Aaur014993.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Augochlorella aurata
Gene Symbol
-
Assembly
GCA_028455555.1
Location
CM052148.1:1452085-1454772[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.7 6.2e+02 1.1 2.3 1 22 306 327 306 328 0.71
2 16 0.039 3.2 8.3 1.6 1 23 336 359 336 359 0.92
3 16 0.00045 0.036 14.4 0.6 1 23 365 389 365 389 0.91
4 16 4.3 3.5e+02 1.9 0.1 3 11 425 433 423 436 0.83
5 16 0.083 6.7 7.3 5.0 1 23 471 493 471 493 0.93
6 16 0.0024 0.2 12.1 0.5 1 23 500 523 500 523 0.92
7 16 0.00084 0.068 13.6 3.1 1 23 529 551 529 551 0.97
8 16 0.00016 0.013 15.8 2.4 1 23 557 579 557 579 0.99
9 16 4.2e-06 0.00034 20.8 2.2 1 23 585 607 585 607 0.98
10 16 0.00093 0.075 13.4 0.3 1 23 620 643 620 643 0.95
11 16 0.00014 0.012 16.0 3.4 1 23 659 682 659 682 0.96
12 16 0.00026 0.021 15.2 0.8 1 23 690 713 690 713 0.98
13 16 0.00055 0.045 14.1 0.7 1 23 719 741 719 741 0.97
14 16 0.00079 0.064 13.7 5.5 1 23 747 769 747 769 0.98
15 16 3.5e-06 0.00029 21.0 1.5 1 23 775 798 775 798 0.98
16 16 0.0042 0.34 11.4 1.5 2 23 803 824 803 824 0.97

Sequence Information

Coding Sequence
ATGGATCCATTGATATGTCGTTTATGCGGTATTAATCTCGTAGAGGGAAAATGCAAAGATATCTTTGAAGAATCATCTGACTTAATACAGAAAATAACAGAAGTTTTACCGATTTCAATATCTATTGATGATAATGGTTCGAAGCATATATGTTTGTCATGCTATGATAAAATTATTCTTTGCTACAAGTTCATTGAGGATGTACTAGAATATTCTAAAGAATTACAGAATGAGTCGCAGATAAGATCTCTGTTTGACTTATCTAGAGAAGTGGCAGACTTTTCAAAGATTCATAGTGATGCTGTGTATACATGTCCTAATTGTAAAACTGGTTTAATGATTTTATTAGTCAGTAATTCTCAAGGCTGTGATTATACCTTTCAAATTGCATTAGCTATGATAAATCATCCAGAAAAGAAACATATTTTAAAAGAAAAAAATATACAAATACATAAAAATTTAATACATTTGAATAATATTAAGAATAACAATGTACATCTTAAAGATGTAAGTAAAACGAGAGACATAGAAGACATTGAAAATGCACATGATCAAGTGAGTCTTACGTTACCGGTGTTACAACAAGAAGATGCAAATTGCTTTGATAGACCATCTGTTAGAGAGGATTCGGAAATAATGACACAAAAAAGAATAAAAAGGAAACTTGTTGAATCCGATTTTTATGAAGATTCAAGTAGCCTCACAAAAGTACTAAAATTAAAGGAAATGTATGAGTCTAATGAAAATGTATTGGTCTGCAACAATGACTCCACGAACACTTTAATAAAGATTGAACCAGAAAGTGACAATGTTTGCGAAGCAGACAGTGAAACTGATATTAAAAGTAACGAATTGCACACGCTTGGAAAGGATGAAACACAAGAAGAAAATGATATTTATAAATCTTGCTTGAAATATGTCTGTAAATTTTGTGGTATACGTTATCTTTCCCATATGAAATACGAATTTCATATGGAGAGGCACAAATTAGATAAAATGTACAAGTACGTATGTACATTATGTAGTAAAGAAACAAGCAACGAGAACTTACTATGGGATCATTACTTTCACACTCATAAAAGTTTACAACGTTACATATGTACAGAATGCGGCAAATTATTTGCGAAAAGGTCTAGACTAAATGGTCATCAAAAAATATACAATCATAAAGGTGTGAAACAGATCGAAGTTAATTCCGGCGATGATAATATTAACAATGATATTATACAAAAAGCTATAGCTGAAACTGAACAGGAGAAACTTTCTGTGAACTGTAATCTTTGTGGAAAAGTAATCTCTGACTTCAATACAGATGCTATTAATGATCTAGTTACATGTGCTGACTGCGAAGACTCTACTCTTTCTCTTATGGTAGACGGCAATGAAACAAAAGTAATCTCTCCTCGACAATATCACTGCACTCAGTGCCCGAAACACTTTGTACGAAAAGAACGACTAGAGTTTCATGAAATGAGGCACAATGAAAACATGAATGAATTCGTTTGCAGTACTTGTGGAAAAGAATTTAGAGCGGAGAATTCGTTATACGAGCATTACCTTTTCGTTCACAAAGGCGCGAGGCCTCATATTTGCGAATTATGCGGCAAATCGTTCCAGTTAAAAGCTAGGCTGAAAGAACATCATCGAATTCATACAGGCGAAAAACCGTATCAATGTGACGTTTGTGGTCAAAAATGTAGAACCACGAACGCCTTAAAACTACATCGGAAGATTCATTTCTCCAATAACAGGTATACTTGCAACGTCTGCAATAAGTCGTTCAGTAAAAAACAGAATATGAACGAGCACTTAGAGAAGCATTGGAAAAACGATAAAAACGTGACATTACCACAAGTATTCAGATGTCCAATTTGTTTAGAAAACTTCCCGACGTTTCGTATGCTGAAGTATCATATGATCGAAATTCATAAATTGAACCACCAGGACCCGATTCTTATGAAACAAAAGCCGTGGTACGAATGCGGAGAGTGTCACGAAAAGTTTAAACATCAAATGTCTTTAAAAGCGCACAAAGAGAGGGTACACGAAGGGAGAGTAGACCCGCTCTATCAATGCGATACGTGTAACGCTACTTACAGAGTCAAGCAACTTCTAGTGAATCATATCAAGAGTAAACACAACGGCGAAAGGCGCTACAAGTGCGCCCAATGCGAAAAGGGATTCAATGATACAAAATCTTTGTACAATCACGTGCTGTTGCATACTGGAAAAAAGCCATACGTTTGCGAATATTGTAACATGCGTTTCAGAAGAAAAGATTCCAGGGATCATCACCGTAGAAAACACACGGGCGAGCAACCTTATCAGTGTCCAGATTGCGGAGAATCGTTTTCTACGTATAATAATCGGTCCAAGCATCGGAAACGGGAACACGGGGAAGACCCTGAATGTCCTGAGTGTCGGGAAAAATGTAGCAGCCAACAGGAAGTTAGAATCCATTTGAATAAACATCTTGGAGAAAAATTAAAGGAACTACAAAGTATAAATACCGACGAGACATAG
Protein Sequence
MDPLICRLCGINLVEGKCKDIFEESSDLIQKITEVLPISISIDDNGSKHICLSCYDKIILCYKFIEDVLEYSKELQNESQIRSLFDLSREVADFSKIHSDAVYTCPNCKTGLMILLVSNSQGCDYTFQIALAMINHPEKKHILKEKNIQIHKNLIHLNNIKNNNVHLKDVSKTRDIEDIENAHDQVSLTLPVLQQEDANCFDRPSVREDSEIMTQKRIKRKLVESDFYEDSSSLTKVLKLKEMYESNENVLVCNNDSTNTLIKIEPESDNVCEADSETDIKSNELHTLGKDETQEENDIYKSCLKYVCKFCGIRYLSHMKYEFHMERHKLDKMYKYVCTLCSKETSNENLLWDHYFHTHKSLQRYICTECGKLFAKRSRLNGHQKIYNHKGVKQIEVNSGDDNINNDIIQKAIAETEQEKLSVNCNLCGKVISDFNTDAINDLVTCADCEDSTLSLMVDGNETKVISPRQYHCTQCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKEFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGEKPYQCDVCGQKCRTTNALKLHRKIHFSNNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKNVTLPQVFRCPICLENFPTFRMLKYHMIEIHKLNHQDPILMKQKPWYECGECHEKFKHQMSLKAHKERVHEGRVDPLYQCDTCNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCNMRFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEDPECPECREKCSSQQEVRIHLNKHLGEKLKELQSINTDET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00183460;
90% Identity
iTF_00183460;
80% Identity
-