Apag006462.2
Basic Information
- Insect
- Arge pagana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963969455.1
- Location
- OZ018310.1:8762435-8767057[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.4e-115 8.3e-111 370.0 32.9 1 300 29 334 29 334 0.97 2 3 0.008 70 2.5 2.7 122 171 334 383 332 386 0.91 3 3 0.076 6.7e+02 -0.7 5.6 193 238 364 408 346 409 0.61
Sequence Information
- Coding Sequence
- ATGGAGTCTTTGGTGGCAGGACGGAGACGAACTGCCACTAGGCATTCAGCCGAGGATCAAGCTCTTGATCAAATTGCCAAAGAGGCAGAAGCTAGATTAGCAGCCCGCAGACAAGCCAGGGCAGAAGCTAGAGAAATCCGAATGCGGGAATTGGAGAGACAGCAGAAAGAAGCGGAAGAAAATGCTGATAGAGTCTATGATATGTGTACTGATTCATTTTCAGCGGATGCCAATCGAAGTATGAGGGTCACACCAGATCCCGTGAGGACTTCCCGAATTCTCACcaattccaacaattttcaatccaGTCGAAGATCGTCAGAGGATTCCTTAGAAGATGCCGGTCTCAGTAGAGATCTCAGGTTAGAACTCAAggaatttgaggaaaaattccGTAAAGCTATGATAACTAATGCCCAATTGGATAACGAAAAGTCAACCTATTCGTATCAAGTAGACTTATTGAAAGATAAATTGGAAGAACTAGAAGAAACAACTGCACAGTTGAGACGAGAacttagagaaaaaaatcgggaagcCGAACAACTGAAACGTGTAAGCCAACGGTTGAAAGAAGACTTGGATGTATGCAGAGTACAATTATTGGAACGAGACACGCTCATACAgGAAAATGGTTTAGTGATAGTGGAAGATGAGCGTGATGAAGATGATGCCGAGATGTCGAATGGACCGGAAAATGGGCCTTGTCCAAGAAAAAGGGTACTCGTTAGTATGGAAAGCGCTGAGGCGTTGCAGAATGCCGGGGAAGGGTCTCTAGACGTACGGCTTAGGAAATTTGCCTGCGAAAAAAAGGAGCTGCAAGATGAAATTCGACACTTGAGGTTGGAATTAGAAGATGCAAAGAATCGCGTGAGATCAGAAAGGTCACCTGGATCGATGTTAGgCCACTTAACAGATTCTGAAGATATTCAACGAGAAGCTAACAAGCATTTAGCTGATTATAAATTCAAATTGCAAAAAGCCGAACAAGACATGTCAACGTTACAAGCGACAGTTGCACGATTAGAGAGTCAAGTGATTCGATACAAATCAGCTGCAGAGACGTCCGAAAAAGCGGAGGACGAATTAAAGGTGGAAAAGCGAAAATTGCAGCGAGAAGTACGAGAATCACAAGGGCGAGTGGAGGAACTCGAAACAGCAAATTCTCATTTGCAACGAAGATTAGATAAACTTAAGAATGCCAAGTCTGCACTGCTCAAAGAACTTTGA
- Protein Sequence
- MESLVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTDSFSADANRSMRVTPDPVRTSRILTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMITNAQLDNEKSTYSYQVDLLKDKLEELEETTAQLRRELREKNREAEQLKRVSQRLKEDLDVCRVQLLERDTLIQENGLVIVEDERDEDDAEMSNGPENGPCPRKRVLVSMESAEALQNAGEGSLDVRLRKFACEKKELQDEIRHLRLELEDAKNRVRSERSPGSMLGHLTDSEDIQREANKHLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAETSEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00175747; iTF_00718561; iTF_01048223; iTF_01048904; iTF_00060207; iTF_00175026; iTF_01412321; iTF_00938690; iTF_00738348; iTF_01411506; iTF_01200148; iTF_01303354; iTF_00939548; iTF_01414173; iTF_00174175; iTF_01413176;
- 80% Identity
- -