Avir013798.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agapostemon virescens
Gene Symbol
-
Assembly
GCA_028453745.1
Location
CM052083.1:9932254-9934950[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.1 9.8e+02 1.3 0.2 1 8 103 110 103 112 0.88
2 16 6.3 8.7e+02 1.4 1.6 1 21 310 330 310 332 0.69
3 16 0.016 2.2 9.6 1.6 1 23 340 363 340 363 0.92
4 16 0.00041 0.057 14.6 0.8 1 23 369 393 369 393 0.92
5 16 0.093 13 7.2 4.8 1 23 475 497 475 497 0.93
6 16 0.0042 0.59 11.4 0.5 1 23 504 527 504 527 0.92
7 16 0.00089 0.12 13.6 3.1 1 23 533 555 533 555 0.97
8 16 0.00017 0.024 15.8 2.4 1 23 561 583 561 583 0.99
9 16 4.4e-06 0.00062 20.8 2.2 1 23 589 611 589 611 0.98
10 16 0.0014 0.19 12.9 0.2 1 23 624 647 624 647 0.91
11 16 2.9e-05 0.0041 18.2 1.4 1 23 663 686 663 686 0.96
12 16 0.00024 0.033 15.3 0.7 1 23 694 717 694 717 0.98
13 16 0.00058 0.081 14.1 0.7 1 23 723 745 723 745 0.97
14 16 0.00083 0.12 13.7 5.5 1 23 751 773 751 773 0.98
15 16 1.9e-06 0.00026 22.0 1.1 1 23 779 802 779 802 0.98
16 16 0.85 1.2e+02 4.2 2.4 2 23 807 828 807 828 0.94

Sequence Information

Coding Sequence
ATGGATGTGTTGATATGTCGTTTATGTGGTAAAAATCTCATAGAGGAAAAATGCAAAGCTATCTTTGAAGAATCAACTGATTTAATACATAAAATAACAGAAGTTTTACCAATTTCAATATCTGTTGAGGATAATGGTTCAAAACATATATGTTTGTCATGTTATGATAAAATTATTCTTCACTACAAATTCATCGGAGATGTAATTGAATATTCTAAAAAATCAGAGAATGGATCTGAGATAAAACCTTTTTTTAACTTATCCAAAGAAGTAAATGACTTTTCAAAGATTCATAGTGATGCTGTGTATACATGTCCCAATTGCAACACTGGTTTAATCATATTATTAGTCAGTAATTCGCCAGACTATGATTATACCTTTCAAATTGCATTAGCCATGGTGAATCATTCAGAGAAGAAGCATATTTTAAGAGAAAAAAGTGTACAAATGCATAAAAATTTAATACACTTTAATAGTATTAAGAACAACAATATACATTTGAAAGATATAAGTAAACCGACAGACATACAAGACATTGAAAATTCGCATAATCAAGTGAGCTTCACGTTACCTGTGTTACAACAAGAAGATGTAAATTGTCTCGATAAATTATCTGGTAGAGAAAATATAATAACACAGAAGAAAACAAAAAGAAAACTTGACGAATCAGATTTTTCCAATGATTCAAGTAGCCTGTCAAAAATACTAAAATTGAATGAGATATACAAATGTAATGATAATTTATTTGATTGTAACGAGGACTCTGAGAACACTTTAATAAAAATTGAAACAGAAAGCGATAATGTTTGTGAAGTAGACAGTGAAACTGATTGTAAAAGTAACAAAGATGCACATATAGATGAATCGCATACACTCGAACAGACTGAAATGCAAGAAGAAAATGATATTTATAAATCTTGCTTGAAATATGTCTGTAAACTCTGTGGAGTACGTTATCTCTCGCATATGAAATACGAATTTCACATGGAAAGGCACAAATTAGGTAAAATGTATAATTACGTGTGTACACTCTGTAATAAAGAGACAAGTAATGAAAACTTATTATGGGATCATTACTTTCACACACATAAGAGTCTGCATCGCTATATATGTACGGAATGTGGAAAATTATTTGCAAAAAGGTCTAGATTGAATGGCCACCAGAAAATGTATAGCCATAAAGGTGTGAGACAGATTGAAGTTAACTCTAGCGCCGATAATATTGATAAAGATGTTATAGAAAAAGCTATCGCTGCAACAGAACAAGAAAAACATTCTGTGAACTGTAATCTTTGTGGAAAATTAATCTTGGATTTCGACGCGGACGCTATCAATGATCTAGTCACTTGTGCTGACTGTGAAGACTCGACTCTTTCTCTCATGATAGATGGCAATGAAACGAAAGTAATTTCTCCTCGACAGTATCATTGCTCTCAGTGCCCAAAACACTTTGTACGAAAAGAGAGACTAGAATTCCACGAGATGAGACATAACGAGAACATGAACGAATTTGTTTGCAGTACTTGTGGAAAGGATTTCAGAGCAGAGAATTCGTTGTACGAGCATTACCTTTTCGTTCACAAAGGCGCAAGGCCTCACATCTGTGAACTATGTGGCAAATCATTTCAGTTGAAAGCTAGATTGAAAGAACATCATCGAATTCATACAGGCGAAAGGCCGTATCAATGCGATGTTTGCGGTCAAAAATGCCGAACTACGAATGCTTTGAAACTTCACAGGAAAATCCACTTCTCCAATAACAGGTATACTTGTAACGTGTGCAATAAGTCGTTCAGTAAAAAGCAGAACATGAACGAGCATTTGGAAAAGCATTGGAAAAACGATAAGAACGTGTCATTACCACAAATATTTAGATGTCCAATTTGTTTAGAAAATTTCCCAACATACCGTATGTTGAAGTATCACATGGTCGATGCTCATAAATTGAATAACCAAGACCCGATCCTTACAAAGCAGAAACCATGGTACGAATGCGGAGAATGCGACGAAAAATTTAAACATCAAATGTCTTTGAAAGCCCATAAAGAAAAAGTACACGAAGGTAGAGTGAACCCACTTTACCAATGTGATACTTGTAACGCTAGTTACAGAGTTAAACAACTCTTGGTAAATCATATCAAGAGCAAACATAACGGCGAAAGACGCTACAAGTGTGCACAATGCGAGAAAGGATTCAATGATACAAAATCATTGTATAATCATGTGCTGTTGCACACCGGTAAAAAGCCGTACGTTTGCGAGTATTGTAACATGCGTTTCAGAAGAAAAGATTCCAGGGATCATCATCGTAGAAAGCACACTGGTGAACAACCTTATCAGTGTCCAGATTGTGGGGAATCATTTTCTACTTATAATAATAGGTGGAAGCATCGAAAACGCGAACACGGGGAAGATCCTGAATGTCCTGAGTGTAGAGAAAAATGTAGCAGTCAGCAGGAAATTAGATTCCATTTGAATAAACATCTTGGAGAAAAATTAAAAGAATTACAATGTATAAATATTGACGAAACATAG
Protein Sequence
MDVLICRLCGKNLIEEKCKAIFEESTDLIHKITEVLPISISVEDNGSKHICLSCYDKIILHYKFIGDVIEYSKKSENGSEIKPFFNLSKEVNDFSKIHSDAVYTCPNCNTGLIILLVSNSPDYDYTFQIALAMVNHSEKKHILREKSVQMHKNLIHFNSIKNNNIHLKDISKPTDIQDIENSHNQVSFTLPVLQQEDVNCLDKLSGRENIITQKKTKRKLDESDFSNDSSSLSKILKLNEIYKCNDNLFDCNEDSENTLIKIETESDNVCEVDSETDCKSNKDAHIDESHTLEQTEMQEENDIYKSCLKYVCKLCGVRYLSHMKYEFHMERHKLGKMYNYVCTLCNKETSNENLLWDHYFHTHKSLHRYICTECGKLFAKRSRLNGHQKMYSHKGVRQIEVNSSADNIDKDVIEKAIAATEQEKHSVNCNLCGKLILDFDADAINDLVTCADCEDSTLSLMIDGNETKVISPRQYHCSQCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDVCGQKCRTTNALKLHRKIHFSNNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKNVSLPQIFRCPICLENFPTYRMLKYHMVDAHKLNNQDPILTKQKPWYECGECDEKFKHQMSLKAHKEKVHEGRVNPLYQCDTCNASYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCNMRFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRWKHRKREHGEDPECPECREKCSSQQEIRFHLNKHLGEKLKELQCINIDET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00183460;
90% Identity
iTF_00861370;
80% Identity
-