Basic Information

Insect: Atta colombica
Gene Symbol: stc
Assembly: GCA_001594045.1
Location: NW:452354-457510[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 7.6e+03 -3.7 1.1 15 19 482 486 481 486 0.82

2 14 0.13 6.4e+02 -0.3 0.2 4 10 515 521 514 523 0.94

3 14 1.3e-06 0.0062 15.7 11.4 3 18 531 546 530 547 0.94

4 14 6.4e-09 3.2e-05 23.0 17.2 1 18 583 600 583 601 0.98

5 14 2e-07 0.00098 18.3 13.2 3 19 641 657 639 657 0.92

6 14 0.99 4.9e+03 -3.1 0.7 5 10 686 691 686 691 0.94

7 14 8.5e-05 0.42 9.9 12.4 4 18 704 718 697 719 0.86

8 14 2 9.9e+03 -4.6 1.6 5 10 748 753 748 753 0.90

9 14 0.0083 41 3.5 11.3 1 11 759 769 759 781 0.88

10 14 1.7e-08 8.3e-05 21.7 12.9 1 18 786 803 786 804 0.97

11 14 0.39 1.9e+03 -1.8 0.7 5 10 832 837 831 837 0.94

12 14 1.1 5.3e+03 -3.2 5.9 10 19 851 861 849 861 0.80

13 14 1.3e-06 0.0066 15.6 10.2 1 16 897 912 897 923 0.86

14 14 3e-06 0.015 14.5 12.5 1 19 929 948 929 948 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	7.6e+03	-3.7	1.1	15	19	482	486	481	486	0.82
2	14	0.13	6.4e+02	-0.3	0.2	4	10	515	521	514	523	0.94
3	14	1.3e-06	0.0062	15.7	11.4	3	18	531	546	530	547	0.94
4	14	6.4e-09	3.2e-05	23.0	17.2	1	18	583	600	583	601	0.98
5	14	2e-07	0.00098	18.3	13.2	3	19	641	657	639	657	0.92
6	14	0.99	4.9e+03	-3.1	0.7	5	10	686	691	686	691	0.94
7	14	8.5e-05	0.42	9.9	12.4	4	18	704	718	697	719	0.86
8	14	2	9.9e+03	-4.6	1.6	5	10	748	753	748	753	0.90
9	14	0.0083	41	3.5	11.3	1	11	759	769	759	781	0.88
10	14	1.7e-08	8.3e-05	21.7	12.9	1	18	786	803	786	804	0.97
11	14	0.39	1.9e+03	-1.8	0.7	5	10	832	837	831	837	0.94
12	14	1.1	5.3e+03	-3.2	5.9	10	19	851	861	849	861	0.80
13	14	1.3e-06	0.0066	15.6	10.2	1	16	897	912	897	923	0.86
14	14	3e-06	0.015	14.5	12.5	1	19	929	948	929	948	0.97

Sequence Information

Coding Sequence: ATGGCCACCTGGAACGGTTCGTATCCGGAAGACCTGAATTGCTTGATGTACGACGACCGGAATGCAGCAGACGTTCCCGCTACCGCGGGGAATTGGTCGTACTTTGTTGAGAACAACGCATACCTAGGCGATATACCTCACGTATCCACTGGAGGTTACTATCCTAGAGCTAGGGGCGATCGGCAAGTCTACGAGCAGAGCGGACCAACAACGGCTTATTACCAAGACGACTGCCAGTATCCGTCGAATATGGTGCCTTTGAAGAACAATGCCTATCAGGAACGTGTACTGCCAGACACCTTGTTCTCGGATAACACGGGAGCGTCGAACGGCGGAGTCTCGACGTCGCACAACGCGCCATCCTTCTCCCGTAGCGGTTACAGACCAAGATTTAGGGGTAACCGGATGGCCGGCAAGCATGCGCCATCGTTGTCGGCGGGCGACGTCGTCCAGTCCACCGTAGTGGAGAACTCTAATTTGCATCCTATAGCCAATGAATTTGTATCGAACAACCAGGGTAGATTCCGAAAAGATAACAGATTCAAGAAGTATGATAACGGTAATCCGAGTGGTTTCAATACGCAAGAATTCAGACCAAAGTCAGCCTCGTCGGACAACAAAGGTGAGAGACATTACGACAACAGAAGAGATGCCAATTATAGACAGAAGAAACCACAGAATATGCAGACTTCATCGAGATTTGGCTACAGGGATACTCCTAGAACACAATACAACGCgagaaactataataaatttcagaacagcaaatattacaataagaaGTATCAGTCAAATGTACCTCCAACTGGACAGAATGCTGCTAGAGAAGTTTGTACAACTATAACTGAAGCTGTTAATTCAGCCATGTCTAGTAGTCAAGAAAATAAGACTTTTGGTGAGGATGTTCAAGAAGATGACTCATTTTCGAGTACAAAAATCAATAGAAGTAGAGAAGAGATGCACGAAGATAACGATTCAGAAAATATGTTTTCGAGAAATCAAGAAGCACCACGAAATGGTAGAGTTAAGCGATTTGCTAGTGCGTCCAATTATCATAGATACAATTCGAACGATATGCAATCTGAATCTGGTACCAGCCGTAAAACAATAACAGCAAAGTATACACAAAGAAGAAACAATgagatgataaattataaggaGAAGAAAATGGCAAATTGGAGAGATAAGACAGAAAGTAATGAGACAGTGCATGCATCTCAgggaaaaaattacaagaaaaaatatgatattgATGACGACTCGAGCCAGAGGGAAAGATTAACTGAGCAGTTGAACAAAGGAACATTGGAATGTCTGGTTTGTTATGAGCATATTAAGCAAAGCGATTATGTTTGGTCTTGCAGCAATTGTTATCAcgtattgcatttaaaatgcaTCAAAAAATGGGCCAAGTCCTCTCAGAGTGaaaataacaGTTGGAAGTGTCCGGCTTGTCGGGATGTTAGTTTCCTCGTGCCTGAGGATTACTTCTGCTTCTGTGGAAAAATGAAGATGCCAGAGTGGAATCGCAGAGACGTAGCACATTCGTGTGGCGAGATTTGTGGTCGTTATCTATCCAAGAATAATTGTATGCACAAATGCAACCTGCTTTGCCATCCTGGCTCTTGTCCACAGTGCGTGGCAATGGTAACAAAGTATTGCGGATGCGGGAGAACATCGAAAATGCTTCTATGTAGCGTTCAACAATGGTTAATATGCGATTCAGTATGCAAAAAAGATCTGTCGTGCGGCAAGCACACCTGTCAGAAAAAGTGTCATCAGGGAGAGTGCGGACCTTGCGACAAAATTGTACAACAAacaTGTTTTTGTAGTAAGAAAATTCAGGAGGTACCTTGCCGAGCCAATGTCGCAGATAAATTTTCCtgtgataatatttgtaataaaacattGGACTGTAAGAAACATTATTGTCAGAAAGTTTGTCATCCAGGATCCTGCGAGCCCTGTTCTTTGACGCCTGAAAGAGTTACAATGTGTTGTTGTGGTCAAACACCGTTAacggaaaagagagagagttgTATGGATCCTGTGCCGACTTGCGATAAAATCTGCTCAAAGCGCTTGAAATGCGGCCAACCTAGTAATCCACACATCTGCAAGGCACCATGTCACTTGGGGGAATGTCCGGAATGTGACTTAAATACTGATGTCAAGTGCCGTTGCGGAAACATGGACCGTGAGATCGCTTGCAAGGATTTAACAAGTAAAGCCGATGATGCGCGCTGCGAGAAACGCTGCAAAAAGAAGAGAACCTGCGGTAAACATAATTGTAATCAGCTATGCTGCATTGATATCGAACACATCTGTCCGTTACCTTGTTCAAAGACTTTAAGCTGTGGTCGGCACAAGTGTCAAGAAAGATGTCATATAGGCAAATGTTCGCCTTGCTTGGAGAGCAGTTTTGAAGAATTGTATTGTGAATGCGGCGCTGAGGTGATTTATCCACCAGTACCATGCGGTACAAGAAGACCTACTTGTAATCGACCGTGTTCGCGCGAACATCTCTGTGACCATGAGGTGTTGCACAACTGCCATAGCGAATCCACATGTCCACCTTGCAGCGTCTTGACTCAGAGATGGTGCCACGGCAGACATGAACTCAGGAAGGCAGTGCCGTGTCATGTGAAAGAGATCTCGTGTGGTCTGTCGTGTAATAAGCCATTGACATGTGGACGGCATAAATGTATCACAATGTGCCACGCTGGAGCCTGCGAGAAACCTGGACAACAGTGCATTCAACCTTGCACTACAATGAGAGAACTCTGCGGACATATCTGTGCTGCTCCGTGTCACAAAGGCAAATGTCCAGATATGCCTTGCAAAGAGATGGTCAAggtTACATGCCAGTGTGGACATAGGACTATGAGTCGTGTCTGTGCAGATAATGCACGAGAATATCAAAGGATAGCAAGCAATATATTGGCTAGTAAGATGGCCGATATGCAACTCGGTCACTCTGTCGATTTAGAAGAAGTGTTCGGGCAAGGTGCGAAAAAGCAGAATCAGTTAAAGACTTTGGAATGTAACGATGAGTGTAAGACAATAGAAAGAAACAGAAGACTCGCATTAGGACTGCAGATCGCTAATCCAGACTTAAGTGGCAAATTAATGCCCAGATATAGCGATTATATGAAACAGTGGGCTAAAAAAGACCCGCATTTCTGTCAAATGGTTCACGACAAGTTGACGGAATTAGTGCAGTTAGCAAAGACATCCAAACAAAAATCCCGGAGTTACTCATTTGAAGTTATGAACAGAGAAAAGCGTCATTTTGTGCACGAGTCGTGTCAGCATTTTGGCTGCGAAAGTCAAGCATATGATGAAGAGCCAAAGAGAAATGTTGTTGCTACTGCCGTAAAAGATAAGTGTTGGTTACCAAGCTACAGTTTACTAGAAATGatacaaagagagaaaggacAAAGAAAGGTTCCAGGTCCAGTACTTAATACTTCGAAGGGAAATAATTCTACAAAGACTGTTCTTTCGTTACCTGTAAAACAGAATCAGCAATTGCTGCCATCGTCAACTCCTAAAACTGCTGACAaagaaatagattattttgacTATCGAGATTAA
Protein Sequence: MATWNGSYPEDLNCLMYDDRNAADVPATAGNWSYFVENNAYLGDIPHVSTGGYYPRARGDRQVYEQSGPTTAYYQDDCQYPSNMVPLKNNAYQERVLPDTLFSDNTGASNGGVSTSHNAPSFSRSGYRPRFRGNRMAGKHAPSLSAGDVVQSTVVENSNLHPIANEFVSNNQGRFRKDNRFKKYDNGNPSGFNTQEFRPKSASSDNKGERHYDNRRDANYRQKKPQNMQTSSRFGYRDTPRTQYNARNYNKFQNSKYYNKKYQSNVPPTGQNAAREVCTTITEAVNSAMSSSQENKTFGEDVQEDDSFSSTKINRSREEMHEDNDSENMFSRNQEAPRNGRVKRFASASNYHRYNSNDMQSESGTSRKTITAKYTQRRNNEMINYKEKKMANWRDKTESNETVHASQGKNYKKKYDIDDDSSQRERLTEQLNKGTLECLVCYEHIKQSDYVWSCSNCYHVLHLKCIKKWAKSSQSENNSWKCPACRDVSFLVPEDYFCFCGKMKMPEWNRRDVAHSCGEICGRYLSKNNCMHKCNLLCHPGSCPQCVAMVTKYCGCGRTSKMLLCSVQQWLICDSVCKKDLSCGKHTCQKKCHQGECGPCDKIVQQTCFCSKKIQEVPCRANVADKFSCDNICNKTLDCKKHYCQKVCHPGSCEPCSLTPERVTMCCCGQTPLTEKRESCMDPVPTCDKICSKRLKCGQPSNPHICKAPCHLGECPECDLNTDVKCRCGNMDREIACKDLTSKADDARCEKRCKKKRTCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHIGKCSPCLESSFEELYCECGAEVIYPPVPCGTRRPTCNRPCSREHLCDHEVLHNCHSESTCPPCSVLTQRWCHGRHELRKAVPCHVKEISCGLSCNKPLTCGRHKCITMCHAGACEKPGQQCIQPCTTMRELCGHICAAPCHKGKCPDMPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKTIERNRRLALGLQIANPDLSGKLMPRYSDYMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFEVMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEMIQREKGQRKVPGPVLNTSKGNNSTKTVLSLPVKQNQQLLPSSTPKTADKEIDYFDYRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: iTF_00181665; iTF_00182982; iTF_01476620; iTF_00015745; iTF_00017026; iTF_00015083; iTF_01262147; iTF_00016391; iTF_01477270; iTF_01477983;
80% Identity: -