Basic Information

Insect: Augochlora pura
Gene Symbol: -
Assembly: GCA_028453695.1
Location: CM052100.1:19536498-19539205[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.075 5.3 7.5 1.6 1 23 343 366 343 366 0.91

2 15 0.00043 0.031 14.6 0.8 1 23 372 396 372 396 0.92

3 15 8.3 5.9e+02 1.1 0.1 3 11 431 439 430 442 0.83

4 15 0.09 6.4 7.3 5.0 1 23 477 499 477 499 0.93

5 15 0.0027 0.19 12.1 0.5 1 23 506 529 506 529 0.92

6 15 0.00092 0.065 13.6 3.1 1 23 535 557 535 557 0.97

7 15 0.00018 0.013 15.8 2.4 1 23 563 585 563 585 0.99

8 15 1.2e-05 0.00084 19.5 2.2 1 23 591 613 591 613 0.98

9 15 0.00056 0.039 14.2 0.2 1 23 626 649 626 649 0.95

10 15 0.00016 0.011 16.0 3.4 1 23 665 688 665 688 0.96

11 15 0.00029 0.02 15.2 0.8 1 23 696 719 696 719 0.98

12 15 0.0006 0.043 14.1 0.7 1 23 725 747 725 747 0.97

13 15 0.00086 0.061 13.6 5.5 1 23 753 775 753 775 0.98

14 15 3.9e-06 0.00027 21.0 1.5 1 23 781 804 781 804 0.98

15 15 0.57 40 4.8 2.4 2 23 809 830 809 830 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.075	5.3	7.5	1.6	1	23	343	366	343	366	0.91
2	15	0.00043	0.031	14.6	0.8	1	23	372	396	372	396	0.92
3	15	8.3	5.9e+02	1.1	0.1	3	11	431	439	430	442	0.83
4	15	0.09	6.4	7.3	5.0	1	23	477	499	477	499	0.93
5	15	0.0027	0.19	12.1	0.5	1	23	506	529	506	529	0.92
6	15	0.00092	0.065	13.6	3.1	1	23	535	557	535	557	0.97
7	15	0.00018	0.013	15.8	2.4	1	23	563	585	563	585	0.99
8	15	1.2e-05	0.00084	19.5	2.2	1	23	591	613	591	613	0.98
9	15	0.00056	0.039	14.2	0.2	1	23	626	649	626	649	0.95
10	15	0.00016	0.011	16.0	3.4	1	23	665	688	665	688	0.96
11	15	0.00029	0.02	15.2	0.8	1	23	696	719	696	719	0.98
12	15	0.0006	0.043	14.1	0.7	1	23	725	747	725	747	0.97
13	15	0.00086	0.061	13.6	5.5	1	23	753	775	753	775	0.98
14	15	3.9e-06	0.00027	21.0	1.5	1	23	781	804	781	804	0.98
15	15	0.57	40	4.8	2.4	2	23	809	830	809	830	0.95

Sequence Information

Coding Sequence: ATGGATGCGTTGATATGTCGTTTATGCGGTATAAGTCTCGTAGGAGGGAAATGCAAAGATATCTTCGGAGAATCGTCTGACTTAATACAGAAAATAACAGAAGTTTTACCGATTTCAATATCTATCGATGATAATGGTTCAAAGCATATATGTTTGTCGTGCTATGATAAAATTATTCTTTGCTACAAGTTCATTGAGGATGTACTAGAATATTCGAAAGAATTACAGAATGACACGCAGATCAGATCTCTGTTCGACTTACCTAGAGAAATGACAGACTTCTCAAAGATTCATAGCGACGCTGTGTATACGTGTCCTAATTGTAAAACTGGTTTAATGATTTTATTGATCAGTAATTCTCAAGGCTGTGATTATACCTTTCAAATTGCACTAGCTATGATAAATCATCCGAAAAAGAAGCATATTTTAAAAGAAAAAAATATACAAATACATAAAAATTTAATACATTTAAATAGCATTAAGAATAACAATGTACATCTTAAAGATGCAAGTAAAGCAACAGACATAGAGGACATTGAAAATTCACATGATCAAGTGAGCCTTATGTTACCAGTGTTGCAACAAGAAGATGCAAATTGTTTTGATAGACCATCTGTCAGAGAGGATTCAGAGATAATGACACAGAAAAGAACAAAAAGAAAACTTGTTAAATCTGATTTCGATGAAGATTCAAGTAGTCTTGCAAAAGTACTGAAATTAAAAGAAATGTACAAGTCCGATGAAAATTTACTAGTCTATGACAATGACTCCACGAACTCCTTAATAAAGATTGAACCGGAAAGTGACAATGTTTGTGAAGCAGACAGTGAAACCGATGTTAAAAGTAATGAAGATTCGCACGCGAATCAATTGTATACGCTTGAAAAGGATGAACCACGAGAAGAAGAAAATGATATTTATAAATCGTGCTTGAAATATGTCTGTAAATTTTGTGGGGTACGTTATCTTTCCCATATGAAATACGAATTTCATATGGAGAGGCACAAATTAGATAAAATGTACAAATACATATGTACATTATGTAGTAAAGAAACAAGCAACGAAAACTTACTATGGGATCATTACTTTCACACTCATAAAAGTTTACAACGTTACATATGCACGGAATGCGGGAAATTATTTGCAAAAAGGTCCAGGTTAAATGGTCATCAGAAAATGTACAATCATACAGGTATGAAACAGATCCAAGTTAACTCTGGCGATGATGATATTAACAATGGCATACAGAAAGCTATAGCTGAAACTGAACAGGAGAAACTTTCTGCTAACTGTAGTCTTTGTGGAAAAGTAATCTCTGATTTCAATGCAGATGCTATTAATGATCTAGTTACGTGTGCCGACTGCGAAGACTCTACTCTATCGCTTATGGTAGATGGCAATGAAACAAAAGTAATTTCTCCTCGGCAATATCACTGCACTCAGTGCCCGAAACACTTTGTACGAAAAGAAAGGCTGGAGTTTCATGAAATGAGGCACAATGAAAATATGAACGAGTTCGTTTGCAGTACTTGCGGAAAAGAATTTAGAGCGGAGAACTCGTTGTACGAGCATTACCTTTTCGTTCACAAAGGCGCGAGGCCTCATATTTGCGAACTGTGCGGCAAATCGTTCCAGTTGAAAGCTAGACTGAAAGAACATCATCGAATTCATACAGGCGAGAAACCGTATCAATGCGACGTTTGCGGTCAGAAATGTAGAACCACGAACGCGTTGAAGCTACATCGGAAGATTCATTTCTCCAATAACAGGTATACCTGCAATGTGTGCAGTAAGTCGTTTAGTAAAAAACAGAATATGAACGAGCACTTGGAGAAGCATTGGAAAAACGATAAAAACGTGACGTTACCGCAAGTATTTAGATGTCCAATTTGTTTAGAAAACTTCCCGACGTATCGTATGCTAAAGTATCACATGATAGAAATTCATAAATTAAATAATCAGGATCCGATTCTGACGAAGCAAAAGCCATGGTACGAATGTGGAGAATGTCACGAGAAGTTTAAACATCAAATGTCTTTGAAAGCTCATAAAGAGAGAGTACACGAAGGGAGAGTAGACCCGCTCTATCAATGCGATACGTGTAACGCTACTTACAGGGTCAAGCAACTTTTAGTGAATCATATCAAGAGCAAACACAACGGCGAAAGGCGCTACAAGTGCGCGCAATGCGAAAAGGGATTCAACGATACGAAATCATTGTACAATCACGTACTGCTGCACACCGGAAAAAAGCCGTACGTTTGCGAATATTGTAACATGCGTTTCAGGAGAAAAGATTCTAGGGATCATCACCGTAGAAAACACACGGGCGAGCAACCCTATCAGTGTCCGGATTGCGGAGAATCGTTTTCCACGTATAACAATCGGTCCAAGCATCGGAAACGGGAACACGGGGAAGATCCTGAATGTCCCGAGTGTCGGGAGAAATGCAGCAGCCAACAGGAAGTTAGATTCCATTTGAATAAACATCTTGGAGAAAAATTGAAGGAGCTGCAAAGTACAAATACCGACAAGACATAG
Protein Sequence: MDALICRLCGISLVGGKCKDIFGESSDLIQKITEVLPISISIDDNGSKHICLSCYDKIILCYKFIEDVLEYSKELQNDTQIRSLFDLPREMTDFSKIHSDAVYTCPNCKTGLMILLISNSQGCDYTFQIALAMINHPKKKHILKEKNIQIHKNLIHLNSIKNNNVHLKDASKATDIEDIENSHDQVSLMLPVLQQEDANCFDRPSVREDSEIMTQKRTKRKLVKSDFDEDSSSLAKVLKLKEMYKSDENLLVYDNDSTNSLIKIEPESDNVCEADSETDVKSNEDSHANQLYTLEKDEPREEENDIYKSCLKYVCKFCGVRYLSHMKYEFHMERHKLDKMYKYICTLCSKETSNENLLWDHYFHTHKSLQRYICTECGKLFAKRSRLNGHQKMYNHTGMKQIQVNSGDDDINNGIQKAIAETEQEKLSANCSLCGKVISDFNADAINDLVTCADCEDSTLSLMVDGNETKVISPRQYHCTQCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKEFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGEKPYQCDVCGQKCRTTNALKLHRKIHFSNNRYTCNVCSKSFSKKQNMNEHLEKHWKNDKNVTLPQVFRCPICLENFPTYRMLKYHMIEIHKLNNQDPILTKQKPWYECGECHEKFKHQMSLKAHKERVHEGRVDPLYQCDTCNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCNMRFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEDPECPECREKCSSQQEVRFHLNKHLGEKLKELQSTNTDKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184107; iTF_00763401; iTF_00762728; iTF_00024790; iTF_00865494; iTF_00864808; iTF_00861370; iTF_00864139; iTF_00866861; iTF_00866181; iTF_00863438; iTF_00860634; iTF_00862748; iTF_00966171;
90% Identity: iTF_00184107; iTF_00966171;
80% Identity: -