Bpyr014692.1
Basic Information
- Insect
- Bombus pyrosoma
- Gene Symbol
- -
- Assembly
- GCA_014825855.1
- Location
- CM026131.1:19773024-19776187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 12 6.7 0.4 2 19 86 103 85 106 0.92 2 13 0.0039 0.37 11.5 0.6 1 22 112 133 112 133 0.95 3 13 0.017 1.6 9.4 7.9 1 23 143 166 143 166 0.93 4 13 2e-06 0.00019 21.8 3.9 1 23 529 552 529 552 0.97 5 13 1.5 1.4e+02 3.3 0.3 5 23 559 578 558 578 0.94 6 13 0.00063 0.06 14.0 1.2 2 23 585 606 585 606 0.96 7 13 1.3 1.2e+02 3.5 3.3 1 20 633 652 633 654 0.89 8 13 0.00062 0.06 14.0 2.0 1 22 756 777 756 777 0.96 9 13 3.7e-05 0.0035 17.8 1.0 2 23 785 807 785 807 0.95 10 13 0.23 22 5.9 3.9 1 23 817 840 817 840 0.95 11 13 9.1 8.8e+02 0.9 0.2 3 19 861 877 860 879 0.81 12 13 0.54 51 4.7 4.6 1 23 887 910 887 910 0.88 13 13 0.034 3.2 8.5 5.9 1 23 921 944 921 944 0.94
Sequence Information
- Coding Sequence
- ATGTATCCTTCTGAATATGCAATACGAATAAAGGAAGAGGCAATCGATCCAGAGATCTGCGATGATTTATCGCCAGTTGATACGAATACAGAGAATGAAAATGAAACAGCGACGTTTGAAGGTGAATCTTCGGATGGCGTTTATCGTAGAGATCGAGAATCCGCGTTTCCTCAAGAAAGTACATATTTAGAAAATAACAAATCGGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAACAGAATAAGTTGCAATGTTTGTTTGTTAACTTTTCAAACTAAACATTTATTGGAACTGCATAATAAATTATATAGCTGTAATGTATTCAAGTGTAATAATTGCACTGCTATCTTCAGTATGCATATTTCGTTGATACGTCATTTAAAGATGCGATGTTGTACGAAACAATGGCCTGGATATAGATGTAATTTTTGTAACCGAAGGTTTTCCTATAAAAGGCATGTCCAATCTCATTTATTCCATATGCATGGGAACGCAATATTTTCTGGTGAAAGCAAAATTACGAAAACATTTTCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGTATAGTCATGGCAGGATCAAATACTTCACACAGTCCCTCCCAAGAAAACGTAAATAGCTCAATAAATATACCTTTGAAACTATCTAATAGTTCAAACAATACACCCACCAAGGGTTCGAGCAGCAAGATCAAGTCTACGCATCCGAAATGGTTAAACGATTCGTATGGTACACCTTCGAAAAGGATGAAACAGACGGTCCTTACAGACTTTATATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCTCCGAAAAAGTTATCGATACGGAGAATATTCCTGTTGCTGCGACTATTATTCCAACTTCAACGCTCGAGACATTTAGTAACATGACATCAACGGCTTCCGAAGTTATCCAGATGTCTACTTCTGTTAGGCGAATCGAATCTTCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCCAAAACAATGATATCCTTATTAAGGAACGAAATAAAAGCTGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCAGTAAGAAGATGTCCTTCTTCTTTATATGATTTTTACGATTTATTGGGGTTTGAGACCTTTGGAAAATCAAGACAATCTTTCAGAAGAAACAAGTCACCCTATATGTTTAACCGAAGTGAAAGATCTGCACGTGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAACCTGCTAGTTTTGTGTCAAACGAAGACGAGGACGAAAACGAAAAGGAAAACGAAAAGGAAAACGAAAACGAAAACGAAGACGGTTTCAAACAAACAGTATCGAAAAATGTGAAAGAGGAATTTGAAGGTTTTCGTGAGACAAGCTCGGCAGGTAACTTGCCTTTGGAAGCTGGCACGATTGCATCAAAGCGATTCAATAAATTTGTAAAATCTTTCGTTGATAGATTAACCGTACCTCAACAAGAATCGGTTGAGTTTAAGAAGAACTTTAAGGTCGATCAGCAGAAAATATTTCAATGTCATATTTGTAAAAAATCGTTTTCTTTGAAAGTGAATCTGCGCGAGCACATGAAATTGTTCCATGCGATTTACATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTGCGTCAACATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTACGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGCGCTACCGGTTGATGTTGAAATAAATTGCAACGCATTCAAGAAACAACACAAATGCCAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACACGAGAACGTATGTCGTCGAATGAAAGTCTTAATACATAAACAACGTGCACCTCGTGTAAATCATTTGTCTCGGTCCTTGAAAGAACCAAGTGACATGGAACTCGGCACAGTACAGTCACCTGATTTGGAACAAATGTTGGATGTTCCGGGTGAGACGACAAGACCTTTGGAAAATAATTCGGCTCCGAGTACGCTTATTACGGATGATAATACTCTCTCTTCGTCATTCGATGCAGATGCAAAGAACAAAAGGCTATTTAATGGGATTGCATGCGTAAAGGGTTACCAAGCGGACAAGATGAGCAGAACAAAGTTTCCTTGTACTACTTGTGGGACACAATTCAGAACATTTCAAAATTTGTGCATACACGAGCGCACCTATTGCCGAACAGCCACCGAAAAGTGTAACGTTTGTAATACGATGTTTTCCACTAAAAGATTATTACAGCTTCACATGCTTGCTACCCATACGCCTTCGTGCTCGGTGAACTACAAATTCTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATGGAAAGTTCAAATTCACGAACGGCACTTCCATATTAGGCAGAATCGTAGACGGGTGCTGAATTCCGATTGCGTTTTGAAAGATAAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTTGTCGAGCATAACATGTATTATTACAAGGGCAAAGATTTTTTATGCGCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTCATCATCACAACAAGTTGAAGCATTATCCGGACGAACTATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAAACACATTTCCACGCGCATAAGCTACACGTTCATTCGCACGATTCGCCCGCTGACGAAGCGCTCGACCGCGATACATCGGATCAGACTTTTCGCACGTGTTCATGA
- Protein Sequence
- MYPSEYAIRIKEEAIDPEICDDLSPVDTNTENENETATFEGESSDGVYRRDRESAFPQESTYLENNKSDPDKRKSKHKVPSNNRISCNVCLLTFQTKHLLELHNKLYSCNVFKCNNCTAIFSMHISLIRHLKMRCCTKQWPGYRCNFCNRRFSYKRHVQSHLFHMHGNAIFSGESKITKTFSESLGKSNHSDGIVMAGSNTSHSPSQENVNSSINIPLKLSNSSNNTPTKGSSSKIKSTHPKWLNDSYGTPSKRMKQTVLTDFISLYKDKPNDKWVSSEKVIDTENIPVAATIIPTSTLETFSNMTSTASEVIQMSTSVRRIESSVRKRPFVQIHVNSKTMISLLRNEIKAESESSNTSHNMSYNLRPVRRCPSSLYDFYDLLGFETFGKSRQSFRRNKSPYMFNRSERSAREAKCKECVVRLEKCDKFLEPASFVSNEDEDENEKENEKENENENEDGFKQTVSKNVKEEFEGFRETSSAGNLPLEAGTIASKRFNKFVKSFVDRLTVPQQESVEFKKNFKVDQQKIFQCHICKKSFSLKVNLREHMKLFHAIYMSSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDALPVDVEINCNAFKKQHKCQGCRKRFWLYSCLKQHENVCRRMKVLIHKQRAPRVNHLSRSLKEPSDMELGTVQSPDLEQMLDVPGETTRPLENNSAPSTLITDDNTLSSSFDADAKNKRLFNGIACVKGYQADKMSRTKFPCTTCGTQFRTFQNLCIHERTYCRTATEKCNVCNTMFSTKRLLQLHMLATHTPSCSVNYKFFCKFCNQGFVKKWKVQIHERHFHIRQNRRRVLNSDCVLKDKPICNICHLLFESYERFVEHNMYYYKGKDFLCAICGKSFQGMYKFHHHNKLKHYPDELWKLYPYKCDTCNEGFSYETHFHAHKLHVHSHDSPADEALDRDTSDQTFRTCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00225500;
- 90% Identity
- iTF_00221511;
- 80% Identity
- -