Bcam011866.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus campestris
Gene Symbol
-
Assembly
GCA_905333015.1
Location
HG995132.1:10255544-10258672[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.012 0.94 10.0 0.5 2 21 327 346 326 347 0.93
2 16 0.22 17 6.0 1.6 2 20 384 402 383 404 0.92
3 16 0.0018 0.14 12.6 2.3 2 23 446 468 445 468 0.94
4 16 0.0048 0.38 11.2 0.2 1 23 474 496 474 496 0.96
5 16 3.2e-06 0.00025 21.2 3.4 1 23 502 524 502 524 0.96
6 16 0.00026 0.02 15.2 2.0 1 23 533 555 533 555 0.96
7 16 2.1e-05 0.0016 18.6 1.8 1 23 561 583 561 583 0.98
8 16 7.8e-07 6.1e-05 23.1 1.0 1 23 588 610 588 610 0.97
9 16 0.0046 0.36 11.3 7.1 1 23 617 639 617 639 0.99
10 16 0.00021 0.017 15.5 0.9 2 23 659 680 658 680 0.97
11 16 0.00064 0.051 14.0 0.4 3 23 689 710 687 710 0.96
12 16 0.00074 0.058 13.8 0.4 1 23 716 738 716 738 0.98
13 16 0.0005 0.04 14.3 2.7 1 23 744 766 744 766 0.98
14 16 2.4e-05 0.0019 18.5 0.7 1 23 772 794 772 794 0.95
15 16 4.3e-06 0.00034 20.8 1.2 1 23 800 822 800 822 0.97
16 16 0.00021 0.017 15.5 0.3 2 23 828 849 827 849 0.95

Sequence Information

Coding Sequence
ATGAAGATAGTTTGTGCTGTCAAAACTTGTAAATACTCTTTGGATAATGAAGACTCGACAAATGTCAAATTCATTCACTTTCCGAACAGTGATACTTCAAAAATATGGGCACATCAGTGTGATAGAACGGATCTTTTAATGAAATCTAATGAAGAATTGTATTCAAACTATTATATATGTTCTCATCATATAGAAGATcgttatttcataaataagaCAGATCCTGTGATAATAGATCAACATGCTATTCCAACATTATTTGAATCTGATATTATTGCTGGAAAGGATTCAAAAAATGtctttgataaaaatgaacaaacaGAAATAACtgataatgttatgttatcaTATTGTGATATGGTTGTTGAAATGGATCAGTATCATGAAATcagtattaaattttcaaatttatgtaGAATATGTGAAGAACCATGTTTCGAtggtatagaaatattttcactgAAAGGAATAGATCTAAGGCtaagagaaaaaataagtTTACATTTACCAATTATGGTTGATATGGAAGATATAATGCCACAGAAATTGTGCATGAATTGCTATAATAAATTAGAAGTTGCTCATTCGTTAGTTATAACATCTTTAAGAACAGACATGAGGttgaaaaaatttttgaatattaatgCAGAActAAATTATGATCATAAGTATAGTGCCATAGCAAAAAAGTGTTCCTTAGAAATAGATGAAGAAATGTCTATGAATGAAACAACTGATGTTACACCTGTAGAATTGTCTTCTAGCAAAATTTCTGTGAATCAGGatatttctaaagaatttAGTGACTTGGAAAATACCAATGTGCAAAAAGATAGTTTTCAAAATAGTATAAGAAAAGAAGGGCAATCtgaattaaatagaattattgcATCACATAATGAGGAAATTAAAGAAGATGAATGTACAGATAGACTAGCAAaagattattcagataatgaaatattaaataatgaaattcaatgcttgtattgtaaaaatatgtttaaaacaCAAGAGATGTTTGAAAATCACAAAATGTTGTGTGATGGAGGAGAAATAGTTGtacaaaaggaaaaagaagctaataataatatgaatgaTAAAGAATCcaataatataaagataatgaactttcaatttataacaaaaactTGTAATGTTTGTCATGCAAATTTTGAATCTGAAAAACACTTTGTTGAACATAAACTTTcatattgtaaatttcttCAAGTAAAAGATTATCAAATtactgataaaataattatgaacaAAGAACAGTGCAATAATCATGAAGATTCCTACAATACCAATAATCCATCAATggaaaccaataaaaaatgtgGCCATTGCggtttgatttatattactaaaaaggaattattaaatcatattatGGACTGTCATGAAGGTCAACTTCTATTTAAATGTATCATGTGCGATAGAAGCTATGAAAAGTGGTCTAGTTTAGATGTACATGAAGCCACTCACAGAATAGATAAACCTTACTTATGTGATTTATGTGGAAAGAGTTTTAAGCATTCCAATAATTTAAGAGGTCATAAAAGAACTCATTTAGATGAttcaaaaaagaaacgacACATTTGTGACATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAATCAACATAATGGAAATAAACCTTACTCCTGTGAAAAGTGTGGCAAAGCTTTTTACAAAAGAATACAACTAAGACAGCATAAACTTTCTCATGGTTTGAATAAACATGTCTGTCCAATTTGTGGCACAGCTTTCAATCGTAAAGGAAACATGAATACACATCTTAAACGTCATAACAGTGGAGAtggtatatatacatgtagcATATGTACACACACATGTAAATCAATGAGTGAGCTAAAATTGCATAGAAAAAAACATACAGAACAAGACACTATAGAAAACATAGAAAAAAAACATATAGATAAACCTACATGGAAATGTAAGAGTTGTGACCGAATATTTTCAACTCGAACGGTATTAGTAAATCATGAACGTACAcataaagaagataaaataagTATCGATTGTAATATTTGTGGGAAAAAATTAGCAAGCAAAAATTCTCTGATGTATCATAAAAAATCCATTCATTCTTCGGAGAGACCGTATATGTGTCAATATTGTGAAGAATCGTTTGTTTCCAAAGAATCACGTCTTATACACGAAAGAATACATACCGGAGAACGTCCTTACGTTtgcaaaatatgtaaaatggaATACAAATGTTCAAGCAATCTTAATCAacacataaaaattcattctgGGATTAAgccttatatatgtatatattgtaataaaagttTCACGCGTAGAGGAACGTTAAATGTGCATGAGAGAATACATACTGGAGAGAAACCATTTGCTTGCGGAACGTGTGGTAGAACATTTTCTCAGAAAAATGACATGATTAAGCACACTAAAACACATAATGCCAAATCGTTGTCTTGTGAACAATGCAATGAAGTTTTTACAAGGAAGAAAGATATCCTAAAGCATATTGCTTTGCACGAACAAAATAATCCTATAATTCAGGAGTATGTAGAGATACAACAAGAAATAGAACCTTACAATGTGGATATAGCATGCTctgaatttgaataa
Protein Sequence
MKIVCAVKTCKYSLDNEDSTNVKFIHFPNSDTSKIWAHQCDRTDLLMKSNEELYSNYYICSHHIEDRYFINKTDPVIIDQHAIPTLFESDIIAGKDSKNVFDKNEQTEITDNVMLSYCDMVVEMDQYHEISIKFSNLCRICEEPCFDGIEIFSLKGIDLRLREKISLHLPIMVDMEDIMPQKLCMNCYNKLEVAHSLVITSLRTDMRLKKFLNINAELNYDHKYSAIAKKCSLEIDEEMSMNETTDVTPVELSSSKISVNQDISKEFSDLENTNVQKDSFQNSIRKEGQSELNRIIASHNEEIKEDECTDRLAKDYSDNEILNNEIQCLYCKNMFKTQEMFENHKMLCDGGEIVVQKEKEANNNMNDKESNNIKIMNFQFITKTCNVCHANFESEKHFVEHKLSYCKFLQVKDYQITDKIIMNKEQCNNHEDSYNTNNPSMETNKKCGHCGLIYITKKELLNHIMDCHEGQLLFKCIMCDRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHVCPICGTAFNRKGNMNTHLKRHNSGDGIYTCSICTHTCKSMSELKLHRKKHTEQDTIENIEKKHIDKPTWKCKSCDRIFSTRTVLVNHERTHKEDKISIDCNICGKKLASKNSLMYHKKSIHSSERPYMCQYCEESFVSKESRLIHERIHTGERPYVCKICKMEYKCSSNLNQHIKIHSGIKPYICIYCNKSFTRRGTLNVHERIHTGEKPFACGTCGRTFSQKNDMIKHTKTHNAKSLSCEQCNEVFTRKKDILKHIALHEQNNPIIQEYVEIQQEIEPYNVDIACSEFE