Nlec008262.1
Basic Information
- Insect
- Neodiprion lecontei
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001263575.1
- Location
- NW:8405-13429[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.2e-116 9.9e-112 372.4 32.8 1 300 43 341 43 341 0.97 2 3 0.0039 42 2.5 2.6 122 171 341 390 339 394 0.91 3 3 0.041 4.5e+02 -0.8 5.4 194 238 372 415 359 416 0.59
Sequence Information
- Coding Sequence
- atggatCCTGCTGAACTTGATAAAAGAACTGAAAATgatgtcaacattttttttaaacatcaaCAAGAGATTGAGGATTCTGATGATGTGTATGATATCGAAGACCTAGTCAAGGATGCTGACGAAGCAGAAGCTCGATTAGCAGCTCGGAGACAAGCTAGAGCAGAGGCTAGAGAGATCCGAATGCGAGAATTGGAGAGACAGCAAAAAGAAGCTGAGGAGAACGCAGATAGAGTCTACGATATGTGTACTGCTGATGCTAACCGAACGATGAGGGTGACACCAGATCCTGTGAGAACATCTCGCCTTCTCACAAATTCCAATAACTTTCAGTCAAGTCGAAGGTCGTCCGAAGATTCCTTGGAAGATGCCGGCCTTAGTAGAGATCTTAGGTTAGAACTTAAGgaattcgaggaaaaattCCGCAAAGCTATGATAACTAATGCACAATTGGATAATGAGAAGTCAACTTATTCGTATCAAGTAGATTTATTGAAAGACAGACTTGAAGAATTAGAGGAGACAACTGCTCAATTGCGCCGAGAgctaagagaaaaaaatcgagaagcTGAACAATTGAAGCGTGTAAGTCAACGCCTGAAAGAAGATTTGGATGTTTGCAGGGTGCAACTACTGGAACGAGACACACTTATCCAGGAAAATGGTCTTGTTATAGTAGAAGACGAGGGGGAGGAGAGTGATGCTGACATACCAGAAAATGGTCCACATCCAAGAAAAAGAGTACTAGTCAGTACAGAGAGTGCGGATTTGTTGCAAAATGCTGGAGAAGGATCACTGGATGTCCGACTGAGAAGATTTGCATCTGAGAAGAAAGAATTGCAAGATGAAATTCGACATTTAAGGCTGGAATTGGAAGATGCAAAGAATCGTGTTCGATCAGAGAGGTTACCAGGTTCGATGTTGGGAAACTTATCAGACTCTGAAGACATTCAACGAGAGGCAAACAAGCACTTATCAGATTACAAATTCAAACTGCAAAAAGCCGAACAGGATATGTCCACACTGCAAGCGACAGTCGCCAGGCTAGAGAGTCAAGTTATTCGATATAAATCTGCAGCAGAAGCTTCCGAAAAGGCAGAAGATGAATTAAAGGTTGAAAAGCGAAAGCTACAACGAGAGGTACGAGAATCACAGGGCCGAGTAGAGGAGCTTGAAACCGCAAATTCTCATTTACAACGTAGGCTAGATAAACTTAAGAACGCCAAATCTGCACTTCTGAAAGAACTTTGA
- Protein Sequence
- MDPAELDKRTENDVNIFFKHQQEIEDSDDVYDIEDLVKDADEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTADANRTMRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMITNAQLDNEKSTYSYQVDLLKDRLEELEETTAQLRRELREKNREAEQLKRVSQRLKEDLDVCRVQLLERDTLIQENGLVIVEDEGEESDADIPENGPHPRKRVLVSTESADLLQNAGEGSLDVRLRRFASEKKELQDEIRHLRLELEDAKNRVRSERLPGSMLGNLSDSEDIQREANKHLSDYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00159106;
- 80% Identity
- -