Bbre014039.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus breviceps
Gene Symbol
-
Assembly
GCA_014825925.1
Location
CM026183.1:2678131-2681262[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.012 0.88 10.0 0.5 2 21 330 349 329 350 0.93
2 16 0.16 12 6.4 1.6 2 20 386 404 385 406 0.92
3 16 0.0018 0.13 12.5 2.3 2 23 448 470 447 470 0.94
4 16 0.0049 0.36 11.2 0.2 1 23 476 498 476 498 0.96
5 16 3.2e-06 0.00024 21.2 3.4 1 23 504 526 504 526 0.96
6 16 0.00026 0.019 15.2 2.0 1 23 535 557 535 557 0.96
7 16 2.1e-05 0.0016 18.6 1.8 1 23 563 585 563 585 0.98
8 16 7.8e-07 5.8e-05 23.1 1.0 1 23 590 612 590 612 0.97
9 16 0.0034 0.25 11.7 7.4 1 23 619 641 619 641 0.99
10 16 0.00016 0.012 15.8 0.7 2 23 661 682 660 682 0.97
11 16 0.00064 0.047 14.0 0.3 2 23 690 712 689 712 0.95
12 16 0.00074 0.055 13.8 0.4 1 23 718 740 718 740 0.98
13 16 0.00051 0.037 14.3 2.7 1 23 746 768 746 768 0.98
14 16 2.4e-05 0.0018 18.5 0.7 1 23 774 796 774 796 0.95
15 16 2.5e-06 0.00018 21.6 1.4 1 23 802 824 802 824 0.97
16 16 0.00056 0.041 14.2 0.1 2 23 830 851 829 851 0.95

Sequence Information

Coding Sequence
ATGAAGATAGTTTGCGCTGCCAAAACTTGTAAATACTCTTTGGATAATGAAGACTCGACAAATGTCAAATTCATTCACTTTCCGAACAGTGATACttCAAAAATATGGGCACATCAGTGTGATAGGACTGATCTTTTAATGAAATCTAATGAAGAAttgtattcaaattattatatatgttctCATCATATAGAAGAtcgttatttcataaataagaCAGATCCTGTGATAATAGATCAACATGCTATTCCAACATTATTTGAATCTGATATTATTGCTGGAAAGGATTCAAAAAATgtctttgataaaaatgaacaaacaGAAATAACTGATAATGTTATGTTATCATATTGTGATATGGATGTTGAAATGGATCAGTATCATGAAATcagtattaaattttcaaatttatgtaGAATATGTGAAGAACCATGTTTCGATggtatagaaatattttcactgaAAGGAATAGATCTAAGGctaagagaaaaaataaatttacatttaccaATCATGGTTGATATGGAAGATATAATGCCACAGAAATTATGCATgaattgctataataaattagaagttGCACATTCGTTAGTTATAACATCTTTAAGAACAGACATGaggttgaaaaaatatttgaatattaatacaGAActaAATTATGATGATAAGTATAGTGCCATAGCAAAAAAGTGTTCCTTAGAAATAGATGAAGAAATGTCTATGAATGAAACAACTGATGTTACACCTGTAGAATTATCTTCTAgcaaaatgaatgaaatttctatgaatcAAGAAGTTCCTAAAGAGTTTAGTGACTTGGAAAATACCAATATACAAAAGGATAGTTTTCAAAATAGTATAAGAAAGGAAGTGCAATCTGAATTAAATAGCTTTATTGCATCACATAATGaggaaattaaagaagatGAATGTACAGATAgactaacaaaaaattattcaggtaatgaaatattaaataatgaaattcaatgcttgtattgtaaaaatatgtttaaaacaCAAGAGATGTTTGAAAATCACAAAATGTTGTGTGATGGAGGAGAAATAGTTGTACAGGAAAAAGaagctaataataatataaatgataaagaatccaataatataaagataatgaactttcaatttataacaaaaaccTGTAATGTTTGTCATGCAAATTTTGAAACTGAGAAACACTTTGTTGAACATAAACTTTcgtattgtaaatttcttgAAGTAAAAGATTATCAAATtactgataaaataattatgaacaAAGAACAGTGCAATAATCATAAAGATTCCTACAATACCAATAATCCATCAATGGAAACCAATAAAAAATGTGGTCATTGTGGTTTGatttatattactaaaaaggaattattaaatcatattatGGACTGTCATGAAGGTCAACTTCTATTTAAATGTATCATGTGTGATAGAAGCTATGAAAAGTGGTCTAGTTTAGATGTACATGAAGCCACTCACAGAATAGATAAACCTTATTTATGTGATTTATGTGGAAAGAGTTTTAAACATTCCAATAATTTAAGAGGTCATAAAAGAACTCATTTAGATGattcaaaaaagaaacgacACATTTGTGACATTTGTGGAAACGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAATCAACATAATGGAAATAAACCTTACTCTTGTGAAAAGTGTGGCAAAGCTTTTTACAAAAGAATACAACTAAGACAGCATAAACTTTCTCATGGTTTGAATAAACATGTCTGTCCAATTTGTGGCACAGCTTTCAATCGTAAAGGAAACATGAATACACACCTTAAACGCCATAACAGTGGGGAtggtatatatacatgtagcATATGTACACACACATGTAAATCAATGAGTGAGCTAAAGTCACATAGAAAAAAACATACAGAACAAGATACTATAGAAAAcatagaaaagaaacatatcGATAAACCTACATGGAAATGTAAGAGTTGTGACCGAATATTTACAACTCGAGCGGTATTATTAAATCATGAACGTACAcataaagaagataaaataagtatcgtttgtaatatttgtgGGAAAAAATtagcaagcaaaaattctcTGGTGTATCATAAAAAATCCATTCATTCTTCGGAGAGACCGTACATGTGTCAATATTGTGAAGAATCGTTTGTTTCCAAAGAATCACGTCTTATACACGAAAGAATACATACCGGAGAACGTCCTTATGTTtgcaaaatatgtaaaatggaATACAAATGTTCAAGCAATCTTAATCAacacataaaaattcattctgGGATTAAGccttatatatgtatatattgtaataaaagcTTCACGCGTAGAGGAACGTTAAATGTGCATGAGAGAATACATACTGGAGAGAAACCATTTGCTTGCGAAACGTGTGGTAGAacattttctcaaaaaaatgACATGATCAAGCATACTAAAACACATAATGCCAAATCGTTGTCTTGTGAACAATGCAATGAAGTTTttgcaagaaagaaagatatccTAAAGCATATTGCTTTGCACGAACAAAATAATCCTATAATTCAGGAGTATGTAGAGATACAACAAGAAATAGAACCTTACAGTGTGAATATACCATGCTctgaatttgaataa
Protein Sequence
MKIVCAAKTCKYSLDNEDSTNVKFIHFPNSDTSKIWAHQCDRTDLLMKSNEELYSNYYICSHHIEDRYFINKTDPVIIDQHAIPTLFESDIIAGKDSKNVFDKNEQTEITDNVMLSYCDMDVEMDQYHEISIKFSNLCRICEEPCFDGIEIFSLKGIDLRLREKINLHLPIMVDMEDIMPQKLCMNCYNKLEVAHSLVITSLRTDMRLKKYLNINTELNYDDKYSAIAKKCSLEIDEEMSMNETTDVTPVELSSSKMNEISMNQEVPKEFSDLENTNIQKDSFQNSIRKEVQSELNSFIASHNEEIKEDECTDRLTKNYSGNEILNNEIQCLYCKNMFKTQEMFENHKMLCDGGEIVVQEKEANNNINDKESNNIKIMNFQFITKTCNVCHANFETEKHFVEHKLSYCKFLEVKDYQITDKIIMNKEQCNNHKDSYNTNNPSMETNKKCGHCGLIYITKKELLNHIMDCHEGQLLFKCIMCDRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHVCPICGTAFNRKGNMNTHLKRHNSGDGIYTCSICTHTCKSMSELKSHRKKHTEQDTIENIEKKHIDKPTWKCKSCDRIFTTRAVLLNHERTHKEDKISIVCNICGKKLASKNSLVYHKKSIHSSERPYMCQYCEESFVSKESRLIHERIHTGERPYVCKICKMEYKCSSNLNQHIKIHSGIKPYICIYCNKSFTRRGTLNVHERIHTGEKPFACETCGRTFSQKNDMIKHTKTHNAKSLSCEQCNEVFARKKDILKHIALHEQNNPIIQEYVEIQQEIEPYSVNIPCSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00734082;
90% Identity
iTF_00215855;
80% Identity
-