Lmal006111.1
Basic Information
- Insect
- Lasioglossum malachurum
- Gene Symbol
- -
- Assembly
- GCA_028455605.1
- Location
- CM052316.1:4813635-4816299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8 6e+02 1.3 0.2 1 8 103 110 103 112 0.88 2 17 7.2 5.3e+02 1.5 1.6 1 21 304 324 304 326 0.69 3 17 0.047 3.5 8.3 1.6 1 23 334 357 334 357 0.92 4 17 0.00063 0.047 14.2 1.5 1 23 363 387 363 387 0.92 5 17 4.8 3.6e+02 2.0 0.1 3 11 423 431 421 434 0.82 6 17 0.11 7.9 7.2 4.8 1 23 470 492 470 492 0.93 7 17 0.0048 0.36 11.4 0.5 1 23 499 522 499 522 0.92 8 17 0.001 0.075 13.6 3.1 1 23 528 550 528 550 0.97 9 17 0.001 0.076 13.6 3.3 1 23 556 578 556 578 0.99 10 17 2.6e-06 0.00019 21.7 1.8 1 23 584 606 584 606 0.98 11 17 0.0013 0.096 13.2 0.2 1 23 619 642 619 642 0.93 12 17 3.1e-05 0.0023 18.3 1.3 1 23 658 681 658 681 0.96 13 17 0.00032 0.023 15.2 0.8 1 23 689 712 689 712 0.98 14 17 0.00067 0.049 14.1 0.7 1 23 718 740 718 740 0.97 15 17 0.00095 0.07 13.7 5.5 1 23 746 768 746 768 0.98 16 17 4.3e-06 0.00032 21.0 1.5 1 23 774 797 774 797 0.98 17 17 0.005 0.37 11.4 1.5 2 23 802 823 802 823 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGTTGATATGTCGTTTATGTGGTACAAATCTCATAGAGGGAAAATGCAAAGCTATCTTTGAGGAATCGACTGACTTAATACACAAAATAACAGAAGTTCTACCGATTTCAATATCTATCGATGATAATGGTTCAAAGCATATATGTTTGTCATGCTATGATAAAATTATTCTTTGCTACAAATTCATTGGAGATGTAATCGAATATTCTAAAAGATCAGAGAACGGGGCGCAGATTAAATCTTTTTTTAACTTATCTAGAGAAGTAACAGACTTTTCAAAGATTCACAGCGATGCTGTGTATACGTGTCCCAATTGCAACACTGGTTTGATCATTTTATTAGTCAGTAATTCTCCGGACTACGATTATACCTTTCAAATTGCATTAGCCATGGTAAATCATTCAGGAAAGAAGCATATTTTAAGAGAAAAGAATATACAAGTACATAAAAATTTAATACATTTTAATAGTACTAAGAACAGCAATATACATCTCAAAGATGTAAGTAAAACAACAGACATAGAAGACATTGAAAATTCATGTAATCAAGTGAGTCTCACATTACCTGTGTTACAACAAGAAGATATGAATTGTCTTGATAAACTATCTGTTAGAGAAGATTCAGAGATAACAACACAGAAGAAAACAACAATAAAACTTGTTGAAACTGATTTTTCTAATGATTCGAGCAGTCTGTTGAAAGCACTAAAATTTAATGAAATGTATGAATCTAATGACTCCAGGAACACTCTAATAAAGATTGAACCAGAAAGCGATAATGCGTGCGAAGTAGACAGTGAAACTGATTGTAAAAGCATCGAAGATGCACATATCGACGAATTATATACGCTCGAAAAGGATGAGACACAAGACAAAAACGATATTTATAAATCTTGCTTGAAGTATGTCTGTAAACTTTGCGGAGTACGTTATCTTTCGCATATGAAATATGAGTTTCATATGGAGAGGCACAAATTAGGTGAAATGTATAAGTACGTATGTACGCTCTGTAGCAAAGAGACAAGTAACGAAAACTTATTATGGGATCATTACTTTCACACACATAAAAGTCTACAACGTTACATATGTACAGAATGTGGGAAATTATTTACGAAAAAGACTCGATTAAATGGCCACCAGAAAATGTACAGCCATAAAGGAGTAAAACAGATTCAAGTTAACTCTAGCGGCGATAATATTGATAAAGACGTTATAGAAAAAGTTATAGCTGTAACCAAACAAGAAAAGCTTTCTGTAAACTGTAATCTTTGTGGAAAAGTAATCTCTGATTTTGATGGGGATGCTATTATCAATGATCTAGTCACTTGCGCTGACTGCGAGGATTCGACTCTTTCCCTTATGGTAGACGGGAATGAAACAAAAGTAATCTCACCTCGGCAATATCATTGCTCTCAGTGCCCGAAACACTTTGTACGAAAAGAGAGACTAGAGTTCCACGAAATGAGACATAACGAGAACATGAATGAATTCGTTTGCAGTACCTGTGGAAAGGATTTTAGAGCAGAGAATTCGTTATACGAGCATTACCTTTTCGTTCACAAAGGCGCGAGGCCTCACATCTGCGAACTATGTGGAAAATCGTTTCAGTTGAAAGCTAGATTGAAAGAACATCATCGAATTCATACAGGCGAAAGACCGTATCAATGCGATGTTTGCAATCAAAAATGCAGAACCACGAACGCCTTGAAACTCCACAGAAAAATCCATTTCTCCAATAACAGGTATACTTGTAACGTGTGCGATAAGTCGTTCAGTAAAAAACAGAATATGAACGAGCATTTGGAGAAACATTGGAAAAATGATAAGAACGTGTCGTTACCACGAGTATTTAGATGTCCAATTTGTTTAGAAAATTTCCCAACATATCGCATGTTGAAATATCACATGGTCGAAATTCATAAATTGAATAACCAAGACCCAATTCTTACGAAGCAGAAACCATGGTACGAATGCGGAGAATGCGACGAAAAATTTAAACATCAAATGTCTTTGAAAGCCCACAAAGAGAGGGTACACGAAGGCAGAGTAGACCCACTTTATCGATGCGATATGTGTAACGCCACTTACAGAGTTAAACAGCTCTTAGTGAATCATATCAAGAGCAAACATAACGGCGAAAGACGCTACAAGTGTGCGCAATGCGAGAAAGGATTTAACGATACAAAATCTTTGTACAATCATGTGCTGTTACACACTGGAAAGAAGCCGTACGTTTGCGAGTATTGTAACATGCGTTTCAGGAGAAAAGATTCCAGGGACCATCATCGTCGAAAGCACACTGGTGAACAACCTTATCAGTGTCCTGATTGCGGAGAATCATTTTCTACTTATAATAATAGATCTAAGCATCGAAAACGCGAACATGGGGAAGATCCTGAATGTCCTGAGTGTAGGGAAAAGTGTAGCAGTCAGCAGGAAGTTAGGATCCATTTGAATAAACATCTTGGAGAAAAATTAAAAGAATTACAATGTATAAATATTGAAGAAACATAG
- Protein Sequence
- MDVLICRLCGTNLIEGKCKAIFEESTDLIHKITEVLPISISIDDNGSKHICLSCYDKIILCYKFIGDVIEYSKRSENGAQIKSFFNLSREVTDFSKIHSDAVYTCPNCNTGLIILLVSNSPDYDYTFQIALAMVNHSGKKHILREKNIQVHKNLIHFNSTKNSNIHLKDVSKTTDIEDIENSCNQVSLTLPVLQQEDMNCLDKLSVREDSEITTQKKTTIKLVETDFSNDSSSLLKALKFNEMYESNDSRNTLIKIEPESDNACEVDSETDCKSIEDAHIDELYTLEKDETQDKNDIYKSCLKYVCKLCGVRYLSHMKYEFHMERHKLGEMYKYVCTLCSKETSNENLLWDHYFHTHKSLQRYICTECGKLFTKKTRLNGHQKMYSHKGVKQIQVNSSGDNIDKDVIEKVIAVTKQEKLSVNCNLCGKVISDFDGDAIINDLVTCADCEDSTLSLMVDGNETKVISPRQYHCSQCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDVCNQKCRTTNALKLHRKIHFSNNRYTCNVCDKSFSKKQNMNEHLEKHWKNDKNVSLPRVFRCPICLENFPTYRMLKYHMVEIHKLNNQDPILTKQKPWYECGECDEKFKHQMSLKAHKERVHEGRVDPLYRCDMCNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCNMRFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEDPECPECREKCSSQQEVRIHLNKHLGEKLKELQCINIEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00183460;
- 90% Identity
- iTF_00861370;
- 80% Identity
- -