Npin008777.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_021155775.2
- Location
- CM037741.1:36524574-36528919[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-115 4e-111 372.0 32.7 1 300 29 327 29 327 0.97 2 3 0.005 1.7e+02 2.2 2.6 122 171 327 376 326 380 0.91 3 3 0.039 1.3e+03 -0.7 5.4 194 238 358 401 345 402 0.59
Sequence Information
- Coding Sequence
- ATGGAGCCACTGGTGGCAGGACGGAGACGAACTACCACGAGGCATTCGGCCGAGGATCAAGCTCTTGATCAAATTGCAAAAGAGGCAGAAGCTCGATTAGCAGCTCGGAGACAAGCTAGAGCAGAGGCTAGAGAGATCCGAATGCGAGAATTGGAGAGACAGCAAAAAGAAGCTGAGGAGAACGCAGATAGAGTCTACGATATGTGTACTGCTGATGCTAACCGAACGATGAGGGTGACACCAGATCCTGTGAGAACATCTCGCCTTCTCACAAATTCCAATAACTTTCAGTCAAGTCGAAGGTCGTCCGAAGATTCCTTGGAAGATGCCGGCCTTAGTAGAGATCTTAGGTTAGAACTTAAGgaattcgaggaaaaattCCGCAAAGCTATGATAACTAATGCACAATTGGATAATGAGAAGTCAACTTATTCGTATCAAGTAGATTTATTGAAAGACAAACTTGAAGAATTAGAGGAGACAACTGCTCAATTGCGCCGAGAgctaagagaaaaaaatcgagaagCTGAACAATTGAAGCGTATAAGTCAACGCCTGAAAGAAGATTTGGATGTTTGCAGGGTGCAACTACTGGAACGAGACACACTTATCCAGGAAAATGGTCTTGTTATAGTAGAAGACGAGGGGGAGGAGAGTGATGCTGACATACCAGAAAATGGTCCACATCCAAGAAAAAGAGTACTAGTCAGTACAGAGAGTGCGGATTTGTTGCAAAATGCTGGAGAAGGATCACTGGATGTCCGACTGAGAAGATTTGCATCTGAGAAGAAAGAATTGCAAGATGAAATTCGACATTTAAGGCTGGAATTGGAAGATGCAAAGAATCGTGTTCGATCAGAGAGGTTACCAGGTTCGATGTTGGGAAATTTATCAGACTCTGAAGACATTCAACGAGAGGCAAACAAGCACTTATCAGATTACAAATTCAAACTGCAAAAAGCCGAACAGGATATGTCCACACTGCAAGCGACAGTCGCCAGGCTAGAGAGTCAAGTTATTCGATATAAATCTGCAGCAGAAGCTTCCGAAAAGGCAGAAGATGAATTAAAGGTTGAAAAGCGAAAGCTACAACGAGAGGTACGAGAATCACAGGGCCGAGTAGAGGAGCTTGAAACCGCAAATTCTCATTTACAACGTAGGCTAGATAAACTTAAGAACGCCAAATCTGCACTTCTGAAAGAACTTTGA
- Protein Sequence
- MEPLVAGRRRTTTRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADANRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMITNAQLDNEKSTYSYQVDLLKDKLEELEETTAQLRRELREKNREAEQLKRISQRLKEDLDVCRVQLLERDTLIQENGLVIVEDEGEESDADIPENGPHPRKRVLVSTESADLLQNAGEGSLDVRLRRFASEKKELQDEIRHLRLELEDAKNRVRSERLPGSMLGNLSDSEDIQREANKHLSDYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00159106;
- 80% Identity
- -