Sjap005051.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_033032175.1
- Location
- CM065306.1:24070246-24079847[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-78 8.8e-74 249.7 19.5 1 297 16 299 16 302 0.88 2 2 2 4.3e+04 -5.9 15.6 1 48 298 344 298 363 0.71
Sequence Information
- Coding Sequence
- atgttgtgtgtaataaatgtaaataagggTTCGGTTACATTGCAGGCGGAACAGCGGCTGGCGGCGCGACGAGCGGCGCGGGCGGAGGCGCGGGAGATACGCATGCGCGAGCTGGAGCGTCAGCAGCGCGAGCAGGAGGATCATGCTGACAAGGCATATGACATGTATGCAGAGACGGTGGGACGGCGAGCCGGTGGGCGACTATCGGCCCTCAGTCCGGGCGGAGTACACTCCCCGAGGCGCAGTTCAGAAGACTCCACGGATGAGACTTTCAGTATTAAAGACCTCAGGCACGAGCTGAAGGAAGTCGAAGAGAAGTTCCGCAAGGCGATGATACTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAACTCGAACTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAATTACagCGCGAACACAAAGAGAAGTGTTCTGCACACGAGCGGTTAAAGCGCGAGCACGGGACCCTCGAGCGGGAGGTGGAGGGGGCGCGGGCGGCGGTGGTGGCGCGCGAGGCGGCCGCCGCCGCTGCGGGCTTCGCCTTCGTCGAGGCCGGCACTGCAGGGGCGGAGCTTCCCGGCGAGGGTTGCGGCCCGGTGCCCGCGTTAGCGCTCGTCTCGCATCAAGCACAGGCGCTGCTCAATGACGCCGGGGAAGGCACACTAGATGTCCGGTTGCAAAACCTTGTAAGCTCGAAGCAAGCGTTAGAGTCGGAAGTACGTAAGCTGAAGTTACAGCTGAACGACGAGCGTGCCGCCAGACAGAACGGTGTCGCGAACCACAACGACCAAGAGTATGAAAACGAACTGGAGACGCTACGTAAAGCGGTCGCGGAGGCGAAGGGTCGAGCGGCGCGGGCGGAGTCCGAGGCGGCGTTGCAGGCGGCCGCGCTCGCCCGCCTCGAGGCGCAGGTGACGCGTCTGCGCGCGCGGCAAGACCACCAGGACGAGCACGAGGAACAGCTGAAACAGGAGCGCCGCCGTCTGCAGAGAGAGgcGAGAGAAGCTCTCAACCGAGTCGAAGAGTTGGAGACGGAGAACAGCCACCTCACGAAACGTCTCGACAAGCTCAAGAACGCGAAGTCAGCGCTCCTCAAGGACCTGTGA
- Protein Sequence
- MLCVINVNKGSVTLQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLSALSPGGVHSPRRSSEDSTDETFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHGTLEREVEGARAAVVAREAAAAAAGFAFVEAGTAGAELPGEGCGPVPALALVSHQAQALLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNDERAARQNGVANHNDQEYENELETLRKAVAEAKGRAARAESEAALQAAALARLEAQVTRLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- iTF_00187184;
- 80% Identity
- -