATCGTTAGGAAAGTCGAATCATTCGGATGATATAGTCATGGCAGAATCAAAAACTTCACACAGTCCCTGCTCAAAGAACGTAAATAGctcaataaatatatctttgaaaCTATCTAATGACTCAAAGAATACATCCACCAAGGATTCGAGTAGCAAGATCAAGTTTACGCATCCGAAATGGTTAAACGATTCGCATGGTACACCTTCGAAAAGAATGAAGCAATCCGTCCTTACAGACTTCATATCGACGTACAAAGACAAACCGAATGACAGATGGGTTAGCCCGGAAAAAGTTATCGATCCGGAGAATATTCCTGTTACTGCGATTATTATTCCAACTTTAACGCTCGAGACATTTAGTAACAAGACATCAACGGCTGCAGAAGTTATTCAGATGTCTTCTTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAGATCATTTGTTCAAATTCGTGTGAATTTAAAGACAATGATATCTTTATTaaggaacgaaataaaagCTGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCAGTGAAAAGATGTTCTTCTTTATATGATTCTTACGATTTATTAGAGTGTAAAGAATGTGTGGTCCGCTTGGAGAAATGCGACATATTCTTGGAGCCTACTAGTTTTGTGTCAAACGAAGAtgaagacgaagacgaagtCGAAGACGCTTTCAAACAAGCAGTATCGAAAAATGTGAAAGAGGAATTTGAAGGTTTTCGCGAAACAAGCTCGACATGTAACATGCCTTTGAAAGCTGACACGATTGCGTCAAAGCGATTCAAtgaatttgtaaaatcttCCGCTGATAGATTAATCGTACTGCAACAAGAATCGGTTGAATTTCAGAAGAACTTTAAAGTCTGTCAgcagaaaataattcaatgtcatatttgtaaaaaatcgTTTTCTTCGAAGAAAAACCTGCGCGAGCACATGAAATTGTTCCATACGATTTACATTTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATGGTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCACTGTTGAAGCGGCACATGATTCTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCTTCACCGGTTGATgttgaaataaattgcaatGCATTCAAGAAACAACACAAATGCAAAGGTTGTCACAAACGATTTTGGCTATACTCATGTTTGAAACAACACGAGAATGTATGTCGTCGAATGAAAGTGTTAAGAAATAAACAACGTGTACCTCGTGTAAACCATTTGTCTCGGTCCTTGAAAGAACCAAGTGACATGGAACTCGGCATAGTACAGTCGCCTGATTTGGAACAAATGTTGGATGTTTCGGGTGGGACGACAAgatctttgaaaaattatttgtctCCGAGTGCGCTTAATACGGATGATACTTTCTCTTCGTCATTCGATACAGCTGCAAAACACAGAAGGTTACTTAATGGGATTGCATGCGTAAAGGGTCATCAAGCGGACAAGATGAACAGAACAAAGTTTCCTTGCACTACTTGTGGAACACAATTccaaacatttaaaaatttgtgcATACACGAGCGCACCTATCGCCAAACAGCCACAGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTCTTACAGTTTCACATGCTTGCTACTCATGTGCCTTCGTGTTCGGTGAACTACAAATTCTTTTGTAAGTTCTGCAATCAAGGATTTGTTAAGAAACAGAGTCTTCAAATTCACGAACGACACTTTCATAATGGGCAAGATTCTAGGCTGGTGCTGAATTCCGATTGTGTTGTGGAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAAAGATTAGTCGAGCATAACACGTATTATTACAAGGGCAATGATTTTTTATGCGCAATATGTGGTAAGTCGTTTCAAGGAAAGTACAAGTTTTATCATCACAACAAGTTGGAGCATTATCCGGACGAACCATCGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAACTACGAATCACATCTCCACGCACATAGGCTACACGTTCATTCGCACGATTCGCCCGCTGACAAAACGCGCGACCGCGATACATCGGATCAGACTTTTCGCGTGTGTTCATAA
- Protein Sequence
- MDHCQSKQHILPAISTHPTDQCSKPPETPAKCIHCQGDHPDNNKGCSAYKTLYTNRYPKLRAKEPSEYAITIKKEPIDPEICDDLSPVDTNTGNKNETATFKGESSDDVYCNNEESAFPQESTYLENNKSDPDKRKSKHKVPSNNRISCNVCLLTFQAKHLLELHNKLYSCNVFKCDNCTAIFTMHISLIRHLKKRCCTKKLSGYKCNFCNRKFSYKRHVQSHLFHAHGNAIFSGGSKIMKTSPESLGKSNHSDDIVMAESKTSHSPCSKNVNSSINISLKLSNDSKNTSTKDSSSKIKFTHPKWLNDSHGTPSKRMKQSVLTDFISTYKDKPNDRWVSPEKVIDPENIPVTAIIIPTLTLETFSNKTSTAAEVIQMSSSVKRIESPVRKRSFVQIRVNLKTMISLLRNEIKAESESSNTSHNMSYNLRPVKRCSSLYDSYDLLECKECVVRLEKCDIFLEPTSFVSNEDEDEDEVEDAFKQAVSKNVKEEFEGFRETSSTCNMPLKADTIASKRFNEFVKSSADRLIVLQQESVEFQKNFKVCQQKIIQCHICKKSFSSKKNLREHMKLFHTIYISSICNARYTSMNKLLTHYLRQHGVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDASPVDVEINCNAFKKQHKCKGCHKRFWLYSCLKQHENVCRRMKVLRNKQRVPRVNHLSRSLKEPSDMELGIVQSPDLEQMLDVSGGTTRSLKNYLSPSALNTDDTFSSSFDTAAKHRRLLNGIACVKGHQADKMNRTKFPCTTCGTQFQTFKNLCIHERTYRQTATEKCNVCNTMFSTKRFLQFHMLATHVPSCSVNYKFFCKFCNQGFVKKQSLQIHERHFHNGQDSRLVLNSDCVVEDKPICNICHLLFESYERLVEHNTYYYKGNDFLCAICGKSFQGKYKFYHHNKLEHYPDEPSKLYPYKCDTCNEGFNYESHLHAHRLHVHSHDSPADKTRDRDTSDQTFRVCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00225500;
- 90% Identity
- iTF_00225525;
- 80% Identity
- -