Bpas006571.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus pascuorum
Gene Symbol
-
Assembly
GCA_905332965.1
Location
HG995279.1:10273814-10278322[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.012 1.3 10.0 0.5 2 21 327 346 326 347 0.93
2 16 0.16 17 6.4 1.6 2 20 383 401 382 403 0.92
3 16 0.0018 0.19 12.6 2.3 2 23 445 467 444 467 0.94
4 16 0.0049 0.52 11.2 0.2 1 23 473 495 473 495 0.96
5 16 3.2e-06 0.00034 21.2 3.4 1 23 501 523 501 523 0.96
6 16 0.00026 0.028 15.2 2.0 1 23 532 554 532 554 0.96
7 16 2.1e-05 0.0022 18.7 1.8 1 23 560 582 560 582 0.98
8 16 7.9e-07 8.3e-05 23.1 1.0 1 23 587 609 587 609 0.97
9 16 0.0047 0.49 11.3 7.1 1 23 616 638 616 638 0.99
10 16 0.00022 0.023 15.4 1.1 2 23 658 679 657 679 0.97
11 16 0.0011 0.12 13.2 0.3 3 23 688 709 686 709 0.95
12 16 0.00075 0.079 13.8 0.4 1 23 715 737 715 737 0.98
13 16 0.0016 0.17 12.7 2.6 1 23 743 765 743 765 0.98
14 16 2.4e-05 0.0026 18.5 0.7 1 23 771 793 771 793 0.95
15 16 2.5e-06 0.00026 21.6 1.4 1 23 799 821 799 821 0.97
16 16 0.00056 0.059 14.2 0.1 2 23 827 848 826 848 0.95

Sequence Information

Coding Sequence
ATGAAGATAGTTTGCGCTGCCAAAACTTGTAAATACTCTTTGGATAATGAAGACTCGACAAATGTCAAATTCATTCACTTTCCGAACAGTGATACTTCAAAAATATGGGCACATCAGTGTGATAGAACGGATCTTTTAATGAAATCTAATGAAGAATTGTATTCAAATTATTATATATGTTCTCATCATATAGAAGATCGTTATTTCATAAATAAGACAGATCCTGTGATAATAGATCAACATGCTATTCCAACATTATTTGAATCTGATATTATTGCTGGAAAGGATTCAAAAAATGTCTTTGATAAAAATGAACAAACAGAAATAACTGATAATGTTATGTTATCATATTGTGATATGGATGTTGAAATGGATCAGTATCATGAAATCAGTATTAAATTTTCAAATTTATGTAGAATATGTGAAGAACCATGTTTCGATGGTATAGAAATATTTTCACTGAGAGGAATAGATCTGAGGCTAAAAGAAAAAATAAGTTTACATTTACCAATCATGGTTGATATGGAAGATATAATGCCACAGAAATTGTGCATGAATTGCTATAATAAGTTAGAAGTTGCACATTCGTTAGTTATAACATCTTTAAGAACAGACATGAGGTTGAAAAAATTTTTGAATATTAATGCGGAACTAAATTATGATCATAAGTATAGTGCCATAGCAAAAAAGTGTTCCTTAGAAATAGATGAAGAAATGTCTATGAATGAAACAACTGATGTTACACCTGTAGAATTATCTTCTAGCAAAATTTCTATGAATCAGGATGTTCCTAAAGAATTTAGTGACTTGGAAAATACCAATGTGCAAAAAGATAGTTTTCAAAATAATATAAGAAAAGAAATGCAATCTGAATTAAATAGCTTTATTGCATCACATAATCAGGAAATTAAAGAAGATGAATGTACAGATAGACTAGCAAAAGATTATTCAGATAATAAAATATTAAATAATGAAATTCAATGCTTGTATTGTAAAAATATGTTTAAAACACAAGAGATGTTTGAAAATCACAAAATGTTGTGTGATGGAGGAGAAATAGTTGTACAGAAGGAAAAAGAAGCTAATAATATGAATGATAAAGAATCCAATAATATAAAGATAATGAATCTTCAATTTATAACAAAAACTTGTAATGTTTGTCATGCAAATTTTGAAACTGAGAAACACTTTGTTGAACATAAACTTTCGTATTGTAAATTTCTTCAGGTAAAAGATTATCAAATTACTGATAAAATAATTATGAACAAAGAACAGTGCAATAATCATGAAGATTCCTACAATACCAATAATCCATCAATGGAAACCAATAAAAAATGTGGCCATTGTGGTTTGATTTATATTACTAAAAAGGAATTATTAAATCATATTATGGACTGTCATGAAGGTCAACTTCTATTTAAATGTATCATGTGTGATAGAAGCTATGAAAAATGGTCTAGTTTAGATGTACATGAAGCCACTCATAGGATAGATAAACCTTATTTATGTGATTTATGTGGAAAGAGTTTTAAACATTCCAATAATTTAAGAGGTCATAAAAGAACTCATTTAGATGATTCAAAAAAGAAACGACACATTTGTGACATTTGTGGAAATGCATTTAGATCTAGGTTTCATTTGGGAGAACATATGAATCAACATAATGGAAATAAACCTTACTCCTGTGAAAAGTGTGGCAAAGCTTTTTACAAAAGAATACAACTAAGACAGCATAAACTTTCTCATGGTTTGAATAAACATGTCTGTCCAATTTGTGGCACAGCTTTCAATCGTAAAGGAAACATGAATACACATCTTAAACGTCATAACAGTAGAGATGGTATATATACATGTAGCATATGTACACACACATGTAAATCAATGAGTGAGCTAAAGTTACATAGAAAAAAACATACAGAACAAGATACTATAGAAAACATAGAAAAGAAACATATAGATAAACCTACATGGAAATGTAAGAGTTGTGACCGAATATTTTCAACTCGAACGGTATTATTAAATCATGAACGTACACATAAAGAAGATAAAATAAGTATCGATTGTAATATTTGTGGAAAAAAATTAGCAAGCAAAAATTCTCTGGTGTATCATAAAAAATCCATTCATTCTTCGGAGAGACCGTATATGTGTCAATATTGTGAAGAATCGTTTGTTTCCAAAGAATCACGTCTTATACACGAAAGAATACATACCGGAGAACGTCCTTACGTTTGCAAAATATGTAAAATGGAATACAAATGTTCAAGTAATCTTAATCAGCACGTAAAAATTCATTCTGGGATTAAGCCTTATATATGTATATATTGTAATAAAAGTTTCACGCGTAGAGGAACGTTAAATGTGCATGAAAGAATACATACTGGAGAGAAACCATTTGCTTGCGAAACGTGTGGTAGAACATTTTCTCAGAAAAATGACATGATCAAGCACACTAAAACACATAATGCCAAATCGTTGTCTTGTGAACAATGCAATGAAGTTTTCGCAAGAAAAAAAGATATCCTAAAGCATATTGCTTTGCACGAACAAAATAATCCTATAATTCAGGAATATGTAGAGATACAACAAGAAATAGAACCTTACAGTGTGGATATAGCATGCTCTGAATTTGAATAA
Protein Sequence
MKIVCAAKTCKYSLDNEDSTNVKFIHFPNSDTSKIWAHQCDRTDLLMKSNEELYSNYYICSHHIEDRYFINKTDPVIIDQHAIPTLFESDIIAGKDSKNVFDKNEQTEITDNVMLSYCDMDVEMDQYHEISIKFSNLCRICEEPCFDGIEIFSLRGIDLRLKEKISLHLPIMVDMEDIMPQKLCMNCYNKLEVAHSLVITSLRTDMRLKKFLNINAELNYDHKYSAIAKKCSLEIDEEMSMNETTDVTPVELSSSKISMNQDVPKEFSDLENTNVQKDSFQNNIRKEMQSELNSFIASHNQEIKEDECTDRLAKDYSDNKILNNEIQCLYCKNMFKTQEMFENHKMLCDGGEIVVQKEKEANNMNDKESNNIKIMNLQFITKTCNVCHANFETEKHFVEHKLSYCKFLQVKDYQITDKIIMNKEQCNNHEDSYNTNNPSMETNKKCGHCGLIYITKKELLNHIMDCHEGQLLFKCIMCDRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHVCPICGTAFNRKGNMNTHLKRHNSRDGIYTCSICTHTCKSMSELKLHRKKHTEQDTIENIEKKHIDKPTWKCKSCDRIFSTRTVLLNHERTHKEDKISIDCNICGKKLASKNSLVYHKKSIHSSERPYMCQYCEESFVSKESRLIHERIHTGERPYVCKICKMEYKCSSNLNQHVKIHSGIKPYICIYCNKSFTRRGTLNVHERIHTGEKPFACETCGRTFSQKNDMIKHTKTHNAKSLSCEQCNEVFARKKDILKHIALHEQNNPIIQEYVEIQQEIEPYSVDIACSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00734082;
90% Identity
iTF_00215855;
80% Identity
-