Lvie018895.1
Basic Information
- Insect
- Lasioglossum vierecki
- Gene Symbol
- -
- Assembly
- GCA_028455595.1
- Location
- CM052336.1:15987575-15990257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8 6.7e+02 1.3 0.2 1 8 103 110 103 112 0.88 2 16 1.4 1.2e+02 3.6 1.3 1 23 311 333 311 333 0.90 3 16 0.02 1.7 9.5 1.7 1 23 341 364 341 364 0.92 4 16 0.002 0.17 12.6 2.2 1 23 370 394 370 394 0.92 5 16 0.11 8.8 7.2 4.8 1 23 476 498 476 498 0.93 6 16 0.0048 0.4 11.4 0.5 1 23 505 528 505 528 0.92 7 16 0.0022 0.18 12.5 2.9 1 23 534 556 534 556 0.97 8 16 2.4e-06 0.0002 21.8 0.6 1 23 562 584 562 584 0.98 9 16 1.8e-06 0.00015 22.2 1.3 1 23 590 612 590 612 0.98 10 16 0.048 4 8.3 1.1 1 23 625 648 625 648 0.91 11 16 2.1e-05 0.0018 18.8 1.3 1 23 664 687 664 687 0.96 12 16 0.00027 0.022 15.4 0.8 1 23 695 718 695 718 0.98 13 16 0.00066 0.056 14.1 0.7 1 23 724 746 724 746 0.97 14 16 0.0078 0.66 10.8 7.4 1 23 752 774 752 774 0.97 15 16 4.2e-06 0.00036 21.0 1.5 1 23 780 803 780 803 0.98 16 16 0.005 0.42 11.4 1.5 2 23 808 829 808 829 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGTTGATATGTCGTTTATGTGGTATAAATCTCGTAGAGAGCAAATGCAAGGCAATCTTTGACGAATCTGCTGACTTAATACACAAAATAACGGAAGTTTTACCAATTTTAATATCTATCGATGATAATGGTTCAAAGCATATATGTTTGTCATGCTACGATAAAATTACTCTTTGCTACAAATTCATTGGGGATGTAATCGAATATTCTAAAAGATCAGAGAACAGGGCGCAGATTAAACCTTTTTTTAACTTATCTAGAGAAGTAACAGACTTATCAAAGATTCACAGCGATGCTGTATACACTTGTCCCAATTGCAACACTGGTTTAATCATTTTATTAGTCAGTAATTCGCCAGACTACGAATACACCTTTCAAATTGCATTAGCCATGGTAAATCATTCAGGAAAGAAGCATATTTTAAGGGAAAATAATATACAAGGTCATAAGGATTTAATACATGTTAATAGAATTAAAAACAGCAATATACATCTCAAAGATGTAAGTAAAACAACAGACATAGAAGACATTCAAAATTCGTGTAAGCAAATGAGTCTCACGCTACCTGTGTTACAACAAGAAGACGCGAATTGTCTCGATAAACTACCTGTTAGAGAAGATTCAAAGATAACAACACAGAAGAAAACAAAAACAAAACTTGTTGAATCTGATTTTTCCAATGATTTAAGCAGTCTGTCGAAAGTACTAAAATTTAATGAGATATATGAATGTAATGAAAATTTAGCAGACTGTAACGATAACTCCGCAAACACTCTAATAGAGATTGAACCAAAAAGCGATAATACGTGCGAAGTAAACAGCGAAACTGATTATAAAAGCAACAAAGATGCACATGTAGATGAATCATATATGCTCGAAAAGGATGAGATGCAAGACAAAAATGGTATTTGTGACAGCTCGAAGTTTGTCTGTAAACTTTGCGGAGTACGTTATTATTTGCGTATGAAATATGAGTTTCATATGGAGCGGCACAAATTCGATAAAATGCATAAGTACGTGTGTACTGTCTGTAGCAAAGAGACAAGTAACGAAAAGTTATTATGGGATCATTACTTTCACACGCACAAAAGTCTACAACGATACGTATGTACGGAATGTGGGAAATTATATGCAAAAAAGTCTCGATTAAATGGTCACCAAAAAATGTGCAATCACAAAGGAGTAAAACGGATACAAATGAACCCTAGCGACGATAATGTTGATAAAGACGTGGACAAAGTTATACTACCTGCAACCGAACAAAGACCGTTTTTTGTAAACTGTATTCTTTGTGCAAAAGTAATCTCCGATTTCGATGGGGATGTTTTTAACGATCCAGTCAAATGCGTTGACTGCGAAGACTCGTCTCTTTCCCTTATGGTAGACGGGAATGAAACGATATTTATCTCTCCTCGGCAATATCATTGCTCTCAGTGCCCAAAACACTTTGTACGAAAAGAGAGACTAGAGTTCCACGAAATGAGGCACAAGGAGAACATGGACGAATTCGTTTGCAGTACCTGCGGCAAGGATTTTAGAGCAGAGAATTCGTTATATGAGCATTACCTTTTCGTTCACAAAGGCGCGAGGCCTCACATCTGCGAACTATGTGGCAAATCGTTTCAGTTGAAAACTAGATTGATTGAGCATCAtcgaattcatacgggcgaaagaccgtatcgatgcgaagtttgcgataaaaAATACAGAACCGCGGATGCCTTGAGACTCCATAGAAAAATCCATTTCTCCAATAACAGGTATACTTGTAACGTGTGCGATAAGTCGTTCAGTAAAAAACAGAATATGAACGAACATTTGGAGATGCATTGGAAAAACGATAAGAACGTGTCGTTACTACAAGTATTTAGATGCCCAATTTGTTTAGAAAATTTCCCAACGTATCGTACGTTAAAGTGTCACATGGTAGAAGTTCATAAATTGAATAATGAAGACCCAATCCTTACGAAACAAAAACCCTGGTACGAATGTGGAGACTGCGACGAAAAATTTAAGCATCAGATGTCTTTGAAAGCCCACAAAGAGAGGGTACACGAAGGCAAAGTAGACCCACTTTATCGATGCGATACGTGCGACGTCACTTACAGAGTTaaacagctcttagtgaatcatatcaagagcaaacataacggcgaaagacgctacaagtgtgcgcaatgcgagaaaggatttaacgatacgaaatctttgtacaatcatgtgctgttacacactggaaagaagccgcacgtttgtgagtattgtaacatgcgtttcaggagaaaagattccagagatcatcatcgtcgaaagcacactggtgaacaaccttatcagtgtCCAGATTGCGGGGAATCATTTTCTACTTATAATAATAGATCCAAGCATCGAAAACGCGAACACGAGGAAGATCCTGAATGTCCCGAGTGTAGGGAAAAGTGTAGCAGTCAGCAGGAAGTTAGAATACATTTGAATAAACATCTTGGAGAAAAATTAAAAGAATTACAATGTATAAATATTGAAGAAACATAG
- Protein Sequence
- MDVLICRLCGINLVESKCKAIFDESADLIHKITEVLPILISIDDNGSKHICLSCYDKITLCYKFIGDVIEYSKRSENRAQIKPFFNLSREVTDLSKIHSDAVYTCPNCNTGLIILLVSNSPDYEYTFQIALAMVNHSGKKHILRENNIQGHKDLIHVNRIKNSNIHLKDVSKTTDIEDIQNSCKQMSLTLPVLQQEDANCLDKLPVREDSKITTQKKTKTKLVESDFSNDLSSLSKVLKFNEIYECNENLADCNDNSANTLIEIEPKSDNTCEVNSETDYKSNKDAHVDESYMLEKDEMQDKNGICDSSKFVCKLCGVRYYLRMKYEFHMERHKFDKMHKYVCTVCSKETSNEKLLWDHYFHTHKSLQRYVCTECGKLYAKKSRLNGHQKMCNHKGVKRIQMNPSDDNVDKDVDKVILPATEQRPFFVNCILCAKVISDFDGDVFNDPVKCVDCEDSSLSLMVDGNETIFISPRQYHCSQCPKHFVRKERLEFHEMRHKENMDEFVCSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKTRLIEHHRIHTGERPYRCEVCDKKYRTADALRLHRKIHFSNNRYTCNVCDKSFSKKQNMNEHLEMHWKNDKNVSLLQVFRCPICLENFPTYRTLKCHMVEVHKLNNEDPILTKQKPWYECGDCDEKFKHQMSLKAHKERVHEGKVDPLYRCDTCDVTYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPHVCEYCNMRFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHEEDPECPECREKCSSQQEVRIHLNKHLGEKLKELQCINIEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00183460;
- 90% Identity
- iTF_00866861;
- 80% Identity
- -