Bhae008148.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus haemorrhoidalis
Gene Symbol
-
Assembly
GCA_014825975.1
Location
CM026165.1:2609802-2612839[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.018 1.6 9.4 0.5 2 21 311 330 310 331 0.93
2 16 0.038 3.4 8.4 1.2 2 20 368 386 367 388 0.92
3 16 0.0018 0.16 12.6 2.3 2 23 430 452 429 452 0.94
4 16 0.0047 0.43 11.2 0.2 1 23 458 480 458 480 0.96
5 16 3.1e-06 0.00028 21.2 3.4 1 23 486 508 486 508 0.96
6 16 0.00025 0.023 15.2 2.0 1 23 517 539 517 539 0.96
7 16 2e-05 0.0018 18.7 1.8 1 23 545 567 545 567 0.98
8 16 7.6e-07 6.8e-05 23.2 1.0 1 23 572 594 572 594 0.97
9 16 0.0045 0.4 11.3 7.1 1 23 601 623 601 623 0.99
10 16 0.00015 0.014 15.9 0.6 2 23 643 664 642 664 0.97
11 16 0.0011 0.096 13.3 0.3 3 23 673 694 671 694 0.95
12 16 0.00072 0.065 13.8 0.4 1 23 700 722 700 722 0.98
13 16 0.00049 0.044 14.3 2.7 1 23 728 750 728 750 0.98
14 16 2.3e-05 0.002 18.5 0.9 1 23 756 778 756 778 0.95
15 16 2.4e-06 0.00022 21.6 1.4 1 23 784 806 784 806 0.97
16 16 0.00022 0.02 15.4 0.2 2 23 812 833 811 833 0.96

Sequence Information

Coding Sequence
ATGAAGATAGTTTGCGCTGCCAAAACTTGTAAATACTCTTTGGATAATGAAGACTCGACAAATGTCAAATTCATTCACTTTCCGAACAGCGATACTTCAAAAATATGGGCACATCAGTGTGATAGAACGGATCTTTTAATGAAATCTAATGAAGAATTGTATTCAAATTATTATATATGTTCTCATCATATAGAAGATCGTTATTTCATAAATAAGACAGATCCTGTGATAATAGATCAACATGCTATTCCAACATTATTTGAATCTGATATTGTTGCTGGAAAGGATTCAAAAAATGTCTTTGATAAAAATGAACAAACAGAAATAACTGATAATGTTATGTTATCGTATTGTGATATGGATGTTGGAATGGATCAGTATCATGAAATCAGTATTAAATTTTCAAATTTATGTAGAATATGTGAAGAACCATGTTTCGATGGTATAGAAATATTTTCACTGAAAGGAATAGATCTAAGATTAAAAGAAAAAATAAGTTTACATTTACCAATCATGGTTGATATGGAAGATATAATGCCACAGAAATTGTGCATGAATTGCTATAATAAATTAGAAGTTGCACATTCGTTAGTTATAACATCTTTAAGAACAGACATGAGGTTGAAAAAATTTTTGAATATTAATGCAGAACTAAATTATGATCATAAGTATAGTGCCATAGCAAAAAAGTGTTCCCTAGAAATAGATGAAGAAATGTCTATGAATGAAACAACTGATGTTCCTAAAGAATTTAGTGACTTGGAAAATACCAATGTGCAAAAAGATAGTTTTCAAAATAGTATAAGAAAGGAAGTACAATCTGAATTAAATAGCTTTATTGCATCACATAATGAGGAAATTAAAGAAGATGAATGTACAGATAGACTAACAAAAGATTATTCAGATAATGAAGTATTAAATAATGAAATTCAGTGCTTGTATTGTAAAAATATGTTTAAAACACGAGAGATGTTTGAAAATCACAAAATGTTGTGTGATGGAGGAGAAATAGTTGTACAGAAGGCAAAAGAAGCTAATAATAATATGAATGATAAGGAATCCAATAATATAAAGATAATGAACTTTCAATTTATAACAAAAACTTGTAATGTTTGTCATGCAAATTTTGAAACTGAGAAACACTTAGTTGAACATAAACTTTCGTATTGTAAATTTCTTCAAGTAAAAGATTATCAAATTACTGATAAAATACTTATGAACAAAGAACAGTGCAATAATCATAAAGATTCCTACAATACCAATAATCCATCAATGGAAACCAATAAAAAATGTGGCCATTGTGGTTTGATTTATATTACTAAAAAGGAATTATTAAATCATATTATGGACTGTCATGAAGGTCAACTTCTATTTAAATGTATCATGTGTGATAGAAGCTATGAAAAGTGGTCTAGTTTAGATGTACATGAAGCCACTCACAGAATAGATAAACCTTATTTATGTGATTTATGTGGAAAGAGTTTTAAACATTCCAATAATTTAAGGGGTCATAAAAGAACTCATTTAGATGATTCAAAAAAGAAACGACACATTTGTGACATTTGTGGAAATGCATTTAGATCTAGATTTCATTTGGGAGAACATATGAATCAACATAATGGAAATAAACCTTACTCCTGTGAGAAGTGTGGCAAAGCTTTTTACAAAAGAATACAACTAAGACAGCATAAACTTTCTCATGGTTTGAATAAACATGTCTGTCCAATTTGTGGCACAGCTTTCAATCGTAAAGGAAACATGAATACACATCTTAAACGTCATAACAGTGGAGATGGTATATATACATGTAGCATATGTACACACACATGTAAATCAATGAGTGAGCTAAAGTTACATAGAAAAAAACATACAGAGCAAGACACTATAGAAAACATAGAAAAAAAACATATCGGTAAACCTACATGGAAATGTAAGAGTTGTGATCGAATATTTTCAACTCGAGCGGTATTATTAAATCATGAACGTACACATAAAGAAGATAGAATAAGTATCGATTGTAATATTTGTGGAAAAAAATTAGCAAGCAAAAATTCTCTGGTGTATCATAAAAAATCTATTCATTCTTCGGAGAGACCGTATATGTGTCAATATTGTGAAGAGTCGTTTGTGTCCAAAGAATCACGTCTTATACACGAAAGAATACATACCGGAGAACGTCCTTACGTTTGCAAAATATGTAAAATGGAATACAAATGTTCAAGCAATCTTAATCAACACATAAAAATTCATTCTGGGATTAAGCCTTATATGTGTATATATTGTAATAAAAGTTTCACGCGTAGAGGAACGTTAAATGTGCATGAGAGAATACATACTGGTGAGAAACCATTTGCTTGCGAAACGTGTGGTAGAACATTTTCTCAGAAAAATGACATGATCAAGCACACTAAAACACATAATGCCAAATCGTTGTCTTGTGAACAATGCAATGAAGTTTTTGCAAGAAAGAAAGATATCCTAAAGCATATTGCTATGCACGAACAAAATAATTCTATAATTCAGGAGTATGTAGAGATACAACAAGAAATAGAACCTTACAGTGTGGATATAGCATGCTCTGAATTTGAATAA
Protein Sequence
MKIVCAAKTCKYSLDNEDSTNVKFIHFPNSDTSKIWAHQCDRTDLLMKSNEELYSNYYICSHHIEDRYFINKTDPVIIDQHAIPTLFESDIVAGKDSKNVFDKNEQTEITDNVMLSYCDMDVGMDQYHEISIKFSNLCRICEEPCFDGIEIFSLKGIDLRLKEKISLHLPIMVDMEDIMPQKLCMNCYNKLEVAHSLVITSLRTDMRLKKFLNINAELNYDHKYSAIAKKCSLEIDEEMSMNETTDVPKEFSDLENTNVQKDSFQNSIRKEVQSELNSFIASHNEEIKEDECTDRLTKDYSDNEVLNNEIQCLYCKNMFKTREMFENHKMLCDGGEIVVQKAKEANNNMNDKESNNIKIMNFQFITKTCNVCHANFETEKHLVEHKLSYCKFLQVKDYQITDKILMNKEQCNNHKDSYNTNNPSMETNKKCGHCGLIYITKKELLNHIMDCHEGQLLFKCIMCDRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSKKKRHICDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCGKAFYKRIQLRQHKLSHGLNKHVCPICGTAFNRKGNMNTHLKRHNSGDGIYTCSICTHTCKSMSELKLHRKKHTEQDTIENIEKKHIGKPTWKCKSCDRIFSTRAVLLNHERTHKEDRISIDCNICGKKLASKNSLVYHKKSIHSSERPYMCQYCEESFVSKESRLIHERIHTGERPYVCKICKMEYKCSSNLNQHIKIHSGIKPYMCIYCNKSFTRRGTLNVHERIHTGEKPFACETCGRTFSQKNDMIKHTKTHNAKSLSCEQCNEVFARKKDILKHIAMHEQNNSIIQEYVEIQQEIEPYSVDIACSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00734082;
90% Identity
iTF_00215855;
80% Identity
-