Aio006958.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000006.1:17721445-17733116[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-79 1.3e-74 251.9 23.3 1 295 12 292 12 296 0.88 2 2 1 2.9e+04 -6.4 16.5 1 48 293 339 293 366 0.66
Sequence Information
- Coding Sequence
- ATGCAGTCTTGGTGTTTGACATCATCTGCGGAGGCGGAGCAACGTCTGGCTGCGCGGAGGGCCGCCAGAGCGGAGGCTCGAGAGATCCGCATGCGGGAGCTGGAGAGGCAGCAACGCGAACAAGAGGACCATGCCGACAAGGCCTATGATATGTATGCAGAGACGGTGGGGCGGCGTGCAGGCGGGCGGCTGGCAGCCCTCAGCCCGAGCGCTGTGCTTTCACCTCGGCGCAGTTCCGAAGACTCAGTTGTCGAAACATCCAGCATGAAAGACCTTAGGCACGAGTTGAAAGAGGTCGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGGTACCAGCTGGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAATACGCGCAGCTGCAGCGCGAGCACAAGGAGAAATGTTCAGCGCACGAGCGGTTAAAGCGCGAGCACGCGTCCCTCGAGCGCGAGGTGGAGGGAGCGCGCGGCGCCGTGATCGCGCGCGAGGCCGCCGCCGCGGCCGCGGGCTTCGCCTTCGTGGAGGCGGGCGCCGCTGGGGCGGAGCACCCTGAGCACAGCGGGCCGGTGCCGCCGCTCGCGCTTGTTTCACACCAGGCGCAAGCGATGCTCAACGACGCCGGGGAGGGCACTCTAGACGTCCGGTTGCAAAACCTGGTGAGCTCGAAGCAAGCGCTGGAGTCCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGAAGCGCGCGGCACAACGGCGTCGCCAACCACACCGACCAGGAGTACGAGAACGAACTGGAGACGCTGCGCAAGGCGGTGGCGGAGGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGGCGCTCGCGCGGCTCGAGGCGCAGGTGTCCAGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAGCAGGAGCGACGGCGGCTGCAGAGAGAGGCAAGAGAAGCCCTCAACCGAGTAGAAGAACTGGAAACCGAGAATAGTCATCTTACGAAACGTCTGGACAAACTCAAGAACGCAAAGTCAGCACTCCTGAAGGACCTGTGA
- Protein Sequence
- MQSWCLTSSAEAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPSAVLSPRRSSEDSVVETSSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLEREVEGARGAVIAREAAAAAAGFAFVEAGAAGAEHPEHSGPVPPLALVSHQAQAMLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERSARHNGVANHTDQEYENELETLRKAVAEAKGRAARAEAEAALQAAALARLEAQVSRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- iTF_00112516; iTF_00112515; iTF_01316370;
- 80% Identity
- -